BDGP Sequence Production Resources |
Search the DGRC for RH54517
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 545 |
Well: | 17 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12279-RA |
Protein status: | RH54517.pep: gold |
Preliminary Size: | 600 |
Sequenced Size: | 487 |
Gene | Date | Evidence |
---|---|---|
CG12279 | 2001-12-13 | Blastp of sequenced clone |
CG12279 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12279 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12279 | 2008-04-29 | Release 5.5 accounting |
CG12279 | 2008-08-15 | Release 5.9 accounting |
CG12279 | 2008-12-18 | 5.12 accounting |
487 bp (487 high quality bases) assembled on 2001-12-13
GenBank Submission: AY070705
> RH54517.complete GACACCTCAAACCGGGCTAACTTTTGAGTTCAACTAAGTTCTTTAAGAAT TACCATTAAAAATAAATATGGCCACCTACGAGGAAGTCAAGGACATTCCA AACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAA GGAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGG AGAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGC GTCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGG ACGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACG CCAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCTAA AACATTCAGTCTTTAAACAAATTGATTACAAATCTATAAAATGATATAAT AAACTACACGCTAACTTCCTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8530342..8530528 | 2..188 | 935 | 100 | Plus |
chr3R | 27901430 | chr3R | 8530585..8530750 | 183..348 | 815 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 8530813..8530935 | 349..471 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12705095..12705281 | 2..188 | 935 | 100 | Plus |
3R | 32079331 | 3R | 12705338..12705503 | 183..348 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 12705566..12705691 | 349..474 | 630 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12445926..12446112 | 2..188 | 935 | 100 | Plus |
3R | 31820162 | 3R | 12446169..12446334 | 183..348 | 815 | 99.3 | Plus |
3R | 31820162 | 3R | 12446397..12446522 | 349..474 | 630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8530341..8530528 | 1..188 | 99 | -> | Plus |
chr3R | 8530591..8530750 | 189..348 | 100 | -> | Plus |
chr3R | 8530813..8530935 | 349..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 1..333 | 68..400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 1..333 | 68..400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 1..333 | 68..400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 1..333 | 68..400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 1..333 | 68..400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 2..471 | 2..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 2..471 | 2..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 2..471 | 2..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 2..471 | 2..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12279-RA | 2..471 | 2..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12705094..12705281 | 1..188 | 99 | -> | Plus |
3R | 12705344..12705503 | 189..348 | 100 | -> | Plus |
3R | 12705566..12705688 | 349..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12705094..12705281 | 1..188 | 99 | -> | Plus |
3R | 12705344..12705503 | 189..348 | 100 | -> | Plus |
3R | 12705566..12705688 | 349..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12705094..12705281 | 1..188 | 99 | -> | Plus |
3R | 12705344..12705503 | 189..348 | 100 | -> | Plus |
3R | 12705566..12705688 | 349..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8530816..8531003 | 1..188 | 99 | -> | Plus |
arm_3R | 8531066..8531225 | 189..348 | 100 | -> | Plus |
arm_3R | 8531288..8531410 | 349..471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12445925..12446112 | 1..188 | 99 | -> | Plus |
3R | 12446175..12446334 | 189..348 | 100 | -> | Plus |
3R | 12446397..12446519 | 349..471 | 100 | Plus |
Translation from 67 to 399
> RH54517.hyp MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALNL PEEDFAQTYGRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAG SWTEWQAKQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12279-PA | 110 | CG12279-PA | 1..110 | 1..110 | 566 | 100 | Plus |
Hsp67Bb-PD | 111 | CG4456-PD | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PC | 111 | CG4456-PC | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PB | 111 | CG4456-PB | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PA | 111 | CG4456-PA | 1..109 | 1..109 | 326 | 53.2 | Plus |
Translation from 67 to 399
> RH54517.pep MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALNL PEEDFAQTYGRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAG SWTEWQAKQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17119-PA | 113 | GF17119-PA | 1..110 | 1..110 | 443 | 82.7 | Plus |
Dana\GF10688-PA | 139 | GF10688-PA | 29..137 | 1..109 | 354 | 58.7 | Plus |
Dana\GF20128-PA | 139 | GF20128-PA | 29..137 | 1..109 | 328 | 55 | Plus |
Dana\GF17037-PA | 156 | GF17037-PA | 44..152 | 1..109 | 258 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19214-PA | 110 | GG19214-PA | 1..110 | 1..110 | 501 | 95.5 | Plus |
Dere\GG15366-PA | 111 | GG15366-PA | 1..109 | 1..109 | 325 | 52.3 | Plus |
Dere\GG11250-PA | 155 | GG11250-PA | 43..147 | 1..105 | 267 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25246-PA | 111 | GH25246-PA | 1..110 | 1..110 | 427 | 80 | Plus |
Dgri\GH18596-PA | 111 | GH18596-PA | 1..110 | 1..110 | 427 | 80 | Plus |
Dgri\GH14585-PA | 113 | GH14585-PA | 1..109 | 1..109 | 351 | 59.6 | Plus |
Dgri\GH18488-PA | 125 | GH18488-PA | 13..121 | 1..109 | 244 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12279-PA | 110 | CG12279-PA | 1..110 | 1..110 | 566 | 100 | Plus |
CG4456-PD | 111 | CG4456-PD | 1..109 | 1..109 | 326 | 53.2 | Plus |
CG4456-PC | 111 | CG4456-PC | 1..109 | 1..109 | 326 | 53.2 | Plus |
CG4456-PB | 111 | CG4456-PB | 1..109 | 1..109 | 326 | 53.2 | Plus |
CG4456-PA | 111 | CG4456-PA | 1..109 | 1..109 | 326 | 53.2 | Plus |
CG6000-PC | 154 | CG6000-PC | 45..150 | 4..109 | 269 | 48.1 | Plus |
CG6000-PD | 154 | CG6000-PD | 45..150 | 4..109 | 269 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10805-PA | 111 | GI10805-PA | 1..110 | 1..110 | 418 | 79.1 | Plus |
Dmoj\GI12243-PA | 114 | GI12243-PA | 3..110 | 2..109 | 352 | 59.3 | Plus |
Dmoj\GI24633-PA | 172 | GI24633-PA | 60..164 | 1..105 | 250 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24425-PA | 112 | GL24425-PA | 1..109 | 1..109 | 490 | 81.7 | Plus |
Dper\GL22440-PA | 111 | GL22440-PA | 1..109 | 1..109 | 338 | 54.1 | Plus |
Dper\GL23397-PA | 159 | GL23397-PA | 47..155 | 1..109 | 243 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11529-PA | 112 | GA11529-PA | 1..109 | 1..109 | 490 | 81.7 | Plus |
Dpse\GA24291-PA | 111 | GA24291-PA | 1..109 | 1..109 | 334 | 53.2 | Plus |
Dpse\GA27244-PA | 159 | GA27244-PA | 47..155 | 1..109 | 244 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24062-PA | 110 | GM24062-PA | 1..110 | 1..110 | 512 | 95.5 | Plus |
Dsec\GM25139-PA | 111 | GM25139-PA | 1..109 | 1..109 | 335 | 53.2 | Plus |
Dsec\GM26554-PA | 153 | GM26554-PA | 41..145 | 1..105 | 257 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18858-PA | 110 | GD18858-PA | 1..110 | 1..110 | 515 | 95.5 | Plus |
Dsim\GD14173-PA | 111 | GD14173-PA | 1..109 | 1..109 | 335 | 53.2 | Plus |
Dsim\GD21060-PA | 153 | GD21060-PA | 41..145 | 1..105 | 257 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14403-PA | 111 | GJ14403-PA | 1..110 | 1..110 | 424 | 78.2 | Plus |
Dvir\GJ11475-PA | 183 | GJ11475-PA | 72..179 | 2..109 | 353 | 59.3 | Plus |
Dvir\GJ14195-PA | 171 | GJ14195-PA | 62..163 | 4..105 | 255 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13732-PA | 111 | GK13732-PA | 1..110 | 1..110 | 431 | 82.7 | Plus |
Dwil\GK17634-PA | 112 | GK17634-PA | 1..109 | 1..109 | 328 | 53.2 | Plus |
Dwil\GK11151-PA | 155 | GK11151-PA | 43..151 | 1..109 | 278 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26219-PA | 110 | GE26219-PA | 1..110 | 1..110 | 503 | 95.5 | Plus |
Dyak\Hsp67Bb-PA | 111 | GE20829-PA | 1..109 | 1..109 | 340 | 55 | Plus |
Dyak\GE23442-PA | 155 | GE23442-PA | 43..147 | 1..105 | 262 | 49.5 | Plus |