Clone RH56418 Report

Search the DGRC for RH56418

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:564
Well:18
Vector:pFlc-1
Associated Gene/TranscriptAats-thr-RB
Protein status:RH56418.pep: gold
Preliminary Size:2326
Sequenced Size:2331

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5353 2002-10-18 Blastp of sequenced clone
CG5353 2003-01-01 Sim4 clustering to Release 3
Aats-thr 2008-04-29 Release 5.5 accounting
Aats-thr 2008-08-15 Release 5.9 accounting
Aats-thr 2008-12-18 5.12 accounting

Clone Sequence Records

RH56418.complete Sequence

2331 bp (2331 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001848

> RH56418.complete
GACCTGGTAACACTGTGCCCCTTTTTGATAAATTTGTTTCGTAAAAAATG
GGCGACAACGTGGTGACGGAACTAAATAACTTGGATTTGAACAATCAAAA
GGCTGCCAAGATGAAGAAGGAGAAAAAGGAGAAGCCATCCGGCGGTGGAG
ATACTCGCAAGGAACTCAGTCCCTTGCCCAAGTACATCGAGGAGCGCAAT
GTCTTCTGGGAGAAGTGCAAGGCGGAATACGAGGCCGAACTGGCGGCCAA
GAAGCGTGAGCCCATCAAGGTGACACTGCCCGATGGCAAGCAGGTGGACG
CCACCTCCTGGGAGACCACTCCGTACGAAGTGGCCCGCGGCATTAGTCAG
GGTCTCGCTGACAACACCGTCATCTCCAAGGTGAACGGCGAGGTGTGGGA
TTTGGACCGTGTGCTCGAGGGAAACTGCACCCTGCAGCTTCTCAAGTTCG
ACGACCCTGAGGCGCAGGCCGTCTTCTGGCACAGCTCTGCCCACATCATG
GGTGAGGCCATGGAGCGCATCTATGGTGGACACCTGTGCTACGGTCCGCC
CATTGAAAACGGCTTCTACTACGACATGCATCTGGAGGGCGAGGGTATCT
CCACCAACGACTACGGCGCCATGGAGGGTCTGGTTAAGCAAATTGTCAAG
GAGAAGCAGAACTTCGAACGTCTGGAGATGAAGAAGTCCGACCTGCTGGA
GATGTTCAAATACAATGAGTTCAAGGTGCGCATTCTCAACGAGAAGGTGA
CCACCGACCGCACCACTGTCTACAAGTGCGGTTCTTTGATCGATCTCTGC
CGCGGACCTCATGTTCGTCACACCGGCAAGGTGAAGGCCCTGAAGATCAC
CAAGAACTCCTCTACCTACTGGGAGGGTAAGGCTGACGCTGAGACACTGC
AACGCGTCTACGGCATCTCGTTCCCCGACCCGAAGCAGCTCAAGGAGTGG
GAGAAACTTCAGGAGGAGGCGGCTAAGCGTGATCACCGCAAAATCGGTCG
CGAGCAGGAGCTGTTCTTCTTCCATGAACTTTCGCCTGGCTCATGCTTTT
TCCAGCCGCGAGGAGCGCACATCTACAACACCCTGATGGGCTTCATCAAG
GCGGAATATAGAAAGCGTGGTTTCCAAGAAGTCATTTCCCCCAACATCTA
CAACGCTAAGTTGTGGATGACCTCCGGCCACTGGCAGCACTATGCCGAGA
ACATGTTCTCCTTCGAGGCCGAGAAGGAGAAGTTCGCCCTCAAGCCCATG
AATTGTCCAGGACATTGTCTCATCTTCGATAACCGCAATCGATCCTGGCG
AGAGCTGCCACTGCGAATGGCCGACTTCGGTGTGCTTCATCGCAACGAGC
TCTCCGGTGCTTTAACCGGATTAACTCGCGTGCGTCGCTTCCAGCAGGAC
GATGCGCACATCTTCTGTGCCCCCGAGCAGATTAAAAGCGAAATGAAGGG
CTGCCTGGAGTTCCTGAAGTATGTGTATACCATTTTCGGATTCTCCTTCC
AGCTGGTGCTGTCCACACGCCCGGATAATTACCTTGGCGAGTTGGAACAG
TGGAATGATGCGGAAAAGGCGCTGGCTGAATCACTCAACGAGTTTGGAAT
GCCGTGGAAGGAGAACCCCGGCGATGGCGCCTTCTACGGACCGAAGATTG
ATATTACCATTATGGATGCACTGAAGCGTGCCCATCAGTGCGCCACCATC
CAGTTGGACTTCCAGCTGCCAATTCGTTTTAATCTCAGCTACATCGCCGA
CGATGGCGAGAAGAAGAGGCCGGTGATCATCCATCGCGCTATTCTTGGCT
CAGTGGAGCGGATGATTGCCATTCTCACGGAGAACTTTGCTGGCAAGTGG
CCCTTCTGGCTATCACCGCGCCAGGTGATGGTCGTTCCAGTGGGTCCTGC
CTATGATCAGTACGCCCAGTCAGTGCGGGATCAGTTGCACGATGCTGGAT
TCATGAGCGAGGCGGATTGCGATGCCGGCGACACGATGAACAAGAAGATA
CGCAATGCTCAGTTGGCCCAGTTCAACTTCATTCTGGTGGTGGGCGACAA
GGAGCGCTCCTCGAATACCGTTAACGTGCGCACTCGGGACAACAAGGTGC
ACGGCGAGGTCTCCGTGGCGGAACTCATCACAAAGCTGCAAAAGATTCGC
GACGAATTCATCGCCAACGAGGACAGCTTCTAAGACTCTATTTCGAACTA
TTTATCAAAAGTATACTTAACATTTGCATAGCAAAGCAAGTACGCATTTT
TGTTCTTTCTATGTATTTACGCTTACGAAACCGGAATTCACAAATAAAAA
ACCAAATCCAAACACAAAAAAAAAAAAAAAA

RH56418.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-thr-RB 2457 Aats-thr-RB 8..2322 2..2316 11575 100 Plus
Aats-thr.c 2457 Aats-thr.c 8..2322 2..2316 11575 100 Plus
Aats-thr-RA 2633 Aats-thr-RA 283..2498 101..2316 11080 100 Plus
Aats-thr-RA 2633 Aats-thr-RA 1..63 41..103 315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12103837..12105555 597..2315 8595 100 Plus
chr2L 23010047 chr2L 12103348..12103782 162..596 2175 100 Plus
chr2L 23010047 chr2L 12102399..12102500 2..103 510 100 Plus
chr2L 23010047 chr2L 12103151..12103213 100..162 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12105176..12106895 597..2316 8600 100 Plus
2L 23513712 2L 12104687..12105121 162..596 2175 100 Plus
2L 23513712 2L 12103735..12103836 2..103 510 100 Plus
2L 23513712 2L 12104490..12104552 100..162 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12105176..12106895 597..2316 8600 100 Plus
2L 23513712 2L 12104687..12105121 162..596 2175 100 Plus
2L 23513712 2L 12103735..12103836 2..103 510 100 Plus
2L 23513712 2L 12104490..12104552 100..162 315 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:19:29 has no hits.

RH56418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:36 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12102398..12102498 1..101 99 -> Plus
chr2L 12103153..12103213 102..162 100 -> Plus
chr2L 12103349..12103782 163..596 100 -> Plus
chr2L 12103837..12105555 597..2315 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:10 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RA 162..2244 101..2183 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:46 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RA 162..2244 101..2183 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:27 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RA 162..2244 101..2183 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:40 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RA 162..2244 101..2183 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:51 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RA 162..2244 101..2183 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:46 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RB 2..2315 2..2315 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:46 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RB 2..2315 2..2315 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:27 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RB 1..2298 18..2315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:40 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RB 2..2319 2..2315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:51 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-thr-RB 1..2298 18..2315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:36 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12103734..12103834 1..101 99 -> Plus
2L 12104492..12104552 102..162 100 -> Plus
2L 12104688..12105121 163..596 100 -> Plus
2L 12105176..12106894 597..2315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:36 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12103734..12103834 1..101 99 -> Plus
2L 12104492..12104552 102..162 100 -> Plus
2L 12104688..12105121 163..596 100 -> Plus
2L 12105176..12106894 597..2315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:36 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12103734..12103834 1..101 99 -> Plus
2L 12104492..12104552 102..162 100 -> Plus
2L 12104688..12105121 163..596 100 -> Plus
2L 12105176..12106894 597..2315 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:27 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12103734..12103834 1..101 99 -> Plus
arm_2L 12104492..12104552 102..162 100 -> Plus
arm_2L 12104688..12105121 163..596 100 -> Plus
arm_2L 12105176..12106894 597..2315 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:12 Download gff for RH56418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12104688..12105121 163..596 100 -> Plus
2L 12105176..12106894 597..2315 100   Plus
2L 12103734..12103834 1..101 99 -> Plus
2L 12104492..12104552 102..162 100 -> Plus

RH56418.pep Sequence

Translation from 47 to 2182

> RH56418.pep
MGDNVVTELNNLDLNNQKAAKMKKEKKEKPSGGGDTRKELSPLPKYIEER
NVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARGIS
QGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHI
MGEAMERIYGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIV
KEKQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDL
CRGPHVRHTGKVKALKITKNSSTYWEGKADAETLQRVYGISFPDPKQLKE
WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFI
KAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEKFALKP
MNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ
DDAHIFCAPEQIKSEMKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELE
QWNDAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRAHQCAT
IQLDFQLPIRFNLSYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK
WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDAGDTMNKK
IRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELITKLQKI
RDEFIANEDSF*

RH56418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21565-PA 749 GF21565-PA 57..749 19..711 3683 97.7 Plus
Dana\GF10636-PA 333 GF10636-PA 23..299 36..298 228 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23767-PA 746 GG23767-PA 54..746 19..711 3750 99.4 Plus
Dere\GG13700-PA 333 GG13700-PA 23..299 36..298 238 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11579-PA 493 GH11579-PA 1..493 219..711 2561 94.7 Plus
Dgri\GH11578-PA 245 GH11578-PA 54..241 19..206 878 85.1 Plus
Dgri\GH14833-PA 332 GH14833-PA 33..294 47..294 236 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
ThrRS-PD 747 CG5353-PD 55..747 19..711 3691 100 Plus
ThrRS-PA 747 CG5353-PA 55..747 19..711 3691 100 Plus
ThrRS-PC 690 CG5353-PC 1..690 22..711 3678 100 Plus
ThrRS-PB 690 CG5353-PB 1..690 22..711 3678 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17149-PA 691 GI17149-PA 11..691 31..711 3510 93.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19239-PA 754 GL19239-PA 72..754 30..711 3553 94.7 Plus
Dper\GL25954-PA 334 GL25954-PA 24..295 36..293 239 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18821-PB 754 GA18821-PB 72..754 30..711 3553 94.7 Plus
Dpse\GA14359-PA 334 GA14359-PA 24..295 36..293 239 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26732-PA 747 GM26732-PA 55..747 19..711 3762 99.6 Plus
Dsec\GM24519-PA 333 GM24519-PA 23..299 36..298 232 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23818-PA 747 GD23818-PA 55..747 19..711 3763 99.6 Plus
Dsim\GD12590-PA 333 GD12590-PA 23..299 36..298 232 26.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17652-PA 745 GJ17652-PA 66..745 32..711 3518 94.6 Plus
Dvir\GJ13727-PA 332 GJ13727-PA 64..293 77..293 217 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21088-PA 699 GK21088-PA 2..699 12..711 3520 92.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Aats-thr-PA 747 GE18572-PA 55..747 19..711 3691 97.8 Plus
Dyak\GE19994-PA 333 GE19994-PA 23..299 36..298 240 28 Plus

RH56418.hyp Sequence

Translation from 47 to 2182

> RH56418.hyp
MGDNVVTELNNLDLNNQKAAKMKKEKKEKPSGGGDTRKELSPLPKYIEER
NVFWEKCKAEYEAELAAKKREPIKVTLPDGKQVDATSWETTPYEVARGIS
QGLADNTVISKVNGEVWDLDRVLEGNCTLQLLKFDDPEAQAVFWHSSAHI
MGEAMERIYGGHLCYGPPIENGFYYDMHLEGEGISTNDYGAMEGLVKQIV
KEKQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDL
CRGPHVRHTGKVKALKITKNSSTYWEGKADAETLQRVYGISFPDPKQLKE
WEKLQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLMGFI
KAEYRKRGFQEVISPNIYNAKLWMTSGHWQHYAENMFSFEAEKEKFALKP
MNCPGHCLIFDNRNRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQ
DDAHIFCAPEQIKSEMKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELE
QWNDAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRAHQCAT
IQLDFQLPIRFNLSYIADDGEKKRPVIIHRAILGSVERMIAILTENFAGK
WPFWLSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEADCDAGDTMNKK
IRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGEVSVAELITKLQKI
RDEFIANEDSF*

RH56418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-thr-PD 747 CG5353-PD 55..747 19..711 3691 100 Plus
Aats-thr-PA 747 CG5353-PA 55..747 19..711 3691 100 Plus
Aats-thr-PC 690 CG5353-PC 1..690 22..711 3678 100 Plus
Aats-thr-PB 690 CG5353-PB 1..690 22..711 3678 100 Plus