Clone RH57020 Report

Search the DGRC for RH57020

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:570
Well:20
Vector:pFlc-1
Associated Gene/TranscriptDh31-RA
Protein status:RH57020.pep: gold
Sequenced Size:1309

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13094 2003-01-01 Sim4 clustering to Release 3
CG13094 2004-03-31 Blastp of sequenced clone
Dh31 2008-04-29 Release 5.5 accounting
Dh31 2008-08-15 Release 5.9 accounting
Dh31 2008-12-18 5.12 accounting

Clone Sequence Records

RH57020.complete Sequence

1309 bp (1309 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012436

> RH57020.complete
GACTTGCGTTTCAGTCTCAAAGCGGTGCAGTCAGCAGCAGTAACGGTTAA
TATATGGAATCGATCTAAACCAATCGAACTTTGATCGCAAATAAAGCGAA
AGTGTTGTGTGCATTTGTGAAAAAGGGAGACAGCCGCACAAAGATGACAA
ACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTCTTCTGCCTCTTGGCC
ATCTCGAGCATCGAGGCAGCTCCGATGCCCAGCCAATCCAATGGAGGATA
CGGTGGCGCTGGCTATAACGAACTGGAGGAGGTGCCCGACGACCTACTCA
TGGAACTGATGACTCGCTTTGGACGCACCATCATACGGGCTCGAAACGAT
CTGGAGAATTCCAAACGAACCGTGGACTTTGGCTTGGCCCGGGGATATTC
GGGTACCCAGGAGGCGAAACATCGCATGGGTCTGGCTGCAGCCAACTTTG
CCGGAGGACCCGGTCGGAGGCGACGATCCGAGACCGATGTCTAAGGCGTC
TGGATGAGACCGGGCTGCGAATCCTGTGAACGTTGAGGACGAACGTCAAC
TTTTTCCACCTAAACTTGGCCCATACTTTGATACTTTCCTAGATCTTTCA
TTTGCATTACGTTTAATTGTTTGTTATTCATTGTACATAAATATTTATTA
CGGAAATGTCCTCATGCAATTCATCAAAATTTTTTTTCCCTTCAAGAGTT
ATACGAAAATAATATTCAACAGATATCGAAATTATATATACCAAAGGCGA
ATAAAAGCGTTAAACTGTTGCTCCGAAAGAAAAAATGTTGAAAACAATTT
ATGCAAATTTTCATCCCAGATTTAACTCAGTGCTAATTGCTCGTTTTAAC
CCGAAAATATGGAAGAAAGGTAAAGAGAGAAGGGAGAAATTTAAATAAAT
ATATCCTAAATATATATTCAAGTGTAAGCATAATCGCGCAAAAAATCTTT
AACTAGGTATGTCTTACATAAACTAACAAAAATTTAAAAAAAAAGATCTA
CACAAATATACATACTTATATGCTAACAACACACTTTTGGCCCCCAAAAT
GAAGCCAACAAAAACAAAAAAACCCCAACGAAACTGAAAGTTTATTTTAT
CAATAGCCAACTTGGTCTCACGCGACTTTTAAGTATTGTAAATATAAATT
ATTAAAGCACACGTACAACTAATGCGATACAAATATATTACGGAATTCTA
CTTGCATATATATTTAATAATTATTGTGTCTATGCTGCAAACATATATCT
TAACGTGAGTCGGACACGATCAAATAAAAGTCTACATTTTGAGAAAAAAA
AAAAAAAAA

RH57020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 1295 Dh31-RA 4..1295 2..1293 6445 99.9 Plus
Dh31-RC 1311 Dh31-RC 17..1311 2..1293 6390 99.6 Plus
Dh31.a 799 Dh31.a 1..357 2..358 1770 99.7 Plus
Dh31.a 799 Dh31.a 522..799 359..636 1390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8490785..8491719 1293..359 4675 100 Minus
chr2L 23010047 chr2L 8491884..8492011 358..231 640 100 Minus
chr2L 23010047 chr2L 8492664..8492770 232..126 520 99.1 Minus
chr2L 23010047 chr2L 8505542..8505614 127..55 365 100 Minus
chr2L 23010047 chr2L 8505702..8505753 53..2 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8491866..8492802 1295..359 4685 100 Minus
2L 23513712 2L 8492967..8493094 358..231 640 100 Minus
2L 23513712 2L 8493747..8493853 232..126 535 100 Minus
2L 23513712 2L 8506634..8506706 127..55 365 100 Minus
2L 23513712 2L 8506794..8506845 53..2 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8491866..8492802 1295..359 4685 100 Minus
2L 23513712 2L 8492967..8493094 358..231 640 100 Minus
2L 23513712 2L 8493747..8493853 232..126 535 100 Minus
2L 23513712 2L 8506634..8506706 127..55 365 100 Minus
2L 23513712 2L 8506794..8506845 53..2 260 100 Minus
Blast to na_te.dros performed 2019-03-16 13:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 726..966 1134..901 128 55.1 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 709..848 885..1032 127 60.3 Plus
TAHRE 10463 TAHRE OSV 10463bp 7343..7411 966..1036 115 69.9 Plus

RH57020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:37 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8490785..8491719 359..1293 100 <- Minus
chr2L 8491884..8492009 233..358 100 <- Minus
chr2L 8492664..8492769 127..232 99 <- Minus
chr2L 8505543..8505614 55..126 100 <- Minus
chr2L 8505701..8505753 1..54 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:28:59 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 144..494 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:13 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 144..494 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:30 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 144..494 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:01 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 144..494 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:55 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 144..494 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:28:58 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..1292 2..1293 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:12 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..1292 2..1293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:30 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..1292 2..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:01 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..981 2..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:55 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..1292 2..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:37 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8491868..8492802 359..1293 100 <- Minus
2L 8492967..8493092 233..358 100 <- Minus
2L 8493747..8493852 127..232 100 <- Minus
2L 8506635..8506706 55..126 100 <- Minus
2L 8506793..8506845 1..54 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:37 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8491868..8492802 359..1293 100 <- Minus
2L 8492967..8493092 233..358 100 <- Minus
2L 8493747..8493852 127..232 100 <- Minus
2L 8506635..8506706 55..126 100 <- Minus
2L 8506793..8506845 1..54 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:37 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8491868..8492802 359..1293 100 <- Minus
2L 8492967..8493092 233..358 100 <- Minus
2L 8493747..8493852 127..232 100 <- Minus
2L 8506635..8506706 55..126 100 <- Minus
2L 8506793..8506845 1..54 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:30 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8506635..8506706 55..126 100 <- Minus
arm_2L 8506793..8506845 1..54 96   Minus
arm_2L 8491868..8492802 359..1293 100 <- Minus
arm_2L 8492967..8493092 233..358 100 <- Minus
arm_2L 8493747..8493852 127..232 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:23 Download gff for RH57020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8491868..8492802 359..1293 100 <- Minus
2L 8492967..8493092 233..358 100 <- Minus
2L 8493747..8493852 127..232 100 <- Minus
2L 8506635..8506706 55..126 100 <- Minus
2L 8506793..8506845 1..54 96   Minus

RH57020.hyp Sequence

Translation from 143 to 493

> RH57020.hyp
MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD
LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA
NFAGGPGRRRRSETDV*

RH57020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-PA 116 CG13094-PA 1..116 1..116 599 100 Plus
Dh31-PC 117 CG13094-PC 1..117 1..116 582 98.3 Plus

RH57020.pep Sequence

Translation from 143 to 493

> RH57020.pep
MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD
LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA
NFAGGPGRRRRSETDV*

RH57020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14370-PA 116 GF14370-PA 1..116 1..116 453 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24068-PA 116 GG24068-PA 1..116 1..116 605 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10771-PA 115 GH10771-PA 1..115 1..116 446 87.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-PA 116 CG13094-PA 1..116 1..116 599 100 Plus
Dh31-PC 117 CG13094-PC 1..117 1..116 582 98.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17634-PA 116 GI17634-PA 2..116 1..116 504 87.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25648-PA 119 GL25648-PA 1..119 1..116 506 89.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12042-PA 119 GA12042-PA 1..119 1..116 506 89.1 Plus
Dpse\GA22214-PA 119 GA22214-PA 1..119 1..116 504 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12880-PA 116 GM12880-PA 1..116 1..116 605 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22397-PA 116 GD22397-PA 1..116 1..116 605 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18199-PA 115 GJ18199-PA 1..115 1..116 491 85.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24837-PA 120 GK24837-PA 1..120 1..116 490 88.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10938-PA 116 GE10938-PA 1..116 1..116 605 100 Plus