Clone RH57501 Report

Search the DGRC for RH57501

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:575
Well:1
Vector:pFlc-1
Associated Gene/TranscriptRpS21-RA
Protein status:RH57501.pep: gold
Sequenced Size:406

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2986 2003-01-01 Sim4 clustering to Release 3
CG2986 2004-07-15 Blastp of sequenced clone
oho23B 2008-04-29 Release 5.5 accounting
oho23B 2008-08-15 Release 5.9 accounting
oho23B 2008-12-18 5.12 accounting

Clone Sequence Records

RH57501.complete Sequence

406 bp (406 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015189

> RH57501.complete
GCTTTCTCTTTTTCGCCTTCACCGACGAGTTGCGGTCGCTAGATTTGTAA
ATTTCTACAAAAAACCCAATAAAATGGAGAACGACGCCGGTGAGAATGTT
GATCTGTACGTGCCCCGCAAATGCTCGGCGTCCAACAGGATCATCCACGC
CAAGGATCACGCCTCCGTGCAGCTGAGCATCGTGGATGTGGACCCCGAGA
CCGGTCGCCAGACCGACGGTTCCAAGACCTACGCCATCTGCGGCGAGATC
CGTCGCATGGGCGAGTCCGACGACTGCATCGTGCGTCTGGCCAAGAAGGA
CGGCATCATTACCAAGAACTTCTAAGCGTGGCGTACCCATAGCTAGATTT
TGATTTGGTAATAAAGCGATTTCCCTTTGTAATTTAACGTAAAAAAAAAA
AAAAAA

RH57501.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
oho23B.a 458 oho23B.a 131..457 65..391 1635 100 Plus
oho23B.b 462 oho23B.b 135..461 65..391 1635 100 Plus
oho23B-RE 501 oho23B-RE 47..361 2..316 1575 100 Plus
oho23B-RE 501 oho23B-RE 423..498 316..391 380 100 Plus
oho23B.a 458 oho23B.a 44..107 2..65 320 100 Plus
oho23B.b 462 oho23B.b 44..107 2..65 320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2856052..2856245 123..316 970 100 Plus
chr2L 23010047 chr2L 2855789..2855851 2..64 315 100 Plus
chr2L 23010047 chr2L 2855923..2855981 65..123 295 100 Plus
chr2L 23010047 chr2L 2856317..2856374 333..390 290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2856376..2856569 123..316 970 100 Plus
2L 23513712 2L 2856631..2856706 316..391 380 100 Plus
2L 23513712 2L 2856113..2856175 2..64 315 100 Plus
2L 23513712 2L 2856247..2856305 65..123 295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2856376..2856569 123..316 970 100 Plus
2L 23513712 2L 2856631..2856706 316..391 380 100 Plus
2L 23513712 2L 2856113..2856175 2..64 315 100 Plus
2L 23513712 2L 2856247..2856305 65..123 295 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:29:53 has no hits.

RH57501.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:30:31 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2855788..2855851 1..64 98 -> Plus
chr2L 2855923..2855981 65..123 100 -> Plus
chr2L 2856053..2856244 124..315 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:26 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RB 1..252 74..325 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:47:40 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RB 1..252 74..325 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:36 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
RpS21-RA 1..252 74..325 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:28:43 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RB 1..252 74..325 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:41:21 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
RpS21-RA 1..252 74..325 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:57:05 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RA 43..432 1..390 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:47:40 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RA 43..432 1..390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:36 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
RpS21-RF 2..391 1..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:28:43 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
oho23B-RA 43..432 1..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:41:21 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
RpS21-RF 2..391 1..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:31 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2856631..2856705 316..390 100   Plus
2L 2856112..2856175 1..64 98 -> Plus
2L 2856247..2856305 65..123 100 -> Plus
2L 2856377..2856568 124..315 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:31 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2856631..2856705 316..390 100   Plus
2L 2856112..2856175 1..64 98 -> Plus
2L 2856247..2856305 65..123 100 -> Plus
2L 2856377..2856568 124..315 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:31 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2856631..2856705 316..390 100   Plus
2L 2856112..2856175 1..64 98 -> Plus
2L 2856247..2856305 65..123 100 -> Plus
2L 2856377..2856568 124..315 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:36 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2856112..2856175 1..64 98 -> Plus
arm_2L 2856247..2856305 65..123 100 -> Plus
arm_2L 2856377..2856568 124..315 100 -> Plus
arm_2L 2856631..2856705 316..390 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:05:12 Download gff for RH57501.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2856112..2856175 1..64 98 -> Plus
2L 2856247..2856305 65..123 100 -> Plus
2L 2856377..2856568 124..315 100 -> Plus
2L 2856631..2856705 316..390 100   Plus

RH57501.hyp Sequence

Translation from 0 to 324

> RH57501.hyp
LSLFRLHRRVAVARFVNFYKKPNKMENDAGENVDLYVPRKCSASNRIIHA
KDHASVQLSIVDVDPETGRQTDGSKTYAICGEIRRMGESDDCIVRLAKKD
GIITKNF*

RH57501.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
RpS21-PD 83 CG2986-PD 1..83 25..107 432 100 Plus
RpS21-PB 83 CG2986-PB 1..83 25..107 432 100 Plus
RpS21-PA 83 CG2986-PA 1..83 25..107 432 100 Plus
RpS21-PF 83 CG2986-PF 1..83 25..107 432 100 Plus
RpS21-PE 81 CG2986-PE 1..81 25..105 420 100 Plus

RH57501.pep Sequence

Translation from 73 to 324

> RH57501.pep
MENDAGENVDLYVPRKCSASNRIIHAKDHASVQLSIVDVDPETGRQTDGS
KTYAICGEIRRMGESDDCIVRLAKKDGIITKNF*

RH57501.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14986-PA 83 GF14986-PA 1..83 1..83 434 98.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24892-PA 83 GG24892-PA 1..83 1..83 436 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25136-PA 81 GH25136-PA 1..81 1..81 409 96.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpS21-PD 83 CG2986-PD 1..83 1..83 432 100 Plus
RpS21-PB 83 CG2986-PB 1..83 1..83 432 100 Plus
RpS21-PA 83 CG2986-PA 1..83 1..83 432 100 Plus
RpS21-PF 83 CG2986-PF 1..83 1..83 432 100 Plus
RpS21-PE 81 CG2986-PE 1..81 1..81 420 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19989-PA 83 GI19989-PA 1..83 1..83 423 96.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26288-PA 83 GL26288-PA 1..83 1..83 434 98.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15559-PA 83 GA15559-PA 1..83 1..83 434 98.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18373-PA 83 GM18373-PA 1..83 1..83 436 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23188-PA 83 GD23188-PA 1..83 1..83 434 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13417-PA 81 GJ13417-PA 1..81 1..81 409 96.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24281-PA 83 GK24281-PA 1..83 1..83 434 98.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18186-PA 83 GE18186-PA 1..83 1..83 436 100 Plus