BDGP Sequence Production Resources |
Search the DGRC for RH56418
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 564 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Aats-thr-RB |
Protein status: | RH56418.pep: gold |
Preliminary Size: | 2326 |
Sequenced Size: | 2331 |
Gene | Date | Evidence |
---|---|---|
CG5353 | 2002-10-18 | Blastp of sequenced clone |
CG5353 | 2003-01-01 | Sim4 clustering to Release 3 |
Aats-thr | 2008-04-29 | Release 5.5 accounting |
Aats-thr | 2008-08-15 | Release 5.9 accounting |
Aats-thr | 2008-12-18 | 5.12 accounting |
2331 bp (2331 high quality bases) assembled on 2002-10-18
GenBank Submission: BT001848
> RH56418.complete GACCTGGTAACACTGTGCCCCTTTTTGATAAATTTGTTTCGTAAAAAATG GGCGACAACGTGGTGACGGAACTAAATAACTTGGATTTGAACAATCAAAA GGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCGGCGGTGGAG ATACTCGCAAGGAACTCAGTCCCTTGCCCAAGTACATCGAGGAGCGCAAT GTCTTCTGGGAGAAGTGCAAGGCGGAATACGAGGCCGAACTGGCGGCCAA GAAGCGTGAGCCCATCAAGGTGACACTGCCCGATGGCAAGCAGGTGGACG CCACCTCCTGGGAGACCACTCCGTACGAAGTGGCCCGCGGCATTAGTCAG GGTCTCGCTGACAACACCGTCATCTCCAAGGTGAACGGCGAGGTGTGGGA TTTGGACCGTGTGCTCGAGGGAAACTGCACCCTGCAGCTTCTCAAGTTCG ACGACCCTGAGGCGCAGGCCGTCTTCTGGCACAGCTCTGCCCACATCATG GGTGAGGCCATGGAGCGCATCTATGGTGGACACCTGTGCTACGGTCCGCC CATTGAAAACGGCTTCTACTACGACATGCATCTGGAGGGCGAGGGTATCT CCACCAACGACTACGGCGCCATGGAGGGTCTGGTTAAGCAAATTGTCAAG GAGAAGCAGAACTTCGAACGTCTGGAGATGAAGAAGTCCGACCTGCTGGA GATGTTCAAATACAATGAGTTCAAGGTGCGCATTCTCAACGAGAAGGTGA CCACCGACCGCACCACTGTCTACAAGTGCGGTTCTTTGATCGATCTCTGC CGCGGACCTCATGTTCGTCACACCGGCAAGGTGAAGGCCCTGAAGATCAC CAAGAACTCCTCTACCTACTGGGAGGGTAAGGCTGACGCTGAGACACTGC AACGCGTCTACGGCATCTCGTTCCCCGACCCGAAGCAGCTCAAGGAGTGG GAGAAACTTCAGGAGGAGGCGGCTAAGCGTGATCACCGCAAAATCGGTCG CGAGCAGGAGCTGTTCTTCTTCCATGAACTTTCGCCTGGCTCATGCTTTT TCCAGCCGCGAGGAGCGCACATCTACAACACCCTGATGGGCTTCATCAAG GCGGAATATAGAAAGCGTGGTTTCCAAGAAGTCATTTCCCCCAACATCTA CAACGCTAAGTTGTGGATGACCTCCGGCCACTGGCAGCACTATGCCGAGA ACATGTTCTCCTTCGAGGCCGAGAAGGAGAAGTTCGCCCTCAAGCCCATG AATTGTCCAGGACATTGTCTCATCTTCGATAACCGCAATCGATCCTGGCG AGAGCTGCCACTGCGAATGGCCGACTTCGGTGTGCTTCATCGCAACGAGC TCTCCGGTGCTTTAACCGGATTAACTCGCGTGCGTCGCTTCCAGCAGGAC GATGCGCACATCTTCTGTGCCCCCGAGCAGATTAAAAGCGAAATGAAGGG CTGCCTGGAGTTCCTGAAGTATGTGTATACCATTTTCGGATTCTCCTTCC AGCTGGTGCTGTCCACACGCCCGGATAATTACCTTGGCGAGTTGGAACAG TGGAATGATGCGGAAAAGGCGCTGGCTGAATCACTCAACGAGTTTGGAAT GCCGTGGAAGGAGAACCCCGGCGATGGCGCCTTCTACGGACCGAAGATTG ATATTACCATTATGGATGCACTGAAGCGTGCCCATCAGTGCGCCACCATC CAGTTGGACTTCCAGCTGCCAATTCGTTTTAATCTCAGCTACATCGCCGA CGATGGCGAGAAGAAGAGGCCGGTGATCATCCATCGCGCTATTCTTGGCT CAGTGGAGCGGATGATTGCCATTCTCACGGAGAACTTTGCTGGCAAGTGG CCCTTCTGGCTATCACCGCGCCAGGTGATGGTCGTTCCAGTGGGTCCTGC CTATGATCAGTACGCCCAGTCAGTGCGGGATCAGTTGCACGATGCTGGAT TCATGAGCGAGGCGGATTGCGATGCCGGCGACACGATGAACAAGAAGATA CGCAATGCTCAGTTGGCCCAGTTCAACTTCATTCTGGTGGTGGGCGACAA GGAGCGCTCCTCGAATACCGTTAACGTGCGCACTCGGGACAACAAGGTGC ACGGCGAGGTCTCCGTGGCGGAACTCATCACAAAGCTGCAAAAGATTCGC GACGAATTCATCGCCAACGAGGACAGCTTCTAAGACTCTATTTCGAACTA TTTATCAAAAGTATACTTAACATTTGCATAGCAAAGCAAGTACGCATTTT TGTTCTTTCTATGTATTTACGCTTACGAAACCGGAATTCACAAATAAAAA ACCAAATCCAAACACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aats-thr-RB | 2457 | Aats-thr-RB | 8..2322 | 2..2316 | 11575 | 100 | Plus |
Aats-thr.c | 2457 | Aats-thr.c | 8..2322 | 2..2316 | 11575 | 100 | Plus |
Aats-thr-RA | 2633 | Aats-thr-RA | 283..2498 | 101..2316 | 11080 | 100 | Plus |
Aats-thr-RA | 2633 | Aats-thr-RA | 1..63 | 41..103 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 12103837..12105555 | 597..2315 | 8595 | 100 | Plus |
chr2L | 23010047 | chr2L | 12103348..12103782 | 162..596 | 2175 | 100 | Plus |
chr2L | 23010047 | chr2L | 12102399..12102500 | 2..103 | 510 | 100 | Plus |
chr2L | 23010047 | chr2L | 12103151..12103213 | 100..162 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12105176..12106895 | 597..2316 | 8600 | 100 | Plus |
2L | 23513712 | 2L | 12104687..12105121 | 162..596 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 12103735..12103836 | 2..103 | 510 | 100 | Plus |
2L | 23513712 | 2L | 12104490..12104552 | 100..162 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12105176..12106895 | 597..2316 | 8600 | 100 | Plus |
2L | 23513712 | 2L | 12104687..12105121 | 162..596 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 12103735..12103836 | 2..103 | 510 | 100 | Plus |
2L | 23513712 | 2L | 12104490..12104552 | 100..162 | 315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12102398..12102498 | 1..101 | 99 | -> | Plus |
chr2L | 12103153..12103213 | 102..162 | 100 | -> | Plus |
chr2L | 12103349..12103782 | 163..596 | 100 | -> | Plus |
chr2L | 12103837..12105555 | 597..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RA | 162..2244 | 101..2183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RA | 162..2244 | 101..2183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RA | 162..2244 | 101..2183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RA | 162..2244 | 101..2183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RA | 162..2244 | 101..2183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RB | 2..2315 | 2..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RB | 2..2315 | 2..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RB | 1..2298 | 18..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RB | 2..2319 | 2..2315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-thr-RB | 1..2298 | 18..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12103734..12103834 | 1..101 | 99 | -> | Plus |
2L | 12104492..12104552 | 102..162 | 100 | -> | Plus |
2L | 12104688..12105121 | 163..596 | 100 | -> | Plus |
2L | 12105176..12106894 | 597..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12103734..12103834 | 1..101 | 99 | -> | Plus |
2L | 12104492..12104552 | 102..162 | 100 | -> | Plus |
2L | 12104688..12105121 | 163..596 | 100 | -> | Plus |
2L | 12105176..12106894 | 597..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12103734..12103834 | 1..101 | 99 | -> | Plus |
2L | 12104492..12104552 | 102..162 | 100 | -> | Plus |
2L | 12104688..12105121 | 163..596 | 100 | -> | Plus |
2L | 12105176..12106894 | 597..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 12103734..12103834 | 1..101 | 99 | -> | Plus |
arm_2L | 12104492..12104552 | 102..162 | 100 | -> | Plus |
arm_2L | 12104688..12105121 | 163..596 | 100 | -> | Plus |
arm_2L | 12105176..12106894 | 597..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12104688..12105121 | 163..596 | 100 | -> | Plus |
2L | 12105176..12106894 | 597..2315 | 100 | Plus | |
2L | 12103734..12103834 | 1..101 | 99 | -> | Plus |
2L | 12104492..12104552 | 102..162 | 100 | -> | Plus |
Translation from 47 to 2182
> RH56418.pep MGDNVVTELNNLDLNNQKAAKMKKEKKEKPSGGGDTRKELSPLPKYIEER NVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARGIS QGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHI MGEAMERIYGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIV KEKQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDL CRGPHVRHTGKVKALKITKNSSTYWEGKADAETLQRVYGISFPDPKQLKE WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFI KAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEKFALKP MNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ DDAHIFCAPEQIKSEMKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELE QWNDAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRAHQCAT IQLDFQLPIRFNLSYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDAGDTMNKK IRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELITKLQKI RDEFIANEDSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21565-PA | 749 | GF21565-PA | 57..749 | 19..711 | 3683 | 97.7 | Plus |
Dana\GF10636-PA | 333 | GF10636-PA | 23..299 | 36..298 | 228 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23767-PA | 746 | GG23767-PA | 54..746 | 19..711 | 3750 | 99.4 | Plus |
Dere\GG13700-PA | 333 | GG13700-PA | 23..299 | 36..298 | 238 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11579-PA | 493 | GH11579-PA | 1..493 | 219..711 | 2561 | 94.7 | Plus |
Dgri\GH11578-PA | 245 | GH11578-PA | 54..241 | 19..206 | 878 | 85.1 | Plus |
Dgri\GH14833-PA | 332 | GH14833-PA | 33..294 | 47..294 | 236 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ThrRS-PD | 747 | CG5353-PD | 55..747 | 19..711 | 3691 | 100 | Plus |
ThrRS-PA | 747 | CG5353-PA | 55..747 | 19..711 | 3691 | 100 | Plus |
ThrRS-PC | 690 | CG5353-PC | 1..690 | 22..711 | 3678 | 100 | Plus |
ThrRS-PB | 690 | CG5353-PB | 1..690 | 22..711 | 3678 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17149-PA | 691 | GI17149-PA | 11..691 | 31..711 | 3510 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19239-PA | 754 | GL19239-PA | 72..754 | 30..711 | 3553 | 94.7 | Plus |
Dper\GL25954-PA | 334 | GL25954-PA | 24..295 | 36..293 | 239 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18821-PB | 754 | GA18821-PB | 72..754 | 30..711 | 3553 | 94.7 | Plus |
Dpse\GA14359-PA | 334 | GA14359-PA | 24..295 | 36..293 | 239 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26732-PA | 747 | GM26732-PA | 55..747 | 19..711 | 3762 | 99.6 | Plus |
Dsec\GM24519-PA | 333 | GM24519-PA | 23..299 | 36..298 | 232 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23818-PA | 747 | GD23818-PA | 55..747 | 19..711 | 3763 | 99.6 | Plus |
Dsim\GD12590-PA | 333 | GD12590-PA | 23..299 | 36..298 | 232 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17652-PA | 745 | GJ17652-PA | 66..745 | 32..711 | 3518 | 94.6 | Plus |
Dvir\GJ13727-PA | 332 | GJ13727-PA | 64..293 | 77..293 | 217 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21088-PA | 699 | GK21088-PA | 2..699 | 12..711 | 3520 | 92.6 | Plus |
Translation from 47 to 2182
> RH56418.hyp MGDNVVTELNNLDLNNQKAAKMKKEKKEKPSGGGDTRKELSPLPKYIEER NVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARGIS QGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHI MGEAMERIYGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIV KEKQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDL CRGPHVRHTGKVKALKITKNSSTYWEGKADAETLQRVYGISFPDPKQLKE WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFI KAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEKFALKP MNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ DDAHIFCAPEQIKSEMKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELE QWNDAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRAHQCAT IQLDFQLPIRFNLSYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDAGDTMNKK IRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELITKLQKI RDEFIANEDSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aats-thr-PD | 747 | CG5353-PD | 55..747 | 19..711 | 3691 | 100 | Plus |
Aats-thr-PA | 747 | CG5353-PA | 55..747 | 19..711 | 3691 | 100 | Plus |
Aats-thr-PC | 690 | CG5353-PC | 1..690 | 22..711 | 3678 | 100 | Plus |
Aats-thr-PB | 690 | CG5353-PB | 1..690 | 22..711 | 3678 | 100 | Plus |