BDGP Sequence Production Resources |
Search the DGRC for RH57538
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 575 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pepck-RA |
Protein status: | RH57538.pep: gold |
Preliminary Size: | 2481 |
Sequenced Size: | 2501 |
Gene | Date | Evidence |
---|---|---|
CG17725 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17725 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17725 | 2003-01-22 | Blastp of sequenced clone |
Pepck | 2008-04-29 | Release 5.5 accounting |
Pepck | 2008-08-15 | Release 5.9 accounting |
Pepck | 2008-12-18 | 5.12 accounting |
2501 bp (2501 high quality bases) assembled on 2003-01-22
GenBank Submission: BT003447
> RH57538.complete GCTCAGTTACTCGTGGCCAGAGTAAATGGAAAGATCAAGTGAAAAGCCTA CTTTCAGTGGTCTGAAAATCAAGTTGATGTTTGACAAAAAACTGTGGAAG AACATATGAACGCAAAGTCCTCGACAGTAGAACACTAATTGTGATAATTA CTCAAATTGTGATAAGCGAATTAAGCAAAGTGCCAAAAACCCTTTCACGC GCAGAAAAATCTAATAAAAATATTCCAAACTTTTTTTCGAGAAAAATTCA TAAAAAACAACACAAACAAAATGCCTGAGCTCATTGAACAAAGCAAAATT ATCTCCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGA CAATTGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAA ATGTGGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATC GCCCTCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGA GAACAAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGC TGCCCAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTG GCCCGCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGAC GATTCCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCT CGCCCAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATG AAGGGTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGCTC CCCGCTCTCTAAGATCGGAATCGAACTGACGGACTCTGCTTACGTGGTGG CCTCCATGAGGATCATGACACGCATGGGAGCCGCTGTCTTGCGCCAGCTG GCCAAGAAGGAGGAATTCGTCCGCGCCCTACACTCTGTGGGCGCCCCTGC CAACGGACAGGTGGAGCAGCCATCCTGGCCTTGTGATCCCGAACGCACCA TCATCCTGCACAAGCCCGCCGAGAACCTTATTGTGTCTTACGGATCGGGC TACGGCGGCAACTCGCTGCTGGGCAAGAAGTGCTTCGCCCTGAGGATTGG CAGCACCATTGCCAAGCAGGAGGGCTGGCTGGCCGAGCACATGTTGATTC TGGGCATCACCGATCCCAAGGGCGAGAAGAAGTACATCACTGCCGCCTTT CCCTCGGCCTGTGGCAAGACCAATCTGGCCATGCTGAATCCCTCGTTGGC CAACTACAAGGTGGAATGCGTGGGCGACGACATTGCGTGGATGAAGTTTG ACTCGCAGGGAGTGCTGCGTGCCATCAACCCAGAGAATGGATTCTTTGGT GTGGCTCCAGGAACCTCAATGGAGACCAATCCCATTGCCATGAACACTGT TTTCAAGAACACCATCTTCACGAACGTGGCCTCCACCTCTGATGGCGGTG TGTTCTGGGAGGGCATGGAAAGCAGTCTGGCTCCCAATGTCCAAATCACT GACTGGTTGGGCAAACCCTGGACCAAGGATTCCGGCAAGCCCGCTGCGCA TCCCAACTCCCGCTTCTGCACTCCAGCCGCCCAGTGCCCGATTATCGATG AAGCCTGGGAAGATCCGGCGGGAGTGCCCATCTCCGCCATGCTCTTCGGA GGACGTCGTCCCGCCGGAGTGCCCCTAATCTATGAGGCTCGGGACTGGAC CCACGGAGTCTTCATTGGAGCAGCCATGAGGAGTGAGGCCACTGCTGCGG CCGAGCACAAGGGCAAGGTGATCATGCACGATCCGTTCGCCATGAGGCCC TTCTTTGGCTACAACTTTGGCGACTACGTGGCCCACTGGCTGAGCATGGA GAAGCGTGGTCAGGTGCCAAAGATCTTCCACGTCAACTGGTTCCGCAAGA GTGCCGAGGGCAAGTTCATGTGGCCCGGATACGGAGAGAACTCCCGTGTG CTGGAATGGATCCTGCGCAGGGTCAATGGCGAATCCTGCTACGTGGACTC GGCCATTGGACACATTCCCGCCGAGGGTGCCCTAAACCTCGATGGCATGA AGGATAAGGTGGACGTGAAGGAGATCTTCTCGCTGCCCAAGGAGTTCTGG TCGCAGGAGGTCAAGGATATTCGCACCTACTTCGAGTCACAGGTGGGCGC CGATCTTCCGGCCAGCATTTACCAGCAGCTGGACGAGCTATCTTCCCGCG TAGACAACCTGTAAGAAGGATCAATGAGGAGAGTCCCATCTACAGCATCT TTACCTGCCCACACACCTGCTCACCCACTGTGCTATCCCGTACTGACCCC ATCACCAACCCAATTTGTTAACCTGTCCTAAATACCTGTCCCCAATACCT TATTTAGTCGTTTCTCTAGTTCTTAAGCCGAAGACTTCCAAACTATTTAT TATATAAGCAGCCATAAGATTAGCAAGTAGGCCATACAAACAGAGAAAAT TAAAAAAAAAATAAAACAACACGATTTTATAACCCAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pepck-RA | 2625 | Pepck-RA | 30..2511 | 3..2484 | 12410 | 100 | Plus |
Pepck-RB | 2653 | Pepck-RB | 464..2649 | 299..2484 | 10915 | 99.9 | Plus |
Pepck-RB | 2653 | Pepck-RB | 4..303 | 3..302 | 1500 | 100 | Plus |
CG10924-RB | 3153 | CG10924-RB | 1233..1746 | 1496..2009 | 1055 | 80.3 | Plus |
CG10924-RB | 3153 | CG10924-RB | 706..978 | 969..1241 | 675 | 83.1 | Plus |
CG10924-RB | 3153 | CG10924-RB | 468..603 | 734..869 | 320 | 82.3 | Plus |
CG10924-RB | 3153 | CG10924-RB | 991..1129 | 1254..1392 | 305 | 81.2 | Plus |
CG10924-RB | 3153 | CG10924-RB | 284..336 | 550..602 | 190 | 90.5 | Plus |
CG10924-RB | 3153 | CG10924-RB | 1152..1208 | 1415..1471 | 165 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14424342..14426527 | 299..2484 | 10600 | 99 | Plus |
chr2R | 21145070 | chr2R | 14420422..14421462 | 969..2009 | 1935 | 79.1 | Plus |
chr2R | 21145070 | chr2R | 14423882..14424181 | 3..302 | 1485 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 14420184..14420319 | 734..869 | 350 | 83.8 | Plus |
chr2R | 21145070 | chr2R | 14420000..14420052 | 550..602 | 190 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18537230..18539415 | 299..2484 | 10915 | 100 | Plus |
2R | 25286936 | 2R | 18533311..18534351 | 969..2009 | 1920 | 79 | Plus |
2R | 25286936 | 2R | 18536770..18537069 | 3..302 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 18533073..18533208 | 734..869 | 320 | 82.4 | Plus |
2R | 25286936 | 2R | 18532889..18532941 | 550..602 | 190 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18538429..18540614 | 299..2484 | 10915 | 99.9 | Plus |
2R | 25260384 | 2R | 18537969..18538268 | 3..302 | 1500 | 100 | Plus |
2R | 25260384 | 2R | 18535037..18535550 | 1496..2009 | 1055 | 80.3 | Plus |
2R | 25260384 | 2R | 18534510..18534782 | 969..1241 | 675 | 83.1 | Plus |
2R | 25260384 | 2R | 18534272..18534407 | 734..869 | 320 | 82.3 | Plus |
2R | 25260384 | 2R | 18534795..18534933 | 1254..1392 | 305 | 81.2 | Plus |
2R | 25260384 | 2R | 18534088..18534140 | 550..602 | 190 | 90.5 | Plus |
2R | 25260384 | 2R | 18534956..18535012 | 1415..1471 | 165 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 980..1080 | 205..305 | 153 | 66.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14423879..14424181 | 1..302 | 99 | -> | Plus |
chr2R | 14424346..14426527 | 303..2485 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..1944 | 271..2214 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..1944 | 271..2214 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..1944 | 271..2214 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..1944 | 271..2214 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..1944 | 271..2214 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..2485 | 1..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..2485 | 1..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..2485 | 1..2484 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..2485 | 1..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pepck-RA | 1..2485 | 1..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18536767..18537069 | 1..302 | 99 | -> | Plus |
2R | 18537234..18539415 | 303..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18536767..18537069 | 1..302 | 99 | -> | Plus |
2R | 18537234..18539415 | 303..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18536767..18537069 | 1..302 | 99 | -> | Plus |
2R | 18537234..18539415 | 303..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14424272..14424574 | 1..302 | 99 | -> | Plus |
arm_2R | 14424739..14426920 | 303..2485 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18537966..18538268 | 1..302 | 99 | -> | Plus |
2R | 18538433..18540614 | 303..2485 | 99 | Plus |
Translation from 270 to 2213
> RH57538.pep MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11971-PA | 647 | GF11971-PA | 1..647 | 1..647 | 3300 | 93.4 | Plus |
Dana\GF11970-PA | 639 | GF11970-PA | 2..639 | 4..647 | 2492 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21904-PA | 647 | GG21904-PA | 1..647 | 1..647 | 3400 | 97.1 | Plus |
Dere\GG21903-PA | 639 | GG21903-PA | 11..639 | 16..647 | 2463 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22963-PA | 647 | GH22963-PA | 1..647 | 1..647 | 3162 | 89.5 | Plus |
Dgri\GH22961-PA | 639 | GH22961-PA | 27..639 | 36..647 | 2547 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pepck1-PA | 647 | CG17725-PA | 1..647 | 1..647 | 3448 | 100 | Plus |
Pepck2-PA | 638 | CG10924-PA | 11..638 | 16..647 | 2447 | 70 | Plus |
Pepck2-PB | 563 | CG10924-PB | 1..563 | 85..647 | 2315 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18450-PA | 647 | GI18450-PA | 1..647 | 1..647 | 3155 | 89.2 | Plus |
Dmoj\GI18449-PA | 639 | GI18449-PA | 2..639 | 4..647 | 2516 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17082-PA | 639 | GL17082-PA | 2..639 | 4..647 | 2531 | 70.5 | Plus |
Dper\GL17083-PA | 498 | GL17083-PA | 69..498 | 220..647 | 1923 | 82.8 | Plus |
Dper\GL17083-PA | 498 | GL17083-PA | 36..109 | 12..85 | 362 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14628-PA | 647 | GA14628-PA | 1..647 | 1..647 | 3254 | 91.5 | Plus |
Dpse\GA10647-PA | 639 | GA10647-PA | 2..639 | 4..647 | 2533 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21895-PA | 647 | GM21895-PA | 1..647 | 1..647 | 3431 | 98.1 | Plus |
Dsec\GM21894-PA | 639 | GM21894-PA | 11..639 | 16..647 | 2456 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11392-PA | 647 | GD11392-PA | 1..647 | 1..647 | 3442 | 98.8 | Plus |
Dsim\GD11391-PA | 639 | GD11391-PA | 11..639 | 16..647 | 2460 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21535-PA | 647 | GJ21535-PA | 1..647 | 1..647 | 3182 | 90 | Plus |
Dvir\GJ21534-PA | 639 | GJ21534-PA | 2..639 | 4..647 | 2534 | 70.9 | Plus |
Translation from 270 to 2213
> RH57538.hyp MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pepck-PA | 647 | CG17725-PA | 1..647 | 1..647 | 3448 | 100 | Plus |
CG10924-PA | 638 | CG10924-PA | 11..638 | 16..647 | 2447 | 70 | Plus |
CG10924-PB | 563 | CG10924-PB | 1..563 | 85..647 | 2315 | 73.6 | Plus |