Clone RH57538 Report

Search the DGRC for RH57538

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:575
Well:38
Vector:pFlc-1
Associated Gene/TranscriptPepck-RA
Protein status:RH57538.pep: gold
Preliminary Size:2481
Sequenced Size:2501

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17725 2002-01-01 Sim4 clustering to Release 2
CG17725 2003-01-01 Sim4 clustering to Release 3
CG17725 2003-01-22 Blastp of sequenced clone
Pepck 2008-04-29 Release 5.5 accounting
Pepck 2008-08-15 Release 5.9 accounting
Pepck 2008-12-18 5.12 accounting

Clone Sequence Records

RH57538.complete Sequence

2501 bp (2501 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003447

> RH57538.complete
GCTCAGTTACTCGTGGCCAGAGTAAATGGAAAGATCAAGTGAAAAGCCTA
CTTTCAGTGGTCTGAAAATCAAGTTGATGTTTGACAAAAAACTGTGGAAG
AACATATGAACGCAAAGTCCTCGACAGTAGAACACTAATTGTGATAATTA
CTCAAATTGTGATAAGCGAATTAAGCAAAGTGCCAAAAACCCTTTCACGC
GCAGAAAAATCTAATAAAAATATTCCAAACTTTTTTTCGAGAAAAATTCA
TAAAAAACAACACAAACAAAATGCCTGAGCTCATTGAACAAAGCAAAATT
ATCTCCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGA
CAATTGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAA
ATGTGGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATC
GCCCTCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGA
GAACAAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGC
TGCCCAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTG
GCCCGCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGAC
GATTCCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCT
CGCCCAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATG
AAGGGTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGCTC
CCCGCTCTCTAAGATCGGAATCGAACTGACGGACTCTGCTTACGTGGTGG
CCTCCATGAGGATCATGACACGCATGGGAGCCGCTGTCTTGCGCCAGCTG
GCCAAGAAGGAGGAATTCGTCCGCGCCCTACACTCTGTGGGCGCCCCTGC
CAACGGACAGGTGGAGCAGCCATCCTGGCCTTGTGATCCCGAACGCACCA
TCATCCTGCACAAGCCCGCCGAGAACCTTATTGTGTCTTACGGATCGGGC
TACGGCGGCAACTCGCTGCTGGGCAAGAAGTGCTTCGCCCTGAGGATTGG
CAGCACCATTGCCAAGCAGGAGGGCTGGCTGGCCGAGCACATGTTGATTC
TGGGCATCACCGATCCCAAGGGCGAGAAGAAGTACATCACTGCCGCCTTT
CCCTCGGCCTGTGGCAAGACCAATCTGGCCATGCTGAATCCCTCGTTGGC
CAACTACAAGGTGGAATGCGTGGGCGACGACATTGCGTGGATGAAGTTTG
ACTCGCAGGGAGTGCTGCGTGCCATCAACCCAGAGAATGGATTCTTTGGT
GTGGCTCCAGGAACCTCAATGGAGACCAATCCCATTGCCATGAACACTGT
TTTCAAGAACACCATCTTCACGAACGTGGCCTCCACCTCTGATGGCGGTG
TGTTCTGGGAGGGCATGGAAAGCAGTCTGGCTCCCAATGTCCAAATCACT
GACTGGTTGGGCAAACCCTGGACCAAGGATTCCGGCAAGCCCGCTGCGCA
TCCCAACTCCCGCTTCTGCACTCCAGCCGCCCAGTGCCCGATTATCGATG
AAGCCTGGGAAGATCCGGCGGGAGTGCCCATCTCCGCCATGCTCTTCGGA
GGACGTCGTCCCGCCGGAGTGCCCCTAATCTATGAGGCTCGGGACTGGAC
CCACGGAGTCTTCATTGGAGCAGCCATGAGGAGTGAGGCCACTGCTGCGG
CCGAGCACAAGGGCAAGGTGATCATGCACGATCCGTTCGCCATGAGGCCC
TTCTTTGGCTACAACTTTGGCGACTACGTGGCCCACTGGCTGAGCATGGA
GAAGCGTGGTCAGGTGCCAAAGATCTTCCACGTCAACTGGTTCCGCAAGA
GTGCCGAGGGCAAGTTCATGTGGCCCGGATACGGAGAGAACTCCCGTGTG
CTGGAATGGATCCTGCGCAGGGTCAATGGCGAATCCTGCTACGTGGACTC
GGCCATTGGACACATTCCCGCCGAGGGTGCCCTAAACCTCGATGGCATGA
AGGATAAGGTGGACGTGAAGGAGATCTTCTCGCTGCCCAAGGAGTTCTGG
TCGCAGGAGGTCAAGGATATTCGCACCTACTTCGAGTCACAGGTGGGCGC
CGATCTTCCGGCCAGCATTTACCAGCAGCTGGACGAGCTATCTTCCCGCG
TAGACAACCTGTAAGAAGGATCAATGAGGAGAGTCCCATCTACAGCATCT
TTACCTGCCCACACACCTGCTCACCCACTGTGCTATCCCGTACTGACCCC
ATCACCAACCCAATTTGTTAACCTGTCCTAAATACCTGTCCCCAATACCT
TATTTAGTCGTTTCTCTAGTTCTTAAGCCGAAGACTTCCAAACTATTTAT
TATATAAGCAGCCATAAGATTAGCAAGTAGGCCATACAAACAGAGAAAAT
TAAAAAAAAAATAAAACAACACGATTTTATAACCCAAAAAAAAAAAAAAA
A

RH57538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck-RA 2625 Pepck-RA 30..2511 3..2484 12410 100 Plus
Pepck-RB 2653 Pepck-RB 464..2649 299..2484 10915 99.9 Plus
Pepck-RB 2653 Pepck-RB 4..303 3..302 1500 100 Plus
CG10924-RB 3153 CG10924-RB 1233..1746 1496..2009 1055 80.3 Plus
CG10924-RB 3153 CG10924-RB 706..978 969..1241 675 83.1 Plus
CG10924-RB 3153 CG10924-RB 468..603 734..869 320 82.3 Plus
CG10924-RB 3153 CG10924-RB 991..1129 1254..1392 305 81.2 Plus
CG10924-RB 3153 CG10924-RB 284..336 550..602 190 90.5 Plus
CG10924-RB 3153 CG10924-RB 1152..1208 1415..1471 165 85.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14424342..14426527 299..2484 10600 99 Plus
chr2R 21145070 chr2R 14420422..14421462 969..2009 1935 79.1 Plus
chr2R 21145070 chr2R 14423882..14424181 3..302 1485 99.7 Plus
chr2R 21145070 chr2R 14420184..14420319 734..869 350 83.8 Plus
chr2R 21145070 chr2R 14420000..14420052 550..602 190 90.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18537230..18539415 299..2484 10915 100 Plus
2R 25286936 2R 18533311..18534351 969..2009 1920 79 Plus
2R 25286936 2R 18536770..18537069 3..302 1500 100 Plus
2R 25286936 2R 18533073..18533208 734..869 320 82.4 Plus
2R 25286936 2R 18532889..18532941 550..602 190 90.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18538429..18540614 299..2484 10915 99.9 Plus
2R 25260384 2R 18537969..18538268 3..302 1500 100 Plus
2R 25260384 2R 18535037..18535550 1496..2009 1055 80.3 Plus
2R 25260384 2R 18534510..18534782 969..1241 675 83.1 Plus
2R 25260384 2R 18534272..18534407 734..869 320 82.3 Plus
2R 25260384 2R 18534795..18534933 1254..1392 305 81.2 Plus
2R 25260384 2R 18534088..18534140 550..602 190 90.5 Plus
2R 25260384 2R 18534956..18535012 1415..1471 165 85.9 Plus
Blast to na_te.dros performed 2019-03-16 23:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 980..1080 205..305 153 66.3 Plus

RH57538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:48:15 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14423879..14424181 1..302 99 -> Plus
chr2R 14424346..14426527 303..2485 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:27 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..1944 271..2214 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:02 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..1944 271..2214 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:24:51 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..1944 271..2214 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:06 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..1944 271..2214 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:52 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..1944 271..2214 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:08:48 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..2485 1..2485 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:01 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..2485 1..2485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:24:51 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..2485 1..2484 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:06 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..2485 1..2485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:52 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1..2485 1..2485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:15 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18536767..18537069 1..302 99 -> Plus
2R 18537234..18539415 303..2485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:15 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18536767..18537069 1..302 99 -> Plus
2R 18537234..18539415 303..2485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:15 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18536767..18537069 1..302 99 -> Plus
2R 18537234..18539415 303..2485 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:24:51 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14424272..14424574 1..302 99 -> Plus
arm_2R 14424739..14426920 303..2485 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:03 Download gff for RH57538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18537966..18538268 1..302 99 -> Plus
2R 18538433..18540614 303..2485 99   Plus

RH57538.pep Sequence

Translation from 270 to 2213

> RH57538.pep
MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT
GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC
WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA
AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT
RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA
ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK
GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR
AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME
SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA
GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV
IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM
WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK
EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*

RH57538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11971-PA 647 GF11971-PA 1..647 1..647 3300 93.4 Plus
Dana\GF11970-PA 639 GF11970-PA 2..639 4..647 2492 69.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21904-PA 647 GG21904-PA 1..647 1..647 3400 97.1 Plus
Dere\GG21903-PA 639 GG21903-PA 11..639 16..647 2463 69.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22963-PA 647 GH22963-PA 1..647 1..647 3162 89.5 Plus
Dgri\GH22961-PA 639 GH22961-PA 27..639 36..647 2547 74.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck1-PA 647 CG17725-PA 1..647 1..647 3448 100 Plus
Pepck2-PA 638 CG10924-PA 11..638 16..647 2447 70 Plus
Pepck2-PB 563 CG10924-PB 1..563 85..647 2315 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18450-PA 647 GI18450-PA 1..647 1..647 3155 89.2 Plus
Dmoj\GI18449-PA 639 GI18449-PA 2..639 4..647 2516 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17082-PA 639 GL17082-PA 2..639 4..647 2531 70.5 Plus
Dper\GL17083-PA 498 GL17083-PA 69..498 220..647 1923 82.8 Plus
Dper\GL17083-PA 498 GL17083-PA 36..109 12..85 362 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14628-PA 647 GA14628-PA 1..647 1..647 3254 91.5 Plus
Dpse\GA10647-PA 639 GA10647-PA 2..639 4..647 2533 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21895-PA 647 GM21895-PA 1..647 1..647 3431 98.1 Plus
Dsec\GM21894-PA 639 GM21894-PA 11..639 16..647 2456 69.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11392-PA 647 GD11392-PA 1..647 1..647 3442 98.8 Plus
Dsim\GD11391-PA 639 GD11391-PA 11..639 16..647 2460 69.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21535-PA 647 GJ21535-PA 1..647 1..647 3182 90 Plus
Dvir\GJ21534-PA 639 GJ21534-PA 2..639 4..647 2534 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17957-PA 647 GK17957-PA 1..647 1..647 3256 91.7 Plus
Dwil\GK17956-PA 641 GK17956-PA 28..641 36..647 2505 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11980-PA 647 GE11980-PA 1..647 1..647 3421 97.7 Plus
Dyak\GE11979-PA 639 GE11979-PA 19..639 28..647 2453 70.2 Plus

RH57538.hyp Sequence

Translation from 270 to 2213

> RH57538.hyp
MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT
GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC
WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA
AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT
RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA
ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK
GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR
AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME
SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA
GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV
IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM
WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK
EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*

RH57538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck-PA 647 CG17725-PA 1..647 1..647 3448 100 Plus
CG10924-PA 638 CG10924-PA 11..638 16..647 2447 70 Plus
CG10924-PB 563 CG10924-PB 1..563 85..647 2315 73.6 Plus