BDGP Sequence Production Resources |
Search the DGRC for RH55882
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 558 |
Well: | 82 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gapdh2-RA |
Protein status: | RH55882.pep: gold |
Preliminary Size: | 1325 |
Sequenced Size: | 1458 |
Gene | Date | Evidence |
---|---|---|
CG8893 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8893 | 2002-03-20 | Blastp of sequenced clone |
CG8893 | 2003-01-01 | Sim4 clustering to Release 3 |
Gapdh2 | 2008-04-29 | Release 5.5 accounting |
Gapdh2 | 2008-08-15 | Release 5.9 accounting |
Gapdh2 | 2008-12-18 | 5.12 accounting |
1458 bp (1458 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094940
> RH55882.complete GATCTGACTTTGAACAATTTTTCGCCCGAGTTTTCGCCCATAGAAAGCGC TCAAAATTTCTCAGCCATCACAGTCGATTCCTTGCAAGCAAGCCGATAGA TAAACAAAAAGTTAACCATGTCGAAGATTGGTATCAATGGATTTGGTCGC ATCGGCCGCTTGGTTCTCCGCGCCGCCATTGATAAGGGCGCCAACGTTGT GGCCGTCAACGATCCCTTCATCGATGTGAACTACATGGTCTACCTGTTCA AGTTCGATTCGACCCACGGACGTTTTAAGGGCACCGTTGCCGCCGAGGGC GGTTTCCTGGTGGTCAACGGCCAGAAGATCACCGTCTTCAGCGAACGCGA CCCGGCCAACATCAACTGGGCCAGCGCTGGTGCCGAATACATCGTGGAGT CCACTGGCGTGTTCACCACCATCGACAAGGCATCCACTCACTTGAAGGGC GGTGCCAAGAAGGTTATCATCTCGGCCCCATCCGCCGATGCTCCCATGTT CGTTTGCGGCGTCAACTTGGATGCCTACAAGCCCGACATGAAGGTGGTCT CCAACGCATCGTGCACCACCAACTGCTTGGCTCCTCTGGCCAAGGTGATC AACGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTTCATGCCAC CACCGCTACCCAGAAGACCGTCGATGGACCTTCCGGCAAGTTGTGGCGTG ATGGACGTGGCGCTGCCCAGAACATCATTCCAGCTTCCACTGGAGCTGCC AAGGCCGTGGGCAAGGTTATCCCCGCCCTCAACGGTAAGCTCACCGGAAT GGCATTCCGTGTGCCCACTCCCAACGTTTCCGTGGTCGATTTGACCGTGC GCTTGGGCAAGGGTGCGTCCTATGATGAAATTAAGGCCAAGGTTCAGGAG GCCGCCAACGGACCCCTGAAGGGTATCCTGGGATACACCGATGAGGAGGT CGTTTCTACCGATTTCCTCAGCGACACCCACTCGTCGGTGTTCGATGCCA AGGCTGGCATTTCGCTAAACGACAAGTTCGTGAAGCTGATCTCTTGGTAC GACAACGAGTTTGGCTACTCCAACCGCGTCATCGACCTGATCAAGTACAT GCAGAGCAAGGATTAAATGTGGAACACCAAGAACACTACCCACCCACACT CTACGTAAAAGTTAAAGATTAGGGCGCGGTAGAATGGGGTGAGACACTTC AGAAACGGCCTGAAAATGGCATCACATAACTTATATATATATTGCTCCCC GGTGGAGCATCACCTACATACATATGCGCTATGCTCTGAAATGCTACTGT TTTCGCTCTTCAATTACCAGCCACATTGGAAAATTATTAATATAATACAT CCATTATACACATAAATATGTTTACTGTTGTTGAATAAAGTTTCACTCTG TGTGTAGTTTTAAAAATGCCGACTCATAAGCATTTAAATATTTAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15758170..15759515 | 98..1443 | 6700 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 3679441..3680442 | 1117..116 | 3330 | 88.8 | Minus |
chrX | 22417052 | chrX | 15758000..15758097 | 2..99 | 490 | 100 | Plus |
chr2R | 21145070 | chr2R | 12846568..12846966 | 836..438 | 420 | 73.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15868316..15869662 | 98..1444 | 6735 | 100 | Plus |
2R | 25286936 | 2R | 7792121..7793122 | 1117..116 | 3330 | 88.8 | Minus |
X | 23542271 | X | 15868146..15868243 | 2..99 | 490 | 100 | Plus |
2R | 25286936 | 2R | 16959374..16959772 | 836..438 | 420 | 73.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15876414..15877760 | 98..1444 | 6735 | 100 | Plus |
2R | 25260384 | 2R | 7793320..7794321 | 1117..116 | 3330 | 88.8 | Minus |
X | 23527363 | X | 15876244..15876341 | 2..99 | 490 | 100 | Plus |
2R | 25260384 | 2R | 16960702..16960861 | 707..548 | 245 | 76.8 | Minus |
2R | 25260384 | 2R | 16960876..16960971 | 533..438 | 165 | 78.1 | Minus |
2R | 25260384 | 2R | 16960350..16960415 | 1059..994 | 150 | 81.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15757999..15758097 | 1..99 | 98 | -> | Plus |
chrX | 15758172..15759515 | 100..1443 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RB | 1..999 | 118..1116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RB | 1..999 | 118..1116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 1..999 | 118..1116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RB | 1..999 | 118..1116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 1..999 | 118..1116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gapdh2-RA | 2..1443 | 2..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15868145..15868243 | 1..99 | 98 | -> | Plus |
X | 15868318..15869661 | 100..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15868145..15868243 | 1..99 | 98 | -> | Plus |
X | 15868318..15869661 | 100..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15868145..15868243 | 1..99 | 98 | -> | Plus |
X | 15868318..15869661 | 100..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15762178..15762276 | 1..99 | 98 | -> | Plus |
arm_X | 15762351..15763694 | 100..1443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15876416..15877759 | 100..1443 | 100 | Plus | |
X | 15876243..15876341 | 1..99 | 98 | -> | Plus |
Translation from 117 to 1115
> RH55882.pep MSKIGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTH GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFT TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVSNASCT TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA QNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA SYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISL NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17051-PA | 332 | GF17051-PA | 1..332 | 1..332 | 1729 | 98.5 | Plus |
Dana\GF13438-PA | 771 | GF13438-PA | 1..330 | 1..329 | 1170 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17924-PA | 332 | GG17924-PA | 1..332 | 1..332 | 1737 | 99.4 | Plus |
Dere\GG10711-PA | 332 | GG10711-PA | 1..332 | 1..332 | 1719 | 97.9 | Plus |
Dere\GG22232-PA | 351 | GG22232-PA | 1..333 | 1..332 | 1149 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21340-PA | 332 | GH21340-PA | 1..332 | 1..332 | 1710 | 97.3 | Plus |
Dgri\GH22833-PA | 352 | GH22833-PA | 1..333 | 1..332 | 1166 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1698 | 100 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1698 | 100 | Plus |
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20756-PA | 332 | GI20756-PA | 1..332 | 1..332 | 1719 | 97.6 | Plus |
Dmoj\GI21211-PA | 334 | GI21211-PA | 3..332 | 4..332 | 1156 | 65.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10260-PA | 366 | GL10260-PA | 1..331 | 1..331 | 1718 | 97.6 | Plus |
Dper\GL10495-PA | 364 | GL10495-PA | 1..333 | 1..332 | 1169 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Gapdh2-PA | 332 | GA21397-PA | 1..332 | 1..332 | 1731 | 98.5 | Plus |
Dpse\GA21475-PA | 364 | GA21475-PA | 1..333 | 1..332 | 1164 | 64.9 | Plus |
Dpse\GA27234-PA | 170 | GA27234-PA | 89..170 | 241..332 | 261 | 55.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22592-PA | 332 | GM22592-PA | 1..332 | 1..332 | 1735 | 99.4 | Plus |
Dsec\GM20020-PA | 344 | GM20020-PA | 1..333 | 1..332 | 1145 | 64 | Plus |
Dsec\GM20757-PA | 161 | GM20757-PA | 1..161 | 172..332 | 828 | 97.5 | Plus |
Dsec\GM20756-PA | 149 | GM20756-PA | 1..149 | 1..149 | 770 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25506-PA | 344 | GD25506-PA | 1..333 | 1..332 | 1140 | 63.7 | Plus |
Dsim\GD17248-PA | 147 | GD17248-PA | 1..143 | 1..143 | 747 | 99.3 | Plus |
Dsim\GD10219-PA | 86 | GD10219-PA | 3..86 | 249..332 | 426 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20492-PA | 332 | GJ20492-PA | 1..332 | 1..332 | 1720 | 97.9 | Plus |
Dvir\GJ20812-PA | 346 | GJ20812-PA | 1..333 | 1..332 | 1154 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17768-PA | 332 | GK17768-PA | 1..332 | 1..332 | 1721 | 97.9 | Plus |
Dwil\GK21310-PA | 428 | GK21310-PA | 1..335 | 1..332 | 1190 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17231-PA | 332 | GE17231-PA | 1..332 | 1..332 | 1746 | 100 | Plus |
Dyak\Gapdh1-PA | 332 | GE23629-PA | 1..332 | 1..332 | 1719 | 97.9 | Plus |
Dyak\GE14229-PA | 350 | GE14229-PA | 3..332 | 4..332 | 1158 | 64.8 | Plus |
Translation from 117 to 1115
> RH55882.hyp MSKIGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTH GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFT TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVSNASCT TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA QNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA SYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISL NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1698 | 100 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1698 | 100 | Plus |
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 64.9 | Plus |