Clone RH56077 Report

Search the DGRC for RH56077

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:560
Well:77
Vector:pFlc-1
Associated Gene/Transcriptby-RA
Protein status:RH56077.pep: gold
Preliminary Size:2166
Sequenced Size:3012

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9379 2002-01-01 Sim4 clustering to Release 2
CG9379 2002-03-28 Blastp of sequenced clone
CG9379 2003-01-01 Sim4 clustering to Release 3
by 2008-04-29 Release 5.5 accounting
by 2008-08-15 Release 5.9 accounting
by 2008-12-18 5.12 accounting

Clone Sequence Records

RH56077.complete Sequence

3012 bp (3012 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094941

> RH56077.complete
CAGGAATCAGTCTTTTGGAATTCGCGAAACAATGCGGACGCCGTACGAAG
AAAGCGCTGCTGCCGCCGACCACAAATATCAATACCAATACACCGCGGCC
AATAATAACAATAATTACTATAAAAACTATAATGTGAATGGCAATGGGCA
GGCGAATGGAAATGGGAATCTAAGTGGAATTGGTAATGGAAATGGAATTG
GAAACGGCAATGGATATGGAATACCTTATCACGCGCGCGAGAACTCGCTG
CCATTTAGCTATGGCATAGCCAAAACTTCGACACCGTTGCGAAAAACTCC
GACACCGACGCGAGTGGATAGTTTTCTAGACTTTGATTTCGGGCCAACGA
ATACGAATGTGAATTCGAATAGTTCTAGCAATAATGGCGGTACTGGCGAT
ATGATAAAGCCACCAACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAAC
GCTGGGCAATGCCGTTAGTCCCACCAGTTCGACCAATACCAACACCATAG
CCAATACATACCACTACACGTCGAGCAGCGCAACGCCGACGCCGGTGAGA
GATAATTTCGAGCAGCTGCTGCGGGAGCGACGCGAAAAGGTCTACAATGA
ATATAGGAATCTGGATAGGGAGTCGTCCGGGGAGCGGGCCAGAGTGGCAC
CCGCTCCGCCGCAGAGGCAATACTACCCGAGCGATGGCTATGGAATTGGG
CTGAAGAACGATAGCAATGGAACCCTATACCGCAAGAGCCCCTCGTCTAA
TGGGAAATCAACGAAATACAACTACGATTTTGAGTTCAATCTGAATCTGG
ATGATGTTAGGCCCGAACCTACACCGTATACCACGAGGAATATTCACTTC
GAGGATCTGCGGCTGGATCAGGATGTGCCAGATGGCGTGGTCAATCGGCG
GACCATGGAACGCAATTATCACACAATTAACAGCTTGGAAACGACCCACA
AACGCCAGCAGTTGGAGCCGTTGGAGCAACTGGGCGCCGTTTATGGCCAG
AACCACATGGAGGAGACACTCACGCGCACTCGTCGCGATCTCTCCGCATC
CACATCGACATCCAAGTCCACCTCGCCATTGCCGGCAATAGGAGTACCAG
CTATAGCACCAGCTTCGCCCATTTATGCCACCAGTACGAAGAGAGTGAGC
AACCCAAATACCAATGGCCAACAGCAGATGACGCCTAGTCCCACCAGTAG
GCCAGAAACGCCCGCCTTTCCGGTCACGCCGCGCACGCCTTTTGGGGCAT
CATCATCATCATCTGCGTCTCTGGCGCCGACGACCCAGTTGCCCCCAGAG
TCGATCTACCAAACAGGGCCACGTCGTGGCGTACCGCCTGCACTGCAGCC
ACTCGAGGTGTCCGCCGATTCCGTACAATTTGCCCGTAGTTCGTCCCAGT
TCTGGTACAAACCAAATCTCACTCGCGAAGATGCCATCGCTCTGCTGGCC
TCTGCCCAGCCGGGCACGTTCCTGGTCAGGGACTCCACCACGTACAAGGA
TTCCTATGGCCTGGTGGTGCGGGTGTCCCAACCGCCTCCCGGTTCACAGG
AGCTGGTGCGTCACTTCCTCATCGAGCCCACGAAGGGGGGAGTGCATCTG
AAGGGCTGCGATGACGAGCCGGTGTTCACTTCACTGTCCGCCCTCGTCTT
CGAGCATTCCATAAGCCAGCTGGCGTTGCCATGTCTCCTCCGTCTGCCCG
ATCGGGATATAGTACCACCGGTGCGGGCCACAACCCCTGCCCAGCAGCAT
CTATTGGCCCACGGAGCAGCCACCAATGTGCTGTGGCTCTACTCCTGCGA
CACGGAATCGCTGACAGGAAACGAGGCCATCCGCAAGGCCATCCGCCAGA
TGTACGGTCAGCAACCCTTGCCGCAGCCCACGGAGGTGCACTTCAAGGTC
TCCTCGCAGGGCATCACGCTCACGGACAATACGCGCAAGAAGTTCTTCCG
GAAGCACTACAAGGCGGATGTTATCTCGCACTGTGCCATCGATCCGGAGA
ACAGGATGTGGACCAGTGAGGGCGAGTCTGACAAGAAGACCATCTTCGCC
TTCGTGGCCAGGAGGTCGCACAGCTCCACGGACAACCAGTGCCATGTGTT
CTGCGACCTGTCCGTCAGCCAGCCGGCGGCGGCGATTGTCTCGTTCGCCA
ATCGGACACTGCCCACCGAAAAGCTGCGCAACTACGTCCTGTAGGAGGGA
GGGGGCGTGGCACGGGTCAACAGGTCAGCAGGCTGGATTCCACTTCCATC
CGTGGAGTGGAATGGCGCACAAGCAGGCCAGTGGAATCGGAATCATGCGG
AATTATGCGGAGGAGGAGCCCAGTGCTGCAAGATGTACTAACTAATCACT
TTACGAAATTGTGTCTTGCGATATAATGAGCTTAACTGCGAATATGTTAA
CAGGAATGATGTCAGCCGTAGTTTATTTAGACACGCACACACTCAGAAGT
CGGCGATATTTATGGCGAAGCTAAAACATATGTACACATGGGTACTATCA
ACTTGAATTGACTAAATGCACAGTGGGACAAGTGGATGGCCGAGTTCGAT
AAGATTGGTAACTATTGGAAACGCCACTGATTCATATTTGTTTATATGCC
CAAGTTGTAAACAAAGCCATGAAGATTGTGTTAAAATTTTTGGAAATTCC
AACTGGCATTTCAAGGAATCTCGTACCACTGTGCTGGGTGGCGAATTGAA
ACTGATCACCGAAGTTGACTGTTTATTAGCAAAAACAGTATGGATGTGTA
TATATGGGCGAGTTGTGTGTTTTTATATAGGGTGCGCTTGTCAGACAAAC
GGAATTAAACTAATCTACCACATAATTTTAAACCGATTAATGTTAGTTTA
GAAAGTTGTTAAATAAAACCCAAAAGTACAAGCCAGAGAGCTTGTTCCCT
AATTTATACCAGTAATATCTATATAAATATATGTATGTATATGCTTAAGC
ACTACTAATGCAGTCAATATAAATAAAGTGCAATGTTGTTAAACAGAAAA
AAAAAAAAAAAA

RH56077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
by-RA 3266 by-RA 224..3218 4..2997 14935 99.9 Plus
by.b 3266 by.b 224..3218 4..2997 14935 99.9 Plus
by-RD 4379 by-RD 1..2274 4..2277 11370 100 Plus
by-RD 4379 by-RD 3760..4379 2282..2900 3060 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5356572..5358845 2277..4 11310 99.8 Minus
chr3R 27901430 chr3R 5354066..5354795 2996..2273 3490 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9530739..9533012 2277..4 11370 100 Minus
3R 32079331 3R 9528237..9528962 2997..2273 3580 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9271570..9273843 2277..4 11370 100 Minus
3R 31820162 3R 9269068..9269793 2997..2273 3590 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 20:52:18 has no hits.

RH56077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:53:04 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5354066..5354791 2277..2996 99 <- Minus
chr3R 5356573..5358845 1..2276 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:06 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2163 32..2194 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:37 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RC 1..2163 32..2194 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:32 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2163 32..2194 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:14 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2163 32..2194 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:38 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2163 32..2194 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:32 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2994 4..2996 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:36 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2994 4..2996 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:32 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2993 5..2996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:14 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2994 4..2996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:38 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
by-RA 1..2993 5..2996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:04 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9528238..9528958 2277..2996 99 <- Minus
3R 9530740..9533012 1..2276 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:04 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9528238..9528958 2277..2996 99 <- Minus
3R 9530740..9533012 1..2276 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:04 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9528238..9528958 2277..2996 99 <- Minus
3R 9530740..9533012 1..2276 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:32 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5353960..5354680 2277..2996 99 <- Minus
arm_3R 5356462..5358734 1..2276 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:01 Download gff for RH56077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9269069..9269789 2277..2996 99 <- Minus
3R 9271571..9273843 1..2276 99   Minus

RH56077.hyp Sequence

Translation from 4 to 2193

> RH56077.hyp
NQSFGIRETMRTPYEESAAAADHKYQYQYTAANNNNNYYKNYNVNGNGQA
NGNGNLSGIGNGNGIGNGNGYGIPYHARENSLPFSYGIAKTSTPLRKTPT
PTRVDSFLDFDFGPTNTNVNSNSSSNNGGTGDMIKPPTRLTSPLLVRKTL
GNAVSPTSSTNTNTIANTYHYTSSSATPTPVRDNFEQLLRERREKVYNEY
RNLDRESSGERARVAPAPPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNG
KSTKYNYDFEFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRT
MERNYHTINSLETTHKRQQLEPLEQLGAVYGQNHMEETLTRTRRDLSAST
STSKSTSPLPAIGVPAIAPASPIYATSTKRVSNPNTNGQQQMTPSPTSRP
ETPAFPVTPRTPFGASSSSSASLAPTTQLPPESIYQTGPRRGVPPALQPL
EVSADSVQFARSSSQFWYKPNLTREDAIALLASAQPGTFLVRDSTTYKDS
YGLVVRVSQPPPGSQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSALVFE
HSISQLALPCLLRLPDRDIVPPVRATTPAQQHLLAHGAATNVLWLYSCDT
ESLTGNEAIRKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRK
HYKADVISHCAIDPENRMWTSEGESDKKTIFAFVARRSHSSTDNQCHVFC
DLSVSQPAAAIVSFANRTLPTEKLRNYVL*

RH56077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
by-PC 720 CG9379-PC 1..720 10..729 3792 100 Plus
by-PD 720 CG9379-PD 1..720 10..729 3792 100 Plus
by-PA 720 CG9379-PA 1..720 10..729 3792 100 Plus
CG33993-PB 258 CG33993-PB 123..215 467..565 153 39.4 Plus

RH56077.pep Sequence

Translation from 31 to 2193

> RH56077.pep
MRTPYEESAAAADHKYQYQYTAANNNNNYYKNYNVNGNGQANGNGNLSGI
GNGNGIGNGNGYGIPYHARENSLPFSYGIAKTSTPLRKTPTPTRVDSFLD
FDFGPTNTNVNSNSSSNNGGTGDMIKPPTRLTSPLLVRKTLGNAVSPTSS
TNTNTIANTYHYTSSSATPTPVRDNFEQLLRERREKVYNEYRNLDRESSG
ERARVAPAPPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNGKSTKYNYDF
EFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRTMERNYHTIN
SLETTHKRQQLEPLEQLGAVYGQNHMEETLTRTRRDLSASTSTSKSTSPL
PAIGVPAIAPASPIYATSTKRVSNPNTNGQQQMTPSPTSRPETPAFPVTP
RTPFGASSSSSASLAPTTQLPPESIYQTGPRRGVPPALQPLEVSADSVQF
ARSSSQFWYKPNLTREDAIALLASAQPGTFLVRDSTTYKDSYGLVVRVSQ
PPPGSQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSALVFEHSISQLALP
CLLRLPDRDIVPPVRATTPAQQHLLAHGAATNVLWLYSCDTESLTGNEAI
RKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRKHYKADVISH
CAIDPENRMWTSEGESDKKTIFAFVARRSHSSTDNQCHVFCDLSVSQPAA
AIVSFANRTLPTEKLRNYVL*

RH56077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16055-PA 730 GF16055-PA 1..730 1..720 2485 77.4 Plus
Dana\GF23755-PA 424 GF23755-PA 291..383 458..556 158 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17364-PA 730 GG17364-PA 1..730 1..720 3197 93.3 Plus
Dere\GG14099-PA 426 GG14099-PA 291..383 458..556 158 39.4 Plus
Dere\GG15304-PA 478 GG15304-PA 346..439 458..556 154 36.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19392-PA 1708 GH19392-PA 1198..1708 261..720 1403 57.7 Plus
Dgri\GH19594-PA 540 GH19594-PA 247..530 442..710 840 56.3 Plus
Dgri\GH16450-PA 453 GH16450-PA 315..407 458..556 159 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
by-PC 720 CG9379-PC 1..720 1..720 3792 100 Plus
by-PD 720 CG9379-PD 1..720 1..720 3792 100 Plus
by-PA 720 CG9379-PA 1..720 1..720 3792 100 Plus
CG33993-PB 258 CG33993-PB 123..215 458..556 153 39.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22597-PA 735 GI22597-PA 59..735 64..720 1882 58.8 Plus
Dmoj\GI23987-PA 541 GI23987-PA 249..533 442..711 833 55.4 Plus
Dmoj\GI16708-PA 425 GI16708-PA 289..390 458..568 163 39.6 Plus
Dmoj\GI16674-PA 481 GI16674-PA 351..444 458..556 158 37.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22225-PA 726 GL22225-PA 1..726 1..720 2375 70.2 Plus
Dper\GL12292-PA 1975 GL12292-PA 1683..1969 444..714 839 56.4 Plus
Dper\GL16312-PA 426 GL16312-PA 291..383 458..556 159 39.4 Plus
Dper\GL15534-PA 487 GL15534-PA 339..447 443..556 156 34.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27425-PA 727 GA27425-PA 1..727 1..720 2392 70.5 Plus
Dpse\GA16878-PA 487 GA16878-PA 339..447 443..556 157 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26249-PA 722 GM26249-PA 1..722 1..720 3750 97.8 Plus
Dsec\GM13883-PA 418 GM13883-PA 283..394 458..582 160 37.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20789-PA 714 GD20789-PA 1..714 1..720 3693 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10315-PA 737 GJ10315-PA 1..737 1..720 1903 56 Plus
Dvir\GJ23623-PA 542 GJ23623-PA 179..535 381..713 851 48 Plus
Dvir\GJ12450-PA 419 GJ12450-PA 283..375 458..556 162 40.4 Plus
Dvir\GJ12926-PA 494 GJ12926-PA 364..457 458..556 159 37.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13836-PA 729 GK13836-PA 50..729 64..720 2055 65.8 Plus
Dwil\GK12916-PA 555 GK12916-PA 209..549 390..714 892 52.9 Plus
Dwil\GK17294-PA 457 GK17294-PA 281..373 458..556 159 39.4 Plus
Dwil\GK16887-PA 460 GK16887-PA 325..418 458..556 154 37.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24769-PA 728 GE24769-PA 1..728 1..720 3687 95.9 Plus
Dyak\GE20521-PA 441 GE20521-PA 306..398 458..556 157 39.4 Plus