Clone RH58004 Report

Search the DGRC for RH58004

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:580
Well:4
Vector:pFlc-1
Associated Gene/TranscriptCG6145-RC
Protein status:RH58004.pep: gold
Preliminary Size:1798
Sequenced Size:2290

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6145 2004-04-27 Blastp of sequenced clone
CG6145 2008-04-29 Release 5.5 accounting
CG6145 2008-08-15 Release 5.9 accounting
CG6145 2008-12-18 5.12 accounting

Clone Sequence Records

RH58004.complete Sequence

2290 bp (2290 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014633

> RH58004.complete
GATCGCATATTCACCGGACAGCACGGTCGTGTTCGCTCTCAAACTGAAAC
TCACCTGTCGATCGTGGAACGTTGTTTTGTTGCTCGCTTTTCGACTCGGT
CGTTTACCTACCTTACCCGCTTGCCGTCGATCGCTGTGGCAAAATGTTTT
AGCAACGCGAATCACCTGTGAACATTTTGAGTGATATTTCATAATTAGCA
ATCAAAAGACTTGAACATGACGTGCCTGTCGGACATTGACCTGGCCACCC
TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT
GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA
TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA
GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT
CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT
CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA
GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT
ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG
TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG
ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG
GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT
GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG
TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAA
AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA
CTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGC
TGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTT
GGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAGGTGACCAA
TGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCT
CCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGCACTCGGTG
GGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAACTACGTGGA
GCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAACAATGGCC
ACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACCGAGGACCC
TCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAATACATTAC
GTCGGTGCAGGGCGATGGCCTGATCGTATCGACGCCCACGGGAAGTACAG
CATATGCGGCAGCAGCCGGTGCCTCCATGATCCATCCCTCCGTGCCGGCC
ATTTTGGTGACGCCCATTTGCCCGCACTCGCTGAGCTTCAGGCCCATTGT
GGTGCCCGCCGGAGTGGAGCTAAAGATATCAATTTCACCTGATAGCCGCA
ACACCTCACGCGTTTCCTTCGACGGACGCAACGACCAGGAGCTGAACCAT
GGGGACAGCCTGCGAGTGACCACCTCAATCTATCCCGTGCCCAGCATTTG
CTCCCAGGACCAAATCTCCGATTGGTTTGACTCCCTGGCCGAGGGTCTGC
ACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGATGAGCTGTCGGACTTG
ACCACTTCGGGGTCGGAGGACACGCTCGATGACTTTGACAATCTTCAGAT
CTACGATGCGTAATGGCAGCCAAACCCAATCACTGTTTGTTAGCGTGGCC
AATTAGACTAGTTGTAGTCGTAGTTTTTAGGGCTTGTGTGCTAGTGTGCA
ATTTGGTAGGCTTAATTATGTAGGAAAAATACTCTGTTGTACTATATACA
CTTTAAGTCGCTTGGTTGAAATGTTAAATGTTAATTGATTCCGATCGCAA
TGTTTGCTTAAGCTAGACCTATTCTGTTGATTCTTGTGAACAAAAAAAAA
AATTACAGCTTACGCTTAGCTCTTAAGTTTTTATTATTACAAAACATACG
ACTAATTGCGTCGAGTGCTAAGTACTTAAGCTGACTCGCGTTATCTGTAC
AATTCGATGGAGGTAATAAAAACTGTATTATTTACTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RH58004.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-RC 2363 CG6145-RC 108..2346 2..2240 11195 100 Plus
CG6145-RB 1874 CG6145-RB 158..1859 539..2240 8510 100 Plus
CG6145-RA 2304 CG6145-RA 587..2287 540..2240 8505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9424689..9425352 2237..1574 3320 100 Minus
chr2R 21145070 chr2R 9425499..9426156 1575..918 3290 100 Minus
chr2R 21145070 chr2R 9429461..9429865 540..136 2025 100 Minus
chr2R 21145070 chr2R 9426273..9426650 917..540 1890 100 Minus
chr2R 21145070 chr2R 9436255..9436525 1575..1305 770 85.6 Minus
chr2R 21145070 chr2R 9432609..9432743 136..2 675 100 Minus
chr2R 21145070 chr2R 9436607..9436837 1148..918 585 83.5 Minus
chr2R 21145070 chr2R 9436969..9437217 785..540 580 83.1 Minus
chr2R 21145070 chr2R 9435945..9436197 1826..1574 545 81 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13537385..13538051 2240..1574 3335 100 Minus
2R 25286936 2R 13538198..13538855 1575..918 3290 100 Minus
2R 25286936 2R 13542160..13542564 540..136 2025 100 Minus
2R 25286936 2R 13538972..13539349 917..540 1890 100 Minus
2R 25286936 2R 13548954..13549224 1575..1305 770 85.6 Minus
2R 25286936 2R 13545308..13545442 136..2 675 100 Minus
2R 25286936 2R 13549306..13549536 1148..918 585 83.5 Minus
2R 25286936 2R 13549668..13549916 785..540 580 83.1 Minus
2R 25286936 2R 13548644..13548896 1826..1574 545 81 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13538584..13539250 2240..1574 3335 100 Minus
2R 25260384 2R 13539397..13540054 1575..918 3290 100 Minus
2R 25260384 2R 13543359..13543763 540..136 2025 100 Minus
2R 25260384 2R 13540171..13540548 917..540 1890 100 Minus
2R 25260384 2R 13550153..13550423 1575..1305 770 85.6 Minus
2R 25260384 2R 13546507..13546641 136..2 675 100 Minus
2R 25260384 2R 13550505..13550735 1148..918 585 83.5 Minus
2R 25260384 2R 13549843..13550095 1826..1574 545 81 Minus
2R 25260384 2R 13550959..13551115 696..540 485 87.2 Minus
2R 25260384 2R 13550867..13550944 785..708 210 84.6 Minus
Blast to na_te.dros performed on 2019-03-16 15:42:57 has no hits.

RH58004.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:43:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9424689..9425350 1576..2237 100 <- Minus
chr2R 9425499..9426156 918..1575 100 <- Minus
chr2R 9426273..9426650 540..917 100 <- Minus
chr2R 9429462..9429864 137..539 100 <- Minus
chr2R 9432609..9432743 1..136 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..1647 217..1863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:47 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..1647 217..1863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:17:15 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..1647 217..1863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:36 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..1647 217..1863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:47:09 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..1647 217..1863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:44:09 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..2236 2..2237 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:47 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..2236 2..2237 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:15 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 7..2243 1..2237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 1..2236 2..2237 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:47:09 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
CG6145-RC 7..2243 1..2237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537388..13538049 1576..2237 100 <- Minus
2R 13538198..13538855 918..1575 100 <- Minus
2R 13538972..13539349 540..917 100 <- Minus
2R 13542161..13542563 137..539 100 <- Minus
2R 13545308..13545442 1..136 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537388..13538049 1576..2237 100 <- Minus
2R 13538198..13538855 918..1575 100 <- Minus
2R 13538972..13539349 540..917 100 <- Minus
2R 13542161..13542563 137..539 100 <- Minus
2R 13545308..13545442 1..136 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:43:37 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13537388..13538049 1576..2237 100 <- Minus
2R 13538198..13538855 918..1575 100 <- Minus
2R 13538972..13539349 540..917 100 <- Minus
2R 13542161..13542563 137..539 100 <- Minus
2R 13545308..13545442 1..136 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:15 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9424893..9425554 1576..2237 100 <- Minus
arm_2R 9425703..9426360 918..1575 100 <- Minus
arm_2R 9426477..9426854 540..917 100 <- Minus
arm_2R 9429666..9430068 137..539 100 <- Minus
arm_2R 9432813..9432947 1..136 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:56 Download gff for RH58004.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13546507..13546641 1..136 99   Minus
2R 13538587..13539248 1576..2237 100 <- Minus
2R 13539397..13540054 918..1575 100 <- Minus
2R 13540171..13540548 540..917 100 <- Minus
2R 13543360..13543762 137..539 100 <- Minus

RH58004.hyp Sequence

Translation from 216 to 1862

> RH58004.hyp
MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR
QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR
RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV
KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL
GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH
AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ
TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD
GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV
ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI
SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDA*

RH58004.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PC 548 CG6145-PC 1..548 1..548 2860 100 Plus
CG6145-PA 520 CG6145-PA 79..520 107..548 2293 99.8 Plus
CG6145-PF 484 CG6145-PF 35..484 100..548 2292 98.9 Plus
CG6145-PE 483 CG6145-PE 8..483 64..548 2292 92.6 Plus
CG6145-PB 420 CG6145-PB 1..420 129..548 2173 100 Plus

RH58004.pep Sequence

Translation from 216 to 1862

> RH58004.pep
MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR
QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR
RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV
KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL
GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH
AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ
TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD
GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV
ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI
SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDA*

RH58004.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11178-PA 544 GF11178-PA 1..544 1..548 2421 87.2 Plus
Dana\GF11176-PA 543 GF11176-PA 1..543 1..548 1664 62.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22483-PA 549 GG22483-PA 1..549 1..548 2828 96.4 Plus
Dere\GG22480-PA 643 GG22480-PA 121..642 4..547 1639 61.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22633-PA 564 GH22633-PA 1..564 1..548 2168 78.1 Plus
Dgri\GH22631-PA 442 GH22631-PA 44..442 104..548 1697 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6145-PC 548 CG6145-PC 1..548 1..548 2860 100 Plus
CG6145-PA 520 CG6145-PA 79..520 107..548 2293 99.8 Plus
CG6145-PF 484 CG6145-PF 35..484 100..548 2292 98.9 Plus
CG6145-PE 483 CG6145-PE 8..483 64..548 2292 92.6 Plus
CG6145-PB 420 CG6145-PB 1..420 129..548 2173 100 Plus
CG33156-PE 490 CG33156-PE 3..489 4..547 1717 65.9 Plus
CG33156-PF 450 CG33156-PF 23..449 68..547 1634 70.3 Plus
CG33156-PA 454 CG33156-PA 20..453 66..547 1631 69.4 Plus
CG33156-PB 453 CG33156-PB 59..452 109..547 1617 74.3 Plus
CG33156-PC 375 CG33156-PC 1..374 129..547 1519 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21329-PA 560 GI21329-PA 1..560 1..548 2152 77.9 Plus
Dmoj\GI21327-PA 412 GI21327-PA 3..412 104..548 1642 71.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17067-PA 557 GL17067-PA 1..550 1..548 2486 87.7 Plus
Dper\GL17065-PA 546 GL17065-PA 54..545 1..547 1782 67.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24350-PA 557 GA24350-PA 1..550 1..548 2473 87.3 Plus
Dpse\GA17329-PA 605 GA17329-PA 214..604 109..547 1641 75.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20270-PA 548 GM20270-PA 1..548 1..548 2876 97.6 Plus
Dsec\GM20268-PA 523 GM20268-PA 3..523 4..548 1636 61.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25753-PA 519 GD25753-PA 78..519 107..548 2325 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19674-PA 557 GJ19674-PA 1..557 1..548 2182 78.3 Plus
Dvir\GJ19672-PA 448 GJ19672-PA 44..448 95..548 1684 73 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15610-PA 569 GK15610-PA 1..569 1..548 2296 81.4 Plus
Dwil\GK15608-PA 475 GK15608-PA 1..474 1..547 1762 65.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13354-PA 522 GE13354-PA 77..522 103..548 2338 98 Plus
Dyak\GE13352-PA 454 GE13352-PA 55..453 104..547 1608 73.7 Plus