BDGP Sequence Production Resources |
Search the DGRC for RH55360
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 553 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RPA3-RA |
Protein status: | RH55360.pep: gold |
Preliminary Size: | 339 |
Sequenced Size: | 557 |
Gene | Date | Evidence |
---|---|---|
CG15220 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15220 | 2002-04-21 | Blastp of sequenced clone |
CG15220 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15220 | 2008-04-29 | Release 5.5 accounting |
CG15220 | 2008-08-15 | Release 5.9 accounting |
CG15220 | 2008-12-18 | 5.12 accounting |
557 bp (557 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113602
> RH55360.complete GAACTATTGGCGCTCTTTCTTGTTTACGGCATTTCATTTTCTGCTGAAAT TGGCTGTTTTTTGAACGTTATTAACTGAGGAGTTATTATGGATGCCTTTG ATCCACGCTCGATTATCAACGGCGGCATGCTGAAGCAGTTTTCCGGCCAA ACCGTGAGCATAATGGTTCGCGTGGAGAGCGTCGCGGGATCCACTTTGCT GGCCAGTTCCACAGACAACCACAAGCTAAAGATCAATCTGCCGGGTGAGC TGGGCGCCGCCGAAGGGGCCTGGGTCGAGGTCATTGGAGTGCCCCATGGT GCGGACACCCTCAGGGCCAAGGAGGTCATCGAGTTTGGCGGCGAGAACAT CGACTTCGATAAGGATGGCTATAATGGATTGAGCCACCTGATTAACAATG TCAAGGCCTTCTATCGCAGCGGCTAGGATGTCCACAATTATATCTAAGAA TTAATATTATGTACTCTAATGTTATTTTTTCCATTTTTTTGGAGAACACT CAGAGCTGGCATTAACTTTAAATATAAATCATCTATCTACATAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15220-RA | 716 | CG15220-RA | 43..584 | 2..543 | 2710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11506422..11506639 | 325..542 | 100 | <- | Minus |
chrX | 11506711..11507033 | 1..324 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..339 | 88..426 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..339 | 88..426 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..339 | 88..426 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..339 | 88..426 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RPA3-RA | 1..339 | 88..426 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..541 | 2..542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..541 | 2..542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..541 | 2..542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15220-RA | 1..541 | 2..542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RPA3-RA | 1..541 | 2..542 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11615229..11615446 | 325..542 | 100 | <- | Minus |
X | 11615518..11615840 | 1..324 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11615229..11615446 | 325..542 | 100 | <- | Minus |
X | 11615518..11615840 | 1..324 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11615229..11615446 | 325..542 | 100 | <- | Minus |
X | 11615518..11615840 | 1..324 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11509262..11509479 | 325..542 | 100 | <- | Minus |
arm_X | 11509551..11509873 | 1..324 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11623327..11623544 | 325..542 | 100 | <- | Minus |
X | 11623616..11623938 | 1..324 | 99 | Minus |
Translation from 87 to 425
> RH55360.pep MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH LINNVKAFYRSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19441-PA | 113 | GF19441-PA | 2..113 | 1..112 | 533 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18844-PA | 112 | GG18844-PA | 1..112 | 1..112 | 564 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24192-PA | 113 | GH24192-PA | 5..113 | 4..112 | 467 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RPA3-PB | 112 | CG15220-PB | 1..112 | 1..112 | 574 | 100 | Plus |
RPA3-PA | 112 | CG15220-PA | 1..112 | 1..112 | 574 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14830-PA | 113 | GI14830-PA | 5..113 | 4..112 | 447 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13581-PA | 113 | GA13581-PA | 2..113 | 1..112 | 506 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13057-PA | 112 | GM13057-PA | 1..112 | 1..112 | 584 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15982-PA | 112 | GD15982-PA | 1..112 | 1..112 | 584 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19496-PA | 113 | GJ19496-PA | 5..113 | 4..112 | 449 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10101-PA | 112 | GK10101-PA | 2..112 | 3..112 | 464 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17609-PA | 112 | GE17609-PA | 1..112 | 1..112 | 580 | 98.2 | Plus |
Translation from 87 to 425
> RH55360.hyp MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH LINNVKAFYRSG*