BDGP Sequence Production Resources |
Search the DGRC for RH57020
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 570 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dh31-RA |
Protein status: | RH57020.pep: gold |
Sequenced Size: | 1309 |
Gene | Date | Evidence |
---|---|---|
CG13094 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13094 | 2004-03-31 | Blastp of sequenced clone |
Dh31 | 2008-04-29 | Release 5.5 accounting |
Dh31 | 2008-08-15 | Release 5.9 accounting |
Dh31 | 2008-12-18 | 5.12 accounting |
1309 bp (1309 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012436
> RH57020.complete GACTTGCGTTTCAGTCTCAAAGCGGTGCAGTCAGCAGCAGTAACGGTTAA TATATGGAATCGATCTAAACCAATCGAACTTTGATCGCAAATAAAGCGAA AGTGTTGTGTGCATTTGTGAAAAAGGGAGACAGCCGCACAAAGATGACAA ACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTCTTCTGCCTCTTGGCC ATCTCGAGCATCGAGGCAGCTCCGATGCCCAGCCAATCCAATGGAGGATA CGGTGGCGCTGGCTATAACGAACTGGAGGAGGTGCCCGACGACCTACTCA TGGAACTGATGACTCGCTTTGGACGCACCATCATACGGGCTCGAAACGAT CTGGAGAATTCCAAACGAACCGTGGACTTTGGCTTGGCCCGGGGATATTC GGGTACCCAGGAGGCGAAACATCGCATGGGTCTGGCTGCAGCCAACTTTG CCGGAGGACCCGGTCGGAGGCGACGATCCGAGACCGATGTCTAAGGCGTC TGGATGAGACCGGGCTGCGAATCCTGTGAACGTTGAGGACGAACGTCAAC TTTTTCCACCTAAACTTGGCCCATACTTTGATACTTTCCTAGATCTTTCA TTTGCATTACGTTTAATTGTTTGTTATTCATTGTACATAAATATTTATTA CGGAAATGTCCTCATGCAATTCATCAAAATTTTTTTTCCCTTCAAGAGTT ATACGAAAATAATATTCAACAGATATCGAAATTATATATACCAAAGGCGA ATAAAAGCGTTAAACTGTTGCTCCGAAAGAAAAAATGTTGAAAACAATTT ATGCAAATTTTCATCCCAGATTTAACTCAGTGCTAATTGCTCGTTTTAAC CCGAAAATATGGAAGAAAGGTAAAGAGAGAAGGGAGAAATTTAAATAAAT ATATCCTAAATATATATTCAAGTGTAAGCATAATCGCGCAAAAAATCTTT AACTAGGTATGTCTTACATAAACTAACAAAAATTTAAAAAAAAAGATCTA CACAAATATACATACTTATATGCTAACAACACACTTTTGGCCCCCAAAAT GAAGCCAACAAAAACAAAAAAACCCCAACGAAACTGAAAGTTTATTTTAT CAATAGCCAACTTGGTCTCACGCGACTTTTAAGTATTGTAAATATAAATT ATTAAAGCACACGTACAACTAATGCGATACAAATATATTACGGAATTCTA CTTGCATATATATTTAATAATTATTGTGTCTATGCTGCAAACATATATCT TAACGTGAGTCGGACACGATCAAATAAAAGTCTACATTTTGAGAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dh31-RA | 1295 | Dh31-RA | 4..1295 | 2..1293 | 6445 | 99.9 | Plus |
Dh31-RC | 1311 | Dh31-RC | 17..1311 | 2..1293 | 6390 | 99.6 | Plus |
Dh31.a | 799 | Dh31.a | 1..357 | 2..358 | 1770 | 99.7 | Plus |
Dh31.a | 799 | Dh31.a | 522..799 | 359..636 | 1390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8490785..8491719 | 1293..359 | 4675 | 100 | Minus |
chr2L | 23010047 | chr2L | 8491884..8492011 | 358..231 | 640 | 100 | Minus |
chr2L | 23010047 | chr2L | 8492664..8492770 | 232..126 | 520 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 8505542..8505614 | 127..55 | 365 | 100 | Minus |
chr2L | 23010047 | chr2L | 8505702..8505753 | 53..2 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8491866..8492802 | 1295..359 | 4685 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493094 | 358..231 | 640 | 100 | Minus |
2L | 23513712 | 2L | 8493747..8493853 | 232..126 | 535 | 100 | Minus |
2L | 23513712 | 2L | 8506634..8506706 | 127..55 | 365 | 100 | Minus |
2L | 23513712 | 2L | 8506794..8506845 | 53..2 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8491866..8492802 | 1295..359 | 4685 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493094 | 358..231 | 640 | 100 | Minus |
2L | 23513712 | 2L | 8493747..8493853 | 232..126 | 535 | 100 | Minus |
2L | 23513712 | 2L | 8506634..8506706 | 127..55 | 365 | 100 | Minus |
2L | 23513712 | 2L | 8506794..8506845 | 53..2 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 726..966 | 1134..901 | 128 | 55.1 | Minus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 709..848 | 885..1032 | 127 | 60.3 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 7343..7411 | 966..1036 | 115 | 69.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8490785..8491719 | 359..1293 | 100 | <- | Minus |
chr2L | 8491884..8492009 | 233..358 | 100 | <- | Minus |
chr2L | 8492664..8492769 | 127..232 | 99 | <- | Minus |
chr2L | 8505543..8505614 | 55..126 | 100 | <- | Minus |
chr2L | 8505701..8505753 | 1..54 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..351 | 144..494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..351 | 144..494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..351 | 144..494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..351 | 144..494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..351 | 144..494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..1292 | 2..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..1292 | 2..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..1292 | 2..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..981 | 2..982 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RA | 1..1292 | 2..1293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 359..1293 | 100 | <- | Minus |
2L | 8492967..8493092 | 233..358 | 100 | <- | Minus |
2L | 8493747..8493852 | 127..232 | 100 | <- | Minus |
2L | 8506635..8506706 | 55..126 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..54 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 359..1293 | 100 | <- | Minus |
2L | 8492967..8493092 | 233..358 | 100 | <- | Minus |
2L | 8493747..8493852 | 127..232 | 100 | <- | Minus |
2L | 8506635..8506706 | 55..126 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..54 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 359..1293 | 100 | <- | Minus |
2L | 8492967..8493092 | 233..358 | 100 | <- | Minus |
2L | 8493747..8493852 | 127..232 | 100 | <- | Minus |
2L | 8506635..8506706 | 55..126 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..54 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8506635..8506706 | 55..126 | 100 | <- | Minus |
arm_2L | 8506793..8506845 | 1..54 | 96 | Minus | |
arm_2L | 8491868..8492802 | 359..1293 | 100 | <- | Minus |
arm_2L | 8492967..8493092 | 233..358 | 100 | <- | Minus |
arm_2L | 8493747..8493852 | 127..232 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 359..1293 | 100 | <- | Minus |
2L | 8492967..8493092 | 233..358 | 100 | <- | Minus |
2L | 8493747..8493852 | 127..232 | 100 | <- | Minus |
2L | 8506635..8506706 | 55..126 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..54 | 96 | Minus |
Translation from 143 to 493
> RH57020.hyp MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA NFAGGPGRRRRSETDV*
Translation from 143 to 493
> RH57020.pep MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA NFAGGPGRRRRSETDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14370-PA | 116 | GF14370-PA | 1..116 | 1..116 | 453 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24068-PA | 116 | GG24068-PA | 1..116 | 1..116 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10771-PA | 115 | GH10771-PA | 1..115 | 1..116 | 446 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dh31-PA | 116 | CG13094-PA | 1..116 | 1..116 | 599 | 100 | Plus |
Dh31-PC | 117 | CG13094-PC | 1..117 | 1..116 | 582 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17634-PA | 116 | GI17634-PA | 2..116 | 1..116 | 504 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25648-PA | 119 | GL25648-PA | 1..119 | 1..116 | 506 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12042-PA | 119 | GA12042-PA | 1..119 | 1..116 | 506 | 89.1 | Plus |
Dpse\GA22214-PA | 119 | GA22214-PA | 1..119 | 1..116 | 504 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12880-PA | 116 | GM12880-PA | 1..116 | 1..116 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22397-PA | 116 | GD22397-PA | 1..116 | 1..116 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18199-PA | 115 | GJ18199-PA | 1..115 | 1..116 | 491 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24837-PA | 120 | GK24837-PA | 1..120 | 1..116 | 490 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10938-PA | 116 | GE10938-PA | 1..116 | 1..116 | 605 | 100 | Plus |