BDGP Sequence Production Resources |
Search the DGRC for RH56553
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 565 |
Well: | 53 |
Vector: | pFlc-1 |
Associated Gene/Transcript | tko-RB |
Protein status: | RH56553.pep: gold |
Preliminary Size: | 1383 |
Sequenced Size: | 680 |
Gene | Date | Evidence |
---|---|---|
CG7925 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7925 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7925 | 2004-08-13 | Blastp of sequenced clone |
tko | 2008-04-29 | Release 5.5 accounting |
tko | 2008-08-15 | Release 5.9 accounting |
tko | 2008-12-18 | 5.12 accounting |
680 bp (680 high quality bases) assembled on 2004-08-13
GenBank Submission: BT015958
> RH56553.complete GACCTGTGCCAGCTCTAGGACAGCAACAGCTGATTGTCACATTAGAATTG AATTGGAATTAGATTATTAAATATTTTAGCGCTTTTATAACACAAAAGGC CGACTAAATAGCTTCCGAGCAAGCGCCACCAATCCGAGCGACGGCTGGTA CTACAAACTGAACAAAAAACTACTGAACAAAACTCCAAGAGCATGAATTT TCTGCGGCAATCCTTTGGCATTACGAAACAGTTGGCTTCGCAGGCCATCC AGTGCAGCTATGAGACCGCCGTCCGTGGAATGGCATCGCTGCAGCAGATG CACCGCAGCGGACCGCACATAAAGACGCGTCCGCCGCGCCAGCCGCTGGA TGGAAAGCCCTTCGCCAAGGGCGTTGTCCTGAAGACGCTGATAAAGAAGC CCAAGAAGCCGAACTCGGCCAATCGAAAGTGCGTGCTGGTGCGCCTCTCC ACCGGCAAGGAGATGGTGGCCTACATCCCCGGCATCGGGCACAACCTGCA AGAGCACAACATTGTACTGTGCCGCGTGGGGCGTCTGCAGGACGTGCCCG GCGTTAAGCTGAAGGCTGTGCGCGGAGTCTACGACTTGGCGCACGTCGTC AAGAAGAGCCAATAGTTAATAACCACTTCCTAATCACGTTGTTCAAATGC ATTGCTTCACAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tko-RB | 913 | tko-RB | 7..671 | 2..666 | 3310 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2336201..2336620 | 245..664 | 99 | <- | Minus |
chrX | 2337624..2337866 | 1..244 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..423 | 193..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..423 | 193..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..423 | 193..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..423 | 193..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..423 | 193..615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..663 | 2..664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..663 | 2..664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..663 | 2..664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..663 | 2..664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tko-RB | 1..663 | 2..664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2443734..2443976 | 1..244 | 99 | Minus | |
X | 2442313..2442732 | 245..664 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2443734..2443976 | 1..244 | 99 | Minus | |
X | 2442313..2442732 | 245..664 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2443734..2443976 | 1..244 | 99 | Minus | |
X | 2442313..2442732 | 245..664 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2336346..2336765 | 245..664 | 99 | <- | Minus |
arm_X | 2337767..2338009 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2450411..2450830 | 245..664 | 99 | <- | Minus |
X | 2451832..2452074 | 1..244 | 99 | Minus |
Translation from 192 to 614
> RH56553.hyp MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tko-PB | 140 | CG7925-PB | 1..140 | 1..140 | 722 | 100 | Plus |
tko-PC | 154 | CG7925-PC | 32..154 | 18..140 | 639 | 100 | Plus |
RpS23-PA | 143 | CG8415-PA | 31..124 | 42..127 | 138 | 39.4 | Plus |
RpS23-PB | 143 | CG8415-PB | 31..124 | 42..127 | 138 | 39.4 | Plus |
Translation from 192 to 614
> RH56553.pep MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21950-PA | 140 | GF21950-PA | 1..140 | 1..140 | 691 | 92.1 | Plus |
Dana\GF12897-PA | 143 | GF12897-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12613-PA | 140 | GG12613-PA | 1..140 | 1..140 | 722 | 97.1 | Plus |
Dere\GG22436-PA | 143 | GG22436-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17581-PA | 143 | GH17581-PA | 1..143 | 1..140 | 668 | 88.1 | Plus |
Dgri\GH20043-PA | 143 | GH20043-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tko-PB | 140 | CG7925-PB | 1..140 | 1..140 | 722 | 100 | Plus |
tko-PC | 154 | CG7925-PC | 32..154 | 18..140 | 639 | 100 | Plus |
RpS23-PA | 143 | CG8415-PA | 31..124 | 42..127 | 138 | 39.4 | Plus |
RpS23-PB | 143 | CG8415-PB | 31..124 | 42..127 | 138 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15180-PA | 141 | GI15180-PA | 1..141 | 1..140 | 666 | 88.7 | Plus |
Dmoj\GI20452-PA | 143 | GI20452-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14306-PA | 140 | GL14306-PA | 1..139 | 1..139 | 675 | 90.6 | Plus |
Dper\GL17287-PA | 143 | GL17287-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20693-PA | 140 | GA20693-PA | 1..140 | 1..140 | 680 | 90.7 | Plus |
Dpse\GA21060-PA | 143 | GA21060-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18879-PA | 140 | GM18879-PA | 1..140 | 1..140 | 733 | 99.3 | Plus |
Dsec\GM20223-PA | 143 | GM20223-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16364-PA | 140 | GD16364-PA | 1..140 | 1..140 | 733 | 99.3 | Plus |
Dsim\GD25696-PA | 143 | GD25696-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17060-PA | 141 | GJ17060-PA | 1..141 | 1..140 | 648 | 87.2 | Plus |
Dvir\GJ22302-PA | 143 | GJ22302-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17857-PA | 111 | GK17857-PA | 1..111 | 30..140 | 561 | 96.4 | Plus |
Dwil\GK12483-PA | 126 | GK12483-PA | 3..114 | 30..140 | 247 | 48.2 | Plus |
Dwil\GK21747-PA | 143 | GK21747-PA | 31..124 | 42..127 | 137 | 39.4 | Plus |