BDGP Sequence Production Resources |
Search the DGRC for RH54247
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 542 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7650-RA |
Protein status: | RH54247.pep: gold |
Preliminary Size: | 889 |
Sequenced Size: | 1698 |
Gene | Date | Evidence |
---|---|---|
CG7650 | 2003-07-26 | Blastp of sequenced clone |
CG7650 | 2008-04-29 | Release 5.5 accounting |
CG7650 | 2008-08-15 | Release 5.9 accounting |
CG7650 | 2008-12-18 | 5.12 accounting |
1698 bp (1698 high quality bases) assembled on 2003-07-26
GenBank Submission: BT009952
> RH54247.complete GATCGGTATTGTGACAATAGACCTATCGATACTACCATTAGTGAATAATC CAAACCCGACTAATTAAATTGTAAATTAAAAGTAAAAACTCGTTAATTAC CAATCATGGCCACTTTGGAAGACAAACTATTGGGCGAGAAACTTGAGTAC TACTGCAGCAGCAGCGAGGGCGAGGACAATGGTGACGAGGGAGGCGATAA TAAGGGGGCATCCGGGAAATCCCGATGCTCCGGTCTGACCATCGACACAA ATCCGGATGCGACTCCGGCTGGTGGATTCCGGCAGCAAAGCTCAACGAAC ACGGGTCCCAAGGGCGTTGTAAAGGACTGGCAGAGATTCAAGCAGCTCGA GGCGGAGCGACGGGATGAAACCGAACGTCAACGTCTGGCGCTGGCCAAGA AGCTCACCATTACGGCGACAACGTCGGCGGAGGACGAGGAACGCAAGCGG CAGGAGGAACTGGACGCCGAGCTGGACGAACTGATGAGCGAGGACTTCCT GCAGCAGTACCAGAAACAGCGGATGGCCGAGATGCTGCGCCAGACGGGGC ACCACCAGCAGTTTGGCCAGGTGCAGCAGTTGACCAGCCACGAGGAGTTC CTCGCCTGCGTCGAGCAGGAGAACAAGCACACCACCATCATCATCCACAT ATACGAACGACAATTGGCCGCCTGTGCCACGCTGAACAAATGCCTTGACA GTCTGGCCAGCGATTATCCGTCCATTAAGTTCGCCAAGATCTGCAGTTCC GTGGCCGGAATGAGCAGGGACTTCCGCACCAAAGGATTGCCCGCCCTACT GGTATACAAGGCCCAAGCGGTCATCGGAAACTTTGTGCGGCTTACCGATG ACCTCAGCGATGACTTCTTCGCCTCCGACGTCGAGAGTTTTCTGATTGAG CACGGCATTATAGTGGACAGAGCTCTGTACAATTGAGCTGCTAGCAAGGC TTATGAACTGACAAGTAACTTATTCGAGGCTTATCCCATGGCTGGACCTT TCAATGTATAGCTAAGACCATTAACCTATTAAATCCACTCTATCTTGGTT AATTCTTAGTTAATCAAATCCCAAAAAGTTTTTACAGTTTAATATAATCC GTATAATTTGTATCAACAAAAGAAACTAACACGACTTCTTGGAATCTCCG AGTTACTTGTCAGTTTAAGCCAGGGCTTTAGAATTATACGCAAATTTTGA CCAAATATGTGTTCGTAAGATTAGCATTTAAGAGAACTTAAGCCCGCCCT CCGTTTTAATTTTGCAATTTAAATATTTATTTTTTCCATTCAGTAATTAG TTACATTATATGTATGATTCTTTTCTCTTTTTTTTTTTTTTTTTTTGTAT ACAGAAGTTCTTAAAGTGCAACTTTCACAAAATGGAAAATGTCTCTAAAA TGGGGTAAATCAAAAGAACTATAAAACTAAATTAAAAATATTTGAAAAAT GTATTCGAAATGCATTTTGCACGCGAAAATATATGGAACAGATCCTGCTC ACTAAATATAGCGTATATCTATAACGATTCTGTCATCATTTACAACACGA TTTATATTTATGTAATAGTATTTAGTGGCTAATGAATGTACTTCACTCGA ACTCGTACTCCGTAAGATTTATACAATTATATATTTTATAGCTTATAGCC TACACATATACAGCAATAAAAATGATGTCGATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7650-RA | 1682 | CG7650-RA | 1..1682 | 2..1682 | 8355 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15598633..15600316 | 1682..2 | 8245 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15608703..15610388 | 1686..2 | 8365 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15601803..15603488 | 1686..2 | 8375 | 99.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15598633..15600316 | 1..1682 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..831 | 106..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..831 | 106..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..831 | 106..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..831 | 106..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..831 | 106..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..935 | 2..936 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..1682 | 2..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..1680 | 4..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..935 | 2..936 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7650-RA | 1..1680 | 4..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15608707..15610388 | 1..1682 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15608707..15610388 | 1..1682 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15608707..15610388 | 1..1682 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15601807..15603488 | 1..1682 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15601807..15603488 | 1..1682 | 99 | Minus |
Translation from 105 to 935
> RH54247.pep MATLEDKLLGEKLEYYCSSSEGEDNGDEGGDNKGASGKSRCSGLTIDTNP DATPAGGFRQQSSTNTGPKGVVKDWQRFKQLEAERRDETERQRLALAKKL TITATTSAEDEERKRQEELDAELDELMSEDFLQQYQKQRMAEMLRQTGHH QQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQLAACATLNKCLDSL ASDYPSIKFAKICSSVAGMSRDFRTKGLPALLVYKAQAVIGNFVRLTDDL SDDFFASDVESFLIEHGIIVDRALYN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10390-PA | 275 | GF10390-PA | 1..275 | 1..276 | 1256 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13535-PA | 276 | GG13535-PA | 1..276 | 1..276 | 1446 | 98.2 | Plus |
Dere\GG13862-PA | 240 | GG13862-PA | 66..212 | 122..269 | 149 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23318-PA | 281 | GH23318-PA | 1..281 | 1..276 | 1192 | 84.3 | Plus |
Dgri\GH14439-PA | 240 | GH14439-PA | 23..187 | 79..244 | 162 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7650-PA | 276 | CG7650-PA | 1..276 | 1..276 | 1418 | 100 | Plus |
viaf-PA | 240 | CG18593-PA | 65..212 | 117..269 | 152 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13629-PA | 282 | GI13629-PA | 1..282 | 1..276 | 1148 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25506-PA | 99 | GL25506-PA | 1..98 | 1..98 | 417 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20503-PA | 276 | GA20503-PA | 1..276 | 1..276 | 1291 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24478-PA | 276 | GM24478-PA | 1..276 | 1..276 | 1456 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12551-PA | 276 | GD12551-PA | 1..276 | 1..276 | 1460 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13966-PA | 280 | GJ13966-PA | 1..280 | 1..276 | 1120 | 84.6 | Plus |
Dvir\GJ13906-PA | 240 | GJ13906-PA | 41..212 | 101..269 | 146 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14696-PA | 281 | GK14696-PA | 1..281 | 1..276 | 1273 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22253-PA | 276 | GE22253-PA | 1..276 | 1..276 | 1432 | 97.1 | Plus |
Dyak\GE19829-PA | 276 | GE19829-PA | 1..276 | 1..276 | 1432 | 97.1 | Plus |
Dyak\GE20155-PA | 240 | GE20155-PA | 66..212 | 122..269 | 144 | 26.5 | Plus |
Translation from 105 to 935
> RH54247.hyp MATLEDKLLGEKLEYYCSSSEGEDNGDEGGDNKGASGKSRCSGLTIDTNP DATPAGGFRQQSSTNTGPKGVVKDWQRFKQLEAERRDETERQRLALAKKL TITATTSAEDEERKRQEELDAELDELMSEDFLQQYQKQRMAEMLRQTGHH QQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQLAACATLNKCLDSL ASDYPSIKFAKICSSVAGMSRDFRTKGLPALLVYKAQAVIGNFVRLTDDL SDDFFASDVESFLIEHGIIVDRALYN*