Clone RH55663 Report

Search the DGRC for RH55663

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:556
Well:63
Vector:pFlc-1
Associated Gene/Transcriptjdp-RC
Protein status:RH55663.pep: gold
Preliminary Size:662
Sequenced Size:2483

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2239 2004-01-09 Blastp of sequenced clone
jdp 2008-04-29 Release 5.5 accounting
jdp 2008-08-15 Release 5.9 accounting
jdp 2008-12-18 5.12 accounting

Clone Sequence Records

RH55663.complete Sequence

2483 bp (2483 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011341

> RH55663.complete
GATCAGTTCGACTTTCGACGCGCTGCCAGAAACATCGTGAGCGCCGCTTA
TCCCAAAAAAAACATATATAAATTCCCGACCGATCCCAGGAATAACTGAC
GCAATGAGCGCCGTTGATGCTATAATCAATTACAAGCGCAGTCCCAACGA
GGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCATCGCCCGAGCAGA
TCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCATCCCGACAAGAAC
TCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGTTAAAGGAGGCCAA
GGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTACGACAAGTGGCGCA
ACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGGCATGAAGGAGCAT
GTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAGTGGATAAAGAGGT
ATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAAGTAGTCGCCCCGT
CTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTCGGCACGGCGGGAG
CCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCACTGCGTCAACGCT
TGGCCTTGTTTTTTAAATTTCTTTTCATTGGTTTGTTTGCCGCGCTCGTA
ATGAAATTTGTAAGCCAAGCCGGAGTTCATTTTTGCTGTAGCACAATTAA
CGCGATTATTCATTACCCGCCCGAAAGCCACCCACTTTCCCGCCCACAAG
GCTCTATGGTAATTTCCGCTGCCGAGCGAAGCGGAAATTGTCGTTATCCA
TCAGCTGCTGACATTGTCCGGCGCTCAAAAGGCGGCGGGGCTTTTGGGCC
CCAAATCCGCATTTGCAATTCTAATTTTCAGCTCGGACACCTAGCAAAAA
CGGGAACAGAATAGTCCCTTGGATTCTATTAAATTTCATTCAAGGTAGTT
CATTACGAAGAGGGTGTGCTTTTGTCTCAACTTTTGTCTTGTAATTAAAA
TTTGTCATTGTGTCTTTTAATATCCTTAAGAACTTTCATTCCTTGGAACT
TTTTTCTTGGGAAACCCCATTATTATTATTAAGTCGTATTTTTCGTTTGG
TATTACCAATTCCCAAACTGCCAGTAGCTCACCAACTCCGGAACTTTATT
CCTCACTTGTCAGTGTTCCATGTGATAGATGTGTACAATAAATAGCCAAT
TAGAACCCCCTTTTCCCTTACCCCTTTTTTTTCTCTGTGTCTCTCTATAA
GCCCGCTCCTGAGTGCCCAATGATATCCACCGAATGCAAACCTATCTTGT
ATGTGCCTCTTCATCCAACTCTGTGTGTGCCCGTGTGTGTGATTGCATGC
GAAGCAAAGGAGGACCAATGCACCGAACCAAAGTGCCTTGGTCCTCGACC
GAAACCGCGGGAATTTGATCTAATTAAATGCTTTTCCCACCCACTCACGC
TACGCCAACCAAAACAAACAACCAAACAAAAGTCCATGCACTGGGTAACA
CCCAAGACCAAGGATCGCATGCTGCCCGAGACCGGTGGAGCAGCTGCCCA
GGGACCTGGAACCGGTGCAGGATGCAGCAGCGGTGGCCTGACCGCAGCAT
CCCCCAATCCCGCCCACCGGCGGGCCTCGGAGGGCGGGGCGGCCTTGTAC
TACGGGAGTCGCAAGGGCGAGTGGGGCGGCGAGAACACCGATGTGGCCAA
CAAGTTCCGCAACTACGAGATCTAAGAGGGTCGTCGGCCACATATAGATG
TTTCAATTTTAAAAATATTTCAAGTCAAACCGATGAGCGAGCAGGAGGAG
TTGGGTGTCTATCCCGAAAGTTATGCAATTATATCAAAATATTCTGAAAG
GGAAACAAAGTTTATTATCGATGTGTAACTTAAGCGTTGCGAACCACAGA
GCACAGATACTCTTATATAGATGTTTATAGGTGTACAAATAAAAAATATA
TAGAAAAATGGTAATTAACTAACGTATATTTAAGTGAAAGAAACTGTAAT
TTCAATAAACTCCCCCGATGAAAAATCCCAGGCGGAGCGGCAAGAATTTT
AAGTTGAAGTAATTAGTCAAATTTTATCGCAGTCATGCATATATGAATAT
ACACACCATATACTATATATATATTTATGTAATCAGTGTATTTGTATATC
GATGTTTCAAGTACCATGAATGTACCAAGACAATCCCTTGGCAGCAAACA
AAACTAAACTAAAGCTAATGCTAAAGCTGTAACTGAAACTAAACTATTAC
TTAACTGGTGACAGTCTAGCGATTCACCCACCACGAGCCAGAAAATGAGA
ACATATTGAAAGACATGGCAAAGCGAATTTAAACCTCTATACACACGACA
CATTTGCATAGTCAAAAAAAGTAAATCTCACTCGGTGTCCTTTTTAAATG
CAACATTGCGAAAAGCTCCACTGAACTGTTTTCCCTACCTGAAAAATCAT
TTTCGCAGAAAATCAACAAAAAAAAAAAAAAAA

RH55663.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 2028 jdp-RA 470..1471 1481..2482 5010 100 Plus
jdp.a 1937 jdp.a 414..1415 1481..2482 5010 100 Plus
jdp-RB 1989 jdp-RB 431..1432 1481..2482 5010 100 Plus
jdp-RA 2028 jdp-RA 25..471 2..448 2235 100 Plus
jdp-RB 1989 jdp-RB 25..432 2..409 2040 100 Plus
jdp.a 1937 jdp.a 57..415 90..448 1795 100 Plus
jdp.a 1937 jdp.a 1..56 2..57 280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26340102..26342278 2467..291 10855 99.9 Minus
chr3R 27901430 chr3R 26348762..26348894 190..58 665 100 Minus
chr3R 27901430 chr3R 26345745..26345848 293..190 520 100 Minus
chr3R 27901430 chr3R 26349500..26349555 57..2 250 96.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30517574..30519765 2482..291 10960 100 Minus
3R 32079331 3R 30526243..30526375 190..58 665 100 Minus
3R 32079331 3R 30523227..30523330 293..190 520 100 Minus
3R 32079331 3R 30526984..30527039 57..2 280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30258405..30260596 2482..291 10960 100 Minus
3R 31820162 3R 30267074..30267206 190..58 665 100 Minus
3R 31820162 3R 30264058..30264161 293..190 520 100 Minus
3R 31820162 3R 30267815..30267870 57..2 280 100 Minus
Blast to na_te.dros performed 2019-03-15 20:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3798..3957 1827..1982 123 58.3 Plus

RH55663.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:39:54 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26340102..26342276 293..2467 99 <- Minus
chr3R 26345746..26345847 191..292 100 <- Minus
chr3R 26348762..26348894 58..190 100 <- Minus
chr3R 26349500..26349555 1..57 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:59 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 104..616 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:07 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 104..616 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:48 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 104..616 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:57 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 104..616 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:33 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 104..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 19:53:08 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed on 2011-03-16 16:43:07 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 03:09:48 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:33:18 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RB 1..406 2..407 100 == Plus
jdp-RB 407..1393 1481..2467 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 22:40:33 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:54 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517589..30519763 293..2467 100 <- Minus
3R 30523228..30523329 191..292 100 <- Minus
3R 30526243..30526375 58..190 100 <- Minus
3R 30526984..30527039 1..57 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:54 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517589..30519763 293..2467 100 <- Minus
3R 30523228..30523329 191..292 100 <- Minus
3R 30526243..30526375 58..190 100 <- Minus
3R 30526984..30527039 1..57 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:54 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30517589..30519763 293..2467 100 <- Minus
3R 30523228..30523329 191..292 100 <- Minus
3R 30526243..30526375 58..190 100 <- Minus
3R 30526984..30527039 1..57 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:48 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26351965..26352097 58..190 100 <- Minus
arm_3R 26352706..26352761 1..57 98   Minus
arm_3R 26348950..26349051 191..292 100 <- Minus
arm_3R 26343311..26345485 293..2467 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:32 Download gff for RH55663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30258420..30260594 293..2467 100 <- Minus
3R 30264059..30264160 191..292 100 <- Minus
3R 30267074..30267206 58..190 100 <- Minus
3R 30267815..30267870 1..57 98   Minus

RH55663.pep Sequence

Translation from 103 to 615

> RH55663.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVF*

RH55663.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23324-PA 195 GF23324-PA 1..115 1..115 617 98.3 Plus
Dana\GF10450-PA 354 GF10450-PA 2..72 15..86 159 43.1 Plus
Dana\GF15175-PA 346 GF15175-PA 3..72 16..86 147 42.3 Plus
Dana\GF19555-PA 334 GF19555-PA 2..72 15..86 147 38.9 Plus
Dana\GF23490-PA 130 GF23490-PA 2..72 15..86 139 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11926-PA 184 GG11926-PA 1..120 1..120 566 86.7 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 2..72 15..86 155 41.7 Plus
Dere\GG24779-PA 350 GG24779-PA 2..72 15..86 145 40.3 Plus
Dere\GG13187-PA 127 GG13187-PA 2..72 15..86 144 40.3 Plus
Dere\GG24722-PA 354 GG24722-PA 25..104 17..101 142 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17424-PA 191 GH17424-PA 1..115 1..115 604 95.7 Plus
Dgri\GH15011-PA 353 GH15011-PA 2..72 15..86 153 40.3 Plus
Dgri\GH11226-PA 355 GH11226-PA 25..88 17..80 145 43.8 Plus
Dgri\GH11404-PA 346 GH11404-PA 2..72 15..86 144 38.9 Plus
Dgri\GH16902-PA 127 GH16902-PA 2..78 15..92 139 37.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PC 170 CG2239-PC 1..170 1..170 890 100 Plus
jdp-PA 195 CG2239-PA 1..115 1..115 611 100 Plus
jdp-PB 182 CG2239-PB 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus
CG5001-PC 346 CG5001-PC 3..72 16..86 151 40.8 Plus
CG5001-PD 350 CG5001-PD 3..72 16..86 151 40.8 Plus
CG5001-PA 350 CG5001-PA 3..72 16..86 151 40.8 Plus
CG5001-PB 350 CG5001-PB 3..72 16..86 151 40.8 Plus
shv-PA 354 CG4164-PA 25..104 17..101 150 36.5 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22753-PA 192 GI22753-PA 1..115 1..115 603 95.7 Plus
Dmoj\GI13174-PA 352 GI13174-PA 2..72 15..86 157 41.7 Plus
Dmoj\GI21690-PA 355 GI21690-PA 25..88 17..80 155 45.3 Plus
Dmoj\GI15199-PA 325 GI15199-PA 2..72 15..86 152 43.1 Plus
Dmoj\GI19741-PA 512 GI19741-PA 73..156 6..89 142 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14039-PA 177 GL14039-PA 6..93 28..115 453 94.3 Plus
Dper\GL20776-PA 230 GL20776-PA 3..72 16..86 152 40.8 Plus
Dper\GL15626-PA 318 GL15626-PA 2..72 15..86 148 41.7 Plus
Dper\GL25452-PA 129 GL25452-PA 3..72 16..86 138 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15317-PC 182 GA15317-PC 1..131 1..131 619 87.8 Plus
Dpse\GA15317-PA 199 GA15317-PA 1..115 1..115 606 96.5 Plus
Dpse\GA15317-PB 186 GA15317-PB 1..114 1..114 542 86.8 Plus
Dpse\GA10408-PA 353 GA10408-PA 3..72 16..86 152 40.8 Plus
Dpse\GA18584-PA 346 GA18584-PA 2..72 15..86 148 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12145-PA 182 GM12145-PA 1..120 1..120 560 85.8 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 2..72 15..86 154 43.1 Plus
Dsec\GM16806-PA 350 GM16806-PA 2..72 15..86 148 40.3 Plus
Dsec\GM16745-PA 354 GM16745-PA 25..88 17..80 148 42.2 Plus
Dsec\GM22099-PA 128 GM22099-PA 2..72 15..86 140 40.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16969-PA 182 GD16969-PA 1..120 1..120 565 86.7 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 2..72 15..86 159 43.1 Plus
Dsim\GD23083-PA 346 GD23083-PA 2..72 15..86 148 40.3 Plus
Dsim\GD12075-PA 128 GD12075-PA 2..72 15..86 140 40.3 Plus
Dsim\GD17653-PA 189 GD17653-PA 13..90 12..89 135 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22754-PA 192 GJ22754-PA 1..155 1..150 600 76.9 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 3..72 16..86 149 43.7 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 2..72 15..86 147 41.7 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 2..66 15..80 147 43.9 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 3..78 16..92 136 36.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13121-PA 193 GK13121-PA 1..115 1..115 615 97.4 Plus
Dwil\GK19161-PA 125 GK19161-PA 4..79 17..93 158 39 Plus
Dwil\GK16875-PA 356 GK16875-PA 2..73 15..87 152 39.7 Plus
Dwil\GK15183-PA 346 GK15183-PA 2..72 15..86 148 41.7 Plus
Dwil\GK19767-PA 330 GK19767-PA 2..72 15..86 143 40.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23376-PA 182 GE23376-PA 1..145 1..150 566 74 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 2..72 15..86 154 41.7 Plus
Dyak\GE22992-PA 127 GE22992-PA 2..72 15..86 145 40.3 Plus
Dyak\GE19512-PA 127 GE19512-PA 2..72 15..86 145 40.3 Plus
Dyak\GE17451-PA 350 GE17451-PA 2..72 15..86 145 40.3 Plus

RH55663.hyp Sequence

Translation from 103 to 615

> RH55663.hyp
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVF*

RH55663.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PC 170 CG2239-PC 1..170 1..170 890 100 Plus
jdp-PA 195 CG2239-PA 1..115 1..115 611 100 Plus
jdp-PB 182 CG2239-PB 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus