Clone RH56553 Report

Search the DGRC for RH56553

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:565
Well:53
Vector:pFlc-1
Associated Gene/Transcripttko-RB
Protein status:RH56553.pep: gold
Preliminary Size:1383
Sequenced Size:680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7925 2002-01-01 Sim4 clustering to Release 2
CG7925 2003-01-01 Sim4 clustering to Release 3
CG7925 2004-08-13 Blastp of sequenced clone
tko 2008-04-29 Release 5.5 accounting
tko 2008-08-15 Release 5.9 accounting
tko 2008-12-18 5.12 accounting

Clone Sequence Records

RH56553.complete Sequence

680 bp (680 high quality bases) assembled on 2004-08-13

GenBank Submission: BT015958

> RH56553.complete
GACCTGTGCCAGCTCTAGGACAGCAACAGCTGATTGTCACATTAGAATTG
AATTGGAATTAGATTATTAAATATTTTAGCGCTTTTATAACACAAAAGGC
CGACTAAATAGCTTCCGAGCAAGCGCCACCAATCCGAGCGACGGCTGGTA
CTACAAACTGAACAAAAAACTACTGAACAAAACTCCAAGAGCATGAATTT
TCTGCGGCAATCCTTTGGCATTACGAAACAGTTGGCTTCGCAGGCCATCC
AGTGCAGCTATGAGACCGCCGTCCGTGGAATGGCATCGCTGCAGCAGATG
CACCGCAGCGGACCGCACATAAAGACGCGTCCGCCGCGCCAGCCGCTGGA
TGGAAAGCCCTTCGCCAAGGGCGTTGTCCTGAAGACGCTGATAAAGAAGC
CCAAGAAGCCGAACTCGGCCAATCGAAAGTGCGTGCTGGTGCGCCTCTCC
ACCGGCAAGGAGATGGTGGCCTACATCCCCGGCATCGGGCACAACCTGCA
AGAGCACAACATTGTACTGTGCCGCGTGGGGCGTCTGCAGGACGTGCCCG
GCGTTAAGCTGAAGGCTGTGCGCGGAGTCTACGACTTGGCGCACGTCGTC
AAGAAGAGCCAATAGTTAATAACCACTTCCTAATCACGTTGTTCAAATGC
ATTGCTTCACAACCAAAAAAAAAAAAAAAA

RH56553.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
tko-RB 913 tko-RB 7..671 2..666 3310 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2336203..2336621 662..244 2050 99.3 Minus
chrX 22417052 chrX 2337624..2337866 244..2 1185 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2442311..2442733 666..244 2100 99.8 Minus
X 23542271 X 2443734..2443976 244..2 1215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2450409..2450831 666..244 2100 99.7 Minus
X 23527363 X 2451832..2452074 244..2 1215 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:46:58 has no hits.

RH56553.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:48:12 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2336201..2336620 245..664 99 <- Minus
chrX 2337624..2337866 1..244 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:12 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..423 193..615 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:49 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..423 193..615 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:09:45 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..423 193..615 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:41 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..423 193..615 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:54 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..423 193..615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:38:13 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..663 2..664 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:49 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..663 2..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:45 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..663 2..664 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:41 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..663 2..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:54 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
tko-RB 1..663 2..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:48:12 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
X 2443734..2443976 1..244 99   Minus
X 2442313..2442732 245..664 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:48:12 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
X 2443734..2443976 1..244 99   Minus
X 2442313..2442732 245..664 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:48:12 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
X 2443734..2443976 1..244 99   Minus
X 2442313..2442732 245..664 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:45 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2336346..2336765 245..664 99 <- Minus
arm_X 2337767..2338009 1..244 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:39 Download gff for RH56553.complete
Subject Subject Range Query Range Percent Splice Strand
X 2450411..2450830 245..664 99 <- Minus
X 2451832..2452074 1..244 99   Minus

RH56553.hyp Sequence

Translation from 192 to 614

> RH56553.hyp
MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ
PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH
NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ*

RH56553.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
tko-PB 140 CG7925-PB 1..140 1..140 722 100 Plus
tko-PC 154 CG7925-PC 32..154 18..140 639 100 Plus
RpS23-PA 143 CG8415-PA 31..124 42..127 138 39.4 Plus
RpS23-PB 143 CG8415-PB 31..124 42..127 138 39.4 Plus

RH56553.pep Sequence

Translation from 192 to 614

> RH56553.pep
MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ
PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH
NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ*

RH56553.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21950-PA 140 GF21950-PA 1..140 1..140 691 92.1 Plus
Dana\GF12897-PA 143 GF12897-PA 31..124 42..127 137 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12613-PA 140 GG12613-PA 1..140 1..140 722 97.1 Plus
Dere\GG22436-PA 143 GG22436-PA 31..124 42..127 137 39.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17581-PA 143 GH17581-PA 1..143 1..140 668 88.1 Plus
Dgri\GH20043-PA 143 GH20043-PA 31..124 42..127 137 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
tko-PB 140 CG7925-PB 1..140 1..140 722 100 Plus
tko-PC 154 CG7925-PC 32..154 18..140 639 100 Plus
RpS23-PA 143 CG8415-PA 31..124 42..127 138 39.4 Plus
RpS23-PB 143 CG8415-PB 31..124 42..127 138 39.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15180-PA 141 GI15180-PA 1..141 1..140 666 88.7 Plus
Dmoj\GI20452-PA 143 GI20452-PA 31..124 42..127 137 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14306-PA 140 GL14306-PA 1..139 1..139 675 90.6 Plus
Dper\GL17287-PA 143 GL17287-PA 31..124 42..127 137 39.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20693-PA 140 GA20693-PA 1..140 1..140 680 90.7 Plus
Dpse\GA21060-PA 143 GA21060-PA 31..124 42..127 137 39.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18879-PA 140 GM18879-PA 1..140 1..140 733 99.3 Plus
Dsec\GM20223-PA 143 GM20223-PA 31..124 42..127 137 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16364-PA 140 GD16364-PA 1..140 1..140 733 99.3 Plus
Dsim\GD25696-PA 143 GD25696-PA 31..124 42..127 137 39.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17060-PA 141 GJ17060-PA 1..141 1..140 648 87.2 Plus
Dvir\GJ22302-PA 143 GJ22302-PA 31..124 42..127 137 39.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17857-PA 111 GK17857-PA 1..111 30..140 561 96.4 Plus
Dwil\GK12483-PA 126 GK12483-PA 3..114 30..140 247 48.2 Plus
Dwil\GK21747-PA 143 GK21747-PA 31..124 42..127 137 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16944-PA 140 GE16944-PA 1..140 1..140 719 97.1 Plus
Dyak\GE12328-PA 143 GE12328-PA 31..124 42..127 137 39.4 Plus