Clone RH54247 Report

Search the DGRC for RH54247

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:542
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG7650-RA
Protein status:RH54247.pep: gold
Preliminary Size:889
Sequenced Size:1698

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7650 2003-07-26 Blastp of sequenced clone
CG7650 2008-04-29 Release 5.5 accounting
CG7650 2008-08-15 Release 5.9 accounting
CG7650 2008-12-18 5.12 accounting

Clone Sequence Records

RH54247.complete Sequence

1698 bp (1698 high quality bases) assembled on 2003-07-26

GenBank Submission: BT009952

> RH54247.complete
GATCGGTATTGTGACAATAGACCTATCGATACTACCATTAGTGAATAATC
CAAACCCGACTAATTAAATTGTAAATTAAAAGTAAAAACTCGTTAATTAC
CAATCATGGCCACTTTGGAAGACAAACTATTGGGCGAGAAACTTGAGTAC
TACTGCAGCAGCAGCGAGGGCGAGGACAATGGTGACGAGGGAGGCGATAA
TAAGGGGGCATCCGGGAAATCCCGATGCTCCGGTCTGACCATCGACACAA
ATCCGGATGCGACTCCGGCTGGTGGATTCCGGCAGCAAAGCTCAACGAAC
ACGGGTCCCAAGGGCGTTGTAAAGGACTGGCAGAGATTCAAGCAGCTCGA
GGCGGAGCGACGGGATGAAACCGAACGTCAACGTCTGGCGCTGGCCAAGA
AGCTCACCATTACGGCGACAACGTCGGCGGAGGACGAGGAACGCAAGCGG
CAGGAGGAACTGGACGCCGAGCTGGACGAACTGATGAGCGAGGACTTCCT
GCAGCAGTACCAGAAACAGCGGATGGCCGAGATGCTGCGCCAGACGGGGC
ACCACCAGCAGTTTGGCCAGGTGCAGCAGTTGACCAGCCACGAGGAGTTC
CTCGCCTGCGTCGAGCAGGAGAACAAGCACACCACCATCATCATCCACAT
ATACGAACGACAATTGGCCGCCTGTGCCACGCTGAACAAATGCCTTGACA
GTCTGGCCAGCGATTATCCGTCCATTAAGTTCGCCAAGATCTGCAGTTCC
GTGGCCGGAATGAGCAGGGACTTCCGCACCAAAGGATTGCCCGCCCTACT
GGTATACAAGGCCCAAGCGGTCATCGGAAACTTTGTGCGGCTTACCGATG
ACCTCAGCGATGACTTCTTCGCCTCCGACGTCGAGAGTTTTCTGATTGAG
CACGGCATTATAGTGGACAGAGCTCTGTACAATTGAGCTGCTAGCAAGGC
TTATGAACTGACAAGTAACTTATTCGAGGCTTATCCCATGGCTGGACCTT
TCAATGTATAGCTAAGACCATTAACCTATTAAATCCACTCTATCTTGGTT
AATTCTTAGTTAATCAAATCCCAAAAAGTTTTTACAGTTTAATATAATCC
GTATAATTTGTATCAACAAAAGAAACTAACACGACTTCTTGGAATCTCCG
AGTTACTTGTCAGTTTAAGCCAGGGCTTTAGAATTATACGCAAATTTTGA
CCAAATATGTGTTCGTAAGATTAGCATTTAAGAGAACTTAAGCCCGCCCT
CCGTTTTAATTTTGCAATTTAAATATTTATTTTTTCCATTCAGTAATTAG
TTACATTATATGTATGATTCTTTTCTCTTTTTTTTTTTTTTTTTTTGTAT
ACAGAAGTTCTTAAAGTGCAACTTTCACAAAATGGAAAATGTCTCTAAAA
TGGGGTAAATCAAAAGAACTATAAAACTAAATTAAAAATATTTGAAAAAT
GTATTCGAAATGCATTTTGCACGCGAAAATATATGGAACAGATCCTGCTC
ACTAAATATAGCGTATATCTATAACGATTCTGTCATCATTTACAACACGA
TTTATATTTATGTAATAGTATTTAGTGGCTAATGAATGTACTTCACTCGA
ACTCGTACTCCGTAAGATTTATACAATTATATATTTTATAGCTTATAGCC
TACACATATACAGCAATAAAAATGATGTCGATAAAAAAAAAAAAAAAA

RH54247.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7650-RA 1682 CG7650-RA 1..1682 2..1682 8355 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15598633..15600316 1682..2 8245 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15608703..15610388 1686..2 8365 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15601803..15603488 1686..2 8375 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 13:15:56 has no hits.

RH54247.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:16:45 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15598633..15600316 1..1682 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:40 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..831 106..936 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:47 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..831 106..936 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:13 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..831 106..936 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:17 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..831 106..936 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:12 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..831 106..936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:43 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..935 2..936 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:47 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..1682 2..1682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:13 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..1680 4..1682 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:17 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..935 2..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:12 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
CG7650-RA 1..1680 4..1682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:45 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15608707..15610388 1..1682 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:45 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15608707..15610388 1..1682 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:45 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15608707..15610388 1..1682 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:13 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15601807..15603488 1..1682 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:29 Download gff for RH54247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15601807..15603488 1..1682 99   Minus

RH54247.pep Sequence

Translation from 105 to 935

> RH54247.pep
MATLEDKLLGEKLEYYCSSSEGEDNGDEGGDNKGASGKSRCSGLTIDTNP
DATPAGGFRQQSSTNTGPKGVVKDWQRFKQLEAERRDETERQRLALAKKL
TITATTSAEDEERKRQEELDAELDELMSEDFLQQYQKQRMAEMLRQTGHH
QQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQLAACATLNKCLDSL
ASDYPSIKFAKICSSVAGMSRDFRTKGLPALLVYKAQAVIGNFVRLTDDL
SDDFFASDVESFLIEHGIIVDRALYN*

RH54247.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10390-PA 275 GF10390-PA 1..275 1..276 1256 89.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13535-PA 276 GG13535-PA 1..276 1..276 1446 98.2 Plus
Dere\GG13862-PA 240 GG13862-PA 66..212 122..269 149 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23318-PA 281 GH23318-PA 1..281 1..276 1192 84.3 Plus
Dgri\GH14439-PA 240 GH14439-PA 23..187 79..244 162 31.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7650-PA 276 CG7650-PA 1..276 1..276 1418 100 Plus
viaf-PA 240 CG18593-PA 65..212 117..269 152 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13629-PA 282 GI13629-PA 1..282 1..276 1148 84.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25506-PA 99 GL25506-PA 1..98 1..98 417 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20503-PA 276 GA20503-PA 1..276 1..276 1291 87 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24478-PA 276 GM24478-PA 1..276 1..276 1456 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12551-PA 276 GD12551-PA 1..276 1..276 1460 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13966-PA 280 GJ13966-PA 1..280 1..276 1120 84.6 Plus
Dvir\GJ13906-PA 240 GJ13906-PA 41..212 101..269 146 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14696-PA 281 GK14696-PA 1..281 1..276 1273 86.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22253-PA 276 GE22253-PA 1..276 1..276 1432 97.1 Plus
Dyak\GE19829-PA 276 GE19829-PA 1..276 1..276 1432 97.1 Plus
Dyak\GE20155-PA 240 GE20155-PA 66..212 122..269 144 26.5 Plus

RH54247.hyp Sequence

Translation from 105 to 935

> RH54247.hyp
MATLEDKLLGEKLEYYCSSSEGEDNGDEGGDNKGASGKSRCSGLTIDTNP
DATPAGGFRQQSSTNTGPKGVVKDWQRFKQLEAERRDETERQRLALAKKL
TITATTSAEDEERKRQEELDAELDELMSEDFLQQYQKQRMAEMLRQTGHH
QQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQLAACATLNKCLDSL
ASDYPSIKFAKICSSVAGMSRDFRTKGLPALLVYKAQAVIGNFVRLTDDL
SDDFFASDVESFLIEHGIIVDRALYN*

RH54247.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7650-PA 276 CG7650-PA 1..276 1..276 1418 100 Plus
viaf-PA 240 CG18593-PA 65..212 117..269 152 26.8 Plus