Clone RH55882 Report

Search the DGRC for RH55882

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:558
Well:82
Vector:pFlc-1
Associated Gene/TranscriptGapdh2-RA
Protein status:RH55882.pep: gold
Preliminary Size:1325
Sequenced Size:1458

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8893 2002-01-01 Sim4 clustering to Release 2
CG8893 2002-03-20 Blastp of sequenced clone
CG8893 2003-01-01 Sim4 clustering to Release 3
Gapdh2 2008-04-29 Release 5.5 accounting
Gapdh2 2008-08-15 Release 5.9 accounting
Gapdh2 2008-12-18 5.12 accounting

Clone Sequence Records

RH55882.complete Sequence

1458 bp (1458 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094940

> RH55882.complete
GATCTGACTTTGAACAATTTTTCGCCCGAGTTTTCGCCCATAGAAAGCGC
TCAAAATTTCTCAGCCATCACAGTCGATTCCTTGCAAGCAAGCCGATAGA
TAAACAAAAAGTTAACCATGTCGAAGATTGGTATCAATGGATTTGGTCGC
ATCGGCCGCTTGGTTCTCCGCGCCGCCATTGATAAGGGCGCCAACGTTGT
GGCCGTCAACGATCCCTTCATCGATGTGAACTACATGGTCTACCTGTTCA
AGTTCGATTCGACCCACGGACGTTTTAAGGGCACCGTTGCCGCCGAGGGC
GGTTTCCTGGTGGTCAACGGCCAGAAGATCACCGTCTTCAGCGAACGCGA
CCCGGCCAACATCAACTGGGCCAGCGCTGGTGCCGAATACATCGTGGAGT
CCACTGGCGTGTTCACCACCATCGACAAGGCATCCACTCACTTGAAGGGC
GGTGCCAAGAAGGTTATCATCTCGGCCCCATCCGCCGATGCTCCCATGTT
CGTTTGCGGCGTCAACTTGGATGCCTACAAGCCCGACATGAAGGTGGTCT
CCAACGCATCGTGCACCACCAACTGCTTGGCTCCTCTGGCCAAGGTGATC
AACGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTTCATGCCAC
CACCGCTACCCAGAAGACCGTCGATGGACCTTCCGGCAAGTTGTGGCGTG
ATGGACGTGGCGCTGCCCAGAACATCATTCCAGCTTCCACTGGAGCTGCC
AAGGCCGTGGGCAAGGTTATCCCCGCCCTCAACGGTAAGCTCACCGGAAT
GGCATTCCGTGTGCCCACTCCCAACGTTTCCGTGGTCGATTTGACCGTGC
GCTTGGGCAAGGGTGCGTCCTATGATGAAATTAAGGCCAAGGTTCAGGAG
GCCGCCAACGGACCCCTGAAGGGTATCCTGGGATACACCGATGAGGAGGT
CGTTTCTACCGATTTCCTCAGCGACACCCACTCGTCGGTGTTCGATGCCA
AGGCTGGCATTTCGCTAAACGACAAGTTCGTGAAGCTGATCTCTTGGTAC
GACAACGAGTTTGGCTACTCCAACCGCGTCATCGACCTGATCAAGTACAT
GCAGAGCAAGGATTAAATGTGGAACACCAAGAACACTACCCACCCACACT
CTACGTAAAAGTTAAAGATTAGGGCGCGGTAGAATGGGGTGAGACACTTC
AGAAACGGCCTGAAAATGGCATCACATAACTTATATATATATTGCTCCCC
GGTGGAGCATCACCTACATACATATGCGCTATGCTCTGAAATGCTACTGT
TTTCGCTCTTCAATTACCAGCCACATTGGAAAATTATTAATATAATACAT
CCATTATACACATAAATATGTTTACTGTTGTTGAATAAAGTTTCACTCTG
TGTGTAGTTTTAAAAATGCCGACTCATAAGCATTTAAATATTTAAAAAAA
AAAAAAAA

RH55882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-RA 1500 Gapdh2-RA 27..1469 2..1444 7215 100 Plus
Gapdh2-RB 1359 Gapdh2-RB 14..1359 98..1443 6730 100 Plus
Gapdh1-RB 1285 Gapdh1-RB 61..1062 116..1117 3330 88.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15758170..15759515 98..1443 6700 99.9 Plus
chr2R 21145070 chr2R 3679441..3680442 1117..116 3330 88.8 Minus
chrX 22417052 chrX 15758000..15758097 2..99 490 100 Plus
chr2R 21145070 chr2R 12846568..12846966 836..438 420 73.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15868316..15869662 98..1444 6735 100 Plus
2R 25286936 2R 7792121..7793122 1117..116 3330 88.8 Minus
X 23542271 X 15868146..15868243 2..99 490 100 Plus
2R 25286936 2R 16959374..16959772 836..438 420 73.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15876414..15877760 98..1444 6735 100 Plus
2R 25260384 2R 7793320..7794321 1117..116 3330 88.8 Minus
X 23527363 X 15876244..15876341 2..99 490 100 Plus
2R 25260384 2R 16960702..16960861 707..548 245 76.8 Minus
2R 25260384 2R 16960876..16960971 533..438 165 78.1 Minus
2R 25260384 2R 16960350..16960415 1059..994 150 81.8 Minus
Blast to na_te.dros performed on 2019-03-16 04:29:28 has no hits.

RH55882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:30:17 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15757999..15758097 1..99 98 -> Plus
chrX 15758172..15759515 100..1443 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:04 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RB 1..999 118..1116 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:25:28 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RB 1..999 118..1116 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:10 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 1..999 118..1116 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:55 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RB 1..999 118..1116 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:40:56 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 1..999 118..1116 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:52:02 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 2..1443 2..1443 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:25:28 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 2..1443 2..1443 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:10 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 2..1443 2..1443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:55 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 2..1443 2..1443 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:40:56 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 2..1443 2..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:17 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
X 15868145..15868243 1..99 98 -> Plus
X 15868318..15869661 100..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:17 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
X 15868145..15868243 1..99 98 -> Plus
X 15868318..15869661 100..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:17 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
X 15868145..15868243 1..99 98 -> Plus
X 15868318..15869661 100..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:10 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15762178..15762276 1..99 98 -> Plus
arm_X 15762351..15763694 100..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:03 Download gff for RH55882.complete
Subject Subject Range Query Range Percent Splice Strand
X 15876416..15877759 100..1443 100   Plus
X 15876243..15876341 1..99 98 -> Plus

RH55882.pep Sequence

Translation from 117 to 1115

> RH55882.pep
MSKIGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
SYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*

RH55882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17051-PA 332 GF17051-PA 1..332 1..332 1729 98.5 Plus
Dana\GF13438-PA 771 GF13438-PA 1..330 1..329 1170 63.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17924-PA 332 GG17924-PA 1..332 1..332 1737 99.4 Plus
Dere\GG10711-PA 332 GG10711-PA 1..332 1..332 1719 97.9 Plus
Dere\GG22232-PA 351 GG22232-PA 1..333 1..332 1149 64 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21340-PA 332 GH21340-PA 1..332 1..332 1710 97.3 Plus
Dgri\GH22833-PA 352 GH22833-PA 1..333 1..332 1166 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-PC 332 CG8893-PC 1..332 1..332 1698 100 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..332 1698 100 Plus
Gapdh1-PB 332 CG12055-PB 1..332 1..332 1665 97.3 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..332 1665 97.3 Plus
CG9010-PA 343 CG9010-PA 1..333 1..332 1114 64.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20756-PA 332 GI20756-PA 1..332 1..332 1719 97.6 Plus
Dmoj\GI21211-PA 334 GI21211-PA 3..332 4..332 1156 65.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10260-PA 366 GL10260-PA 1..331 1..331 1718 97.6 Plus
Dper\GL10495-PA 364 GL10495-PA 1..333 1..332 1169 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gapdh2-PA 332 GA21397-PA 1..332 1..332 1731 98.5 Plus
Dpse\GA21475-PA 364 GA21475-PA 1..333 1..332 1164 64.9 Plus
Dpse\GA27234-PA 170 GA27234-PA 89..170 241..332 261 55.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22592-PA 332 GM22592-PA 1..332 1..332 1735 99.4 Plus
Dsec\GM20020-PA 344 GM20020-PA 1..333 1..332 1145 64 Plus
Dsec\GM20757-PA 161 GM20757-PA 1..161 172..332 828 97.5 Plus
Dsec\GM20756-PA 149 GM20756-PA 1..149 1..149 770 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25506-PA 344 GD25506-PA 1..333 1..332 1140 63.7 Plus
Dsim\GD17248-PA 147 GD17248-PA 1..143 1..143 747 99.3 Plus
Dsim\GD10219-PA 86 GD10219-PA 3..86 249..332 426 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20492-PA 332 GJ20492-PA 1..332 1..332 1720 97.9 Plus
Dvir\GJ20812-PA 346 GJ20812-PA 1..333 1..332 1154 64 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17768-PA 332 GK17768-PA 1..332 1..332 1721 97.9 Plus
Dwil\GK21310-PA 428 GK21310-PA 1..335 1..332 1190 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17231-PA 332 GE17231-PA 1..332 1..332 1746 100 Plus
Dyak\Gapdh1-PA 332 GE23629-PA 1..332 1..332 1719 97.9 Plus
Dyak\GE14229-PA 350 GE14229-PA 3..332 4..332 1158 64.8 Plus

RH55882.hyp Sequence

Translation from 117 to 1115

> RH55882.hyp
MSKIGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
SYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*

RH55882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-PC 332 CG8893-PC 1..332 1..332 1698 100 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..332 1698 100 Plus
Gapdh1-PB 332 CG12055-PB 1..332 1..332 1665 97.3 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..332 1665 97.3 Plus
CG9010-PA 343 CG9010-PA 1..333 1..332 1114 64.9 Plus