BDGP Sequence Production Resources |
Search the DGRC for RH56077
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 560 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | by-RA |
Protein status: | RH56077.pep: gold |
Preliminary Size: | 2166 |
Sequenced Size: | 3012 |
Gene | Date | Evidence |
---|---|---|
CG9379 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9379 | 2002-03-28 | Blastp of sequenced clone |
CG9379 | 2003-01-01 | Sim4 clustering to Release 3 |
by | 2008-04-29 | Release 5.5 accounting |
by | 2008-08-15 | Release 5.9 accounting |
by | 2008-12-18 | 5.12 accounting |
3012 bp (3012 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094941
> RH56077.complete CAGGAATCAGTCTTTTGGAATTCGCGAAACAATGCGGACGCCGTACGAAG AAAGCGCTGCTGCCGCCGACCACAAATATCAATACCAATACACCGCGGCC AATAATAACAATAATTACTATAAAAACTATAATGTGAATGGCAATGGGCA GGCGAATGGAAATGGGAATCTAAGTGGAATTGGTAATGGAAATGGAATTG GAAACGGCAATGGATATGGAATACCTTATCACGCGCGCGAGAACTCGCTG CCATTTAGCTATGGCATAGCCAAAACTTCGACACCGTTGCGAAAAACTCC GACACCGACGCGAGTGGATAGTTTTCTAGACTTTGATTTCGGGCCAACGA ATACGAATGTGAATTCGAATAGTTCTAGCAATAATGGCGGTACTGGCGAT ATGATAAAGCCACCAACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAAC GCTGGGCAATGCCGTTAGTCCCACCAGTTCGACCAATACCAACACCATAG CCAATACATACCACTACACGTCGAGCAGCGCAACGCCGACGCCGGTGAGA GATAATTTCGAGCAGCTGCTGCGGGAGCGACGCGAAAAGGTCTACAATGA ATATAGGAATCTGGATAGGGAGTCGTCCGGGGAGCGGGCCAGAGTGGCAC CCGCTCCGCCGCAGAGGCAATACTACCCGAGCGATGGCTATGGAATTGGG CTGAAGAACGATAGCAATGGAACCCTATACCGCAAGAGCCCCTCGTCTAA TGGGAAATCAACGAAATACAACTACGATTTTGAGTTCAATCTGAATCTGG ATGATGTTAGGCCCGAACCTACACCGTATACCACGAGGAATATTCACTTC GAGGATCTGCGGCTGGATCAGGATGTGCCAGATGGCGTGGTCAATCGGCG GACCATGGAACGCAATTATCACACAATTAACAGCTTGGAAACGACCCACA AACGCCAGCAGTTGGAGCCGTTGGAGCAACTGGGCGCCGTTTATGGCCAG AACCACATGGAGGAGACACTCACGCGCACTCGTCGCGATCTCTCCGCATC CACATCGACATCCAAGTCCACCTCGCCATTGCCGGCAATAGGAGTACCAG CTATAGCACCAGCTTCGCCCATTTATGCCACCAGTACGAAGAGAGTGAGC AACCCAAATACCAATGGCCAACAGCAGATGACGCCTAGTCCCACCAGTAG GCCAGAAACGCCCGCCTTTCCGGTCACGCCGCGCACGCCTTTTGGGGCAT CATCATCATCATCTGCGTCTCTGGCGCCGACGACCCAGTTGCCCCCAGAG TCGATCTACCAAACAGGGCCACGTCGTGGCGTACCGCCTGCACTGCAGCC ACTCGAGGTGTCCGCCGATTCCGTACAATTTGCCCGTAGTTCGTCCCAGT TCTGGTACAAACCAAATCTCACTCGCGAAGATGCCATCGCTCTGCTGGCC TCTGCCCAGCCGGGCACGTTCCTGGTCAGGGACTCCACCACGTACAAGGA TTCCTATGGCCTGGTGGTGCGGGTGTCCCAACCGCCTCCCGGTTCACAGG AGCTGGTGCGTCACTTCCTCATCGAGCCCACGAAGGGGGGAGTGCATCTG AAGGGCTGCGATGACGAGCCGGTGTTCACTTCACTGTCCGCCCTCGTCTT CGAGCATTCCATAAGCCAGCTGGCGTTGCCATGTCTCCTCCGTCTGCCCG ATCGGGATATAGTACCACCGGTGCGGGCCACAACCCCTGCCCAGCAGCAT CTATTGGCCCACGGAGCAGCCACCAATGTGCTGTGGCTCTACTCCTGCGA CACGGAATCGCTGACAGGAAACGAGGCCATCCGCAAGGCCATCCGCCAGA TGTACGGTCAGCAACCCTTGCCGCAGCCCACGGAGGTGCACTTCAAGGTC TCCTCGCAGGGCATCACGCTCACGGACAATACGCGCAAGAAGTTCTTCCG GAAGCACTACAAGGCGGATGTTATCTCGCACTGTGCCATCGATCCGGAGA ACAGGATGTGGACCAGTGAGGGCGAGTCTGACAAGAAGACCATCTTCGCC TTCGTGGCCAGGAGGTCGCACAGCTCCACGGACAACCAGTGCCATGTGTT CTGCGACCTGTCCGTCAGCCAGCCGGCGGCGGCGATTGTCTCGTTCGCCA ATCGGACACTGCCCACCGAAAAGCTGCGCAACTACGTCCTGTAGGAGGGA GGGGGCGTGGCACGGGTCAACAGGTCAGCAGGCTGGATTCCACTTCCATC CGTGGAGTGGAATGGCGCACAAGCAGGCCAGTGGAATCGGAATCATGCGG AATTATGCGGAGGAGGAGCCCAGTGCTGCAAGATGTACTAACTAATCACT TTACGAAATTGTGTCTTGCGATATAATGAGCTTAACTGCGAATATGTTAA CAGGAATGATGTCAGCCGTAGTTTATTTAGACACGCACACACTCAGAAGT CGGCGATATTTATGGCGAAGCTAAAACATATGTACACATGGGTACTATCA ACTTGAATTGACTAAATGCACAGTGGGACAAGTGGATGGCCGAGTTCGAT AAGATTGGTAACTATTGGAAACGCCACTGATTCATATTTGTTTATATGCC CAAGTTGTAAACAAAGCCATGAAGATTGTGTTAAAATTTTTGGAAATTCC AACTGGCATTTCAAGGAATCTCGTACCACTGTGCTGGGTGGCGAATTGAA ACTGATCACCGAAGTTGACTGTTTATTAGCAAAAACAGTATGGATGTGTA TATATGGGCGAGTTGTGTGTTTTTATATAGGGTGCGCTTGTCAGACAAAC GGAATTAAACTAATCTACCACATAATTTTAAACCGATTAATGTTAGTTTA GAAAGTTGTTAAATAAAACCCAAAAGTACAAGCCAGAGAGCTTGTTCCCT AATTTATACCAGTAATATCTATATAAATATATGTATGTATATGCTTAAGC ACTACTAATGCAGTCAATATAAATAAAGTGCAATGTTGTTAAACAGAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
by-RA | 3266 | by-RA | 224..3218 | 4..2997 | 14935 | 99.9 | Plus |
by.b | 3266 | by.b | 224..3218 | 4..2997 | 14935 | 99.9 | Plus |
by-RD | 4379 | by-RD | 1..2274 | 4..2277 | 11370 | 100 | Plus |
by-RD | 4379 | by-RD | 3760..4379 | 2282..2900 | 3060 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5354066..5354791 | 2277..2996 | 99 | <- | Minus |
chr3R | 5356573..5358845 | 1..2276 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2163 | 32..2194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RC | 1..2163 | 32..2194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2163 | 32..2194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2163 | 32..2194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2163 | 32..2194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2994 | 4..2996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2994 | 4..2996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2993 | 5..2996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2994 | 4..2996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
by-RA | 1..2993 | 5..2996 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9528238..9528958 | 2277..2996 | 99 | <- | Minus |
3R | 9530740..9533012 | 1..2276 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9528238..9528958 | 2277..2996 | 99 | <- | Minus |
3R | 9530740..9533012 | 1..2276 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9528238..9528958 | 2277..2996 | 99 | <- | Minus |
3R | 9530740..9533012 | 1..2276 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5353960..5354680 | 2277..2996 | 99 | <- | Minus |
arm_3R | 5356462..5358734 | 1..2276 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9269069..9269789 | 2277..2996 | 99 | <- | Minus |
3R | 9271571..9273843 | 1..2276 | 99 | Minus |
Translation from 4 to 2193
> RH56077.hyp NQSFGIRETMRTPYEESAAAADHKYQYQYTAANNNNNYYKNYNVNGNGQA NGNGNLSGIGNGNGIGNGNGYGIPYHARENSLPFSYGIAKTSTPLRKTPT PTRVDSFLDFDFGPTNTNVNSNSSSNNGGTGDMIKPPTRLTSPLLVRKTL GNAVSPTSSTNTNTIANTYHYTSSSATPTPVRDNFEQLLRERREKVYNEY RNLDRESSGERARVAPAPPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNG KSTKYNYDFEFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRT MERNYHTINSLETTHKRQQLEPLEQLGAVYGQNHMEETLTRTRRDLSAST STSKSTSPLPAIGVPAIAPASPIYATSTKRVSNPNTNGQQQMTPSPTSRP ETPAFPVTPRTPFGASSSSSASLAPTTQLPPESIYQTGPRRGVPPALQPL EVSADSVQFARSSSQFWYKPNLTREDAIALLASAQPGTFLVRDSTTYKDS YGLVVRVSQPPPGSQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSALVFE HSISQLALPCLLRLPDRDIVPPVRATTPAQQHLLAHGAATNVLWLYSCDT ESLTGNEAIRKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRK HYKADVISHCAIDPENRMWTSEGESDKKTIFAFVARRSHSSTDNQCHVFC DLSVSQPAAAIVSFANRTLPTEKLRNYVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
by-PC | 720 | CG9379-PC | 1..720 | 10..729 | 3792 | 100 | Plus |
by-PD | 720 | CG9379-PD | 1..720 | 10..729 | 3792 | 100 | Plus |
by-PA | 720 | CG9379-PA | 1..720 | 10..729 | 3792 | 100 | Plus |
CG33993-PB | 258 | CG33993-PB | 123..215 | 467..565 | 153 | 39.4 | Plus |
Translation from 31 to 2193
> RH56077.pep MRTPYEESAAAADHKYQYQYTAANNNNNYYKNYNVNGNGQANGNGNLSGI GNGNGIGNGNGYGIPYHARENSLPFSYGIAKTSTPLRKTPTPTRVDSFLD FDFGPTNTNVNSNSSSNNGGTGDMIKPPTRLTSPLLVRKTLGNAVSPTSS TNTNTIANTYHYTSSSATPTPVRDNFEQLLRERREKVYNEYRNLDRESSG ERARVAPAPPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNGKSTKYNYDF EFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRTMERNYHTIN SLETTHKRQQLEPLEQLGAVYGQNHMEETLTRTRRDLSASTSTSKSTSPL PAIGVPAIAPASPIYATSTKRVSNPNTNGQQQMTPSPTSRPETPAFPVTP RTPFGASSSSSASLAPTTQLPPESIYQTGPRRGVPPALQPLEVSADSVQF ARSSSQFWYKPNLTREDAIALLASAQPGTFLVRDSTTYKDSYGLVVRVSQ PPPGSQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSALVFEHSISQLALP CLLRLPDRDIVPPVRATTPAQQHLLAHGAATNVLWLYSCDTESLTGNEAI RKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRKHYKADVISH CAIDPENRMWTSEGESDKKTIFAFVARRSHSSTDNQCHVFCDLSVSQPAA AIVSFANRTLPTEKLRNYVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16055-PA | 730 | GF16055-PA | 1..730 | 1..720 | 2485 | 77.4 | Plus |
Dana\GF23755-PA | 424 | GF23755-PA | 291..383 | 458..556 | 158 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17364-PA | 730 | GG17364-PA | 1..730 | 1..720 | 3197 | 93.3 | Plus |
Dere\GG14099-PA | 426 | GG14099-PA | 291..383 | 458..556 | 158 | 39.4 | Plus |
Dere\GG15304-PA | 478 | GG15304-PA | 346..439 | 458..556 | 154 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19392-PA | 1708 | GH19392-PA | 1198..1708 | 261..720 | 1403 | 57.7 | Plus |
Dgri\GH19594-PA | 540 | GH19594-PA | 247..530 | 442..710 | 840 | 56.3 | Plus |
Dgri\GH16450-PA | 453 | GH16450-PA | 315..407 | 458..556 | 159 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
by-PC | 720 | CG9379-PC | 1..720 | 1..720 | 3792 | 100 | Plus |
by-PD | 720 | CG9379-PD | 1..720 | 1..720 | 3792 | 100 | Plus |
by-PA | 720 | CG9379-PA | 1..720 | 1..720 | 3792 | 100 | Plus |
CG33993-PB | 258 | CG33993-PB | 123..215 | 458..556 | 153 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22597-PA | 735 | GI22597-PA | 59..735 | 64..720 | 1882 | 58.8 | Plus |
Dmoj\GI23987-PA | 541 | GI23987-PA | 249..533 | 442..711 | 833 | 55.4 | Plus |
Dmoj\GI16708-PA | 425 | GI16708-PA | 289..390 | 458..568 | 163 | 39.6 | Plus |
Dmoj\GI16674-PA | 481 | GI16674-PA | 351..444 | 458..556 | 158 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22225-PA | 726 | GL22225-PA | 1..726 | 1..720 | 2375 | 70.2 | Plus |
Dper\GL12292-PA | 1975 | GL12292-PA | 1683..1969 | 444..714 | 839 | 56.4 | Plus |
Dper\GL16312-PA | 426 | GL16312-PA | 291..383 | 458..556 | 159 | 39.4 | Plus |
Dper\GL15534-PA | 487 | GL15534-PA | 339..447 | 443..556 | 156 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27425-PA | 727 | GA27425-PA | 1..727 | 1..720 | 2392 | 70.5 | Plus |
Dpse\GA16878-PA | 487 | GA16878-PA | 339..447 | 443..556 | 157 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26249-PA | 722 | GM26249-PA | 1..722 | 1..720 | 3750 | 97.8 | Plus |
Dsec\GM13883-PA | 418 | GM13883-PA | 283..394 | 458..582 | 160 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20789-PA | 714 | GD20789-PA | 1..714 | 1..720 | 3693 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10315-PA | 737 | GJ10315-PA | 1..737 | 1..720 | 1903 | 56 | Plus |
Dvir\GJ23623-PA | 542 | GJ23623-PA | 179..535 | 381..713 | 851 | 48 | Plus |
Dvir\GJ12450-PA | 419 | GJ12450-PA | 283..375 | 458..556 | 162 | 40.4 | Plus |
Dvir\GJ12926-PA | 494 | GJ12926-PA | 364..457 | 458..556 | 159 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13836-PA | 729 | GK13836-PA | 50..729 | 64..720 | 2055 | 65.8 | Plus |
Dwil\GK12916-PA | 555 | GK12916-PA | 209..549 | 390..714 | 892 | 52.9 | Plus |
Dwil\GK17294-PA | 457 | GK17294-PA | 281..373 | 458..556 | 159 | 39.4 | Plus |
Dwil\GK16887-PA | 460 | GK16887-PA | 325..418 | 458..556 | 154 | 37.4 | Plus |