BDGP Sequence Production Resources |
Search the DGRC for RH58004
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 580 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6145-RC |
Protein status: | RH58004.pep: gold |
Preliminary Size: | 1798 |
Sequenced Size: | 2290 |
Gene | Date | Evidence |
---|---|---|
CG6145 | 2004-04-27 | Blastp of sequenced clone |
CG6145 | 2008-04-29 | Release 5.5 accounting |
CG6145 | 2008-08-15 | Release 5.9 accounting |
CG6145 | 2008-12-18 | 5.12 accounting |
2290 bp (2290 high quality bases) assembled on 2004-04-27
GenBank Submission: BT014633
> RH58004.complete GATCGCATATTCACCGGACAGCACGGTCGTGTTCGCTCTCAAACTGAAAC TCACCTGTCGATCGTGGAACGTTGTTTTGTTGCTCGCTTTTCGACTCGGT CGTTTACCTACCTTACCCGCTTGCCGTCGATCGCTGTGGCAAAATGTTTT AGCAACGCGAATCACCTGTGAACATTTTGAGTGATATTTCATAATTAGCA ATCAAAAGACTTGAACATGACGTGCCTGTCGGACATTGACCTGGCCACCC TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAA AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA CTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGC TGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTT GGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAGGTGACCAA TGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCT CCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGCACTCGGTG GGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAACTACGTGGA GCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAACAATGGCC ACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACCGAGGACCC TCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAATACATTAC GTCGGTGCAGGGCGATGGCCTGATCGTATCGACGCCCACGGGAAGTACAG CATATGCGGCAGCAGCCGGTGCCTCCATGATCCATCCCTCCGTGCCGGCC ATTTTGGTGACGCCCATTTGCCCGCACTCGCTGAGCTTCAGGCCCATTGT GGTGCCCGCCGGAGTGGAGCTAAAGATATCAATTTCACCTGATAGCCGCA ACACCTCACGCGTTTCCTTCGACGGACGCAACGACCAGGAGCTGAACCAT GGGGACAGCCTGCGAGTGACCACCTCAATCTATCCCGTGCCCAGCATTTG CTCCCAGGACCAAATCTCCGATTGGTTTGACTCCCTGGCCGAGGGTCTGC ACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGATGAGCTGTCGGACTTG ACCACTTCGGGGTCGGAGGACACGCTCGATGACTTTGACAATCTTCAGAT CTACGATGCGTAATGGCAGCCAAACCCAATCACTGTTTGTTAGCGTGGCC AATTAGACTAGTTGTAGTCGTAGTTTTTAGGGCTTGTGTGCTAGTGTGCA ATTTGGTAGGCTTAATTATGTAGGAAAAATACTCTGTTGTACTATATACA CTTTAAGTCGCTTGGTTGAAATGTTAAATGTTAATTGATTCCGATCGCAA TGTTTGCTTAAGCTAGACCTATTCTGTTGATTCTTGTGAACAAAAAAAAA AATTACAGCTTACGCTTAGCTCTTAAGTTTTTATTATTACAAAACATACG ACTAATTGCGTCGAGTGCTAAGTACTTAAGCTGACTCGCGTTATCTGTAC AATTCGATGGAGGTAATAAAAACTGTATTATTTACTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9424689..9425352 | 2237..1574 | 3320 | 100 | Minus |
chr2R | 21145070 | chr2R | 9425499..9426156 | 1575..918 | 3290 | 100 | Minus |
chr2R | 21145070 | chr2R | 9429461..9429865 | 540..136 | 2025 | 100 | Minus |
chr2R | 21145070 | chr2R | 9426273..9426650 | 917..540 | 1890 | 100 | Minus |
chr2R | 21145070 | chr2R | 9436255..9436525 | 1575..1305 | 770 | 85.6 | Minus |
chr2R | 21145070 | chr2R | 9432609..9432743 | 136..2 | 675 | 100 | Minus |
chr2R | 21145070 | chr2R | 9436607..9436837 | 1148..918 | 585 | 83.5 | Minus |
chr2R | 21145070 | chr2R | 9436969..9437217 | 785..540 | 580 | 83.1 | Minus |
chr2R | 21145070 | chr2R | 9435945..9436197 | 1826..1574 | 545 | 81 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13537385..13538051 | 2240..1574 | 3335 | 100 | Minus |
2R | 25286936 | 2R | 13538198..13538855 | 1575..918 | 3290 | 100 | Minus |
2R | 25286936 | 2R | 13542160..13542564 | 540..136 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 13538972..13539349 | 917..540 | 1890 | 100 | Minus |
2R | 25286936 | 2R | 13548954..13549224 | 1575..1305 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13545308..13545442 | 136..2 | 675 | 100 | Minus |
2R | 25286936 | 2R | 13549306..13549536 | 1148..918 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13549668..13549916 | 785..540 | 580 | 83.1 | Minus |
2R | 25286936 | 2R | 13548644..13548896 | 1826..1574 | 545 | 81 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13538584..13539250 | 2240..1574 | 3335 | 100 | Minus |
2R | 25260384 | 2R | 13539397..13540054 | 1575..918 | 3290 | 100 | Minus |
2R | 25260384 | 2R | 13543359..13543763 | 540..136 | 2025 | 100 | Minus |
2R | 25260384 | 2R | 13540171..13540548 | 917..540 | 1890 | 100 | Minus |
2R | 25260384 | 2R | 13550153..13550423 | 1575..1305 | 770 | 85.6 | Minus |
2R | 25260384 | 2R | 13546507..13546641 | 136..2 | 675 | 100 | Minus |
2R | 25260384 | 2R | 13550505..13550735 | 1148..918 | 585 | 83.5 | Minus |
2R | 25260384 | 2R | 13549843..13550095 | 1826..1574 | 545 | 81 | Minus |
2R | 25260384 | 2R | 13550959..13551115 | 696..540 | 485 | 87.2 | Minus |
2R | 25260384 | 2R | 13550867..13550944 | 785..708 | 210 | 84.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9424689..9425350 | 1576..2237 | 100 | <- | Minus |
chr2R | 9425499..9426156 | 918..1575 | 100 | <- | Minus |
chr2R | 9426273..9426650 | 540..917 | 100 | <- | Minus |
chr2R | 9429462..9429864 | 137..539 | 100 | <- | Minus |
chr2R | 9432609..9432743 | 1..136 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..1647 | 217..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..1647 | 217..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..1647 | 217..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..1647 | 217..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..1647 | 217..1863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..2236 | 2..2237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..2236 | 2..2237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 7..2243 | 1..2237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 1..2236 | 2..2237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6145-RC | 7..2243 | 1..2237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13537388..13538049 | 1576..2237 | 100 | <- | Minus |
2R | 13538198..13538855 | 918..1575 | 100 | <- | Minus |
2R | 13538972..13539349 | 540..917 | 100 | <- | Minus |
2R | 13542161..13542563 | 137..539 | 100 | <- | Minus |
2R | 13545308..13545442 | 1..136 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13537388..13538049 | 1576..2237 | 100 | <- | Minus |
2R | 13538198..13538855 | 918..1575 | 100 | <- | Minus |
2R | 13538972..13539349 | 540..917 | 100 | <- | Minus |
2R | 13542161..13542563 | 137..539 | 100 | <- | Minus |
2R | 13545308..13545442 | 1..136 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13537388..13538049 | 1576..2237 | 100 | <- | Minus |
2R | 13538198..13538855 | 918..1575 | 100 | <- | Minus |
2R | 13538972..13539349 | 540..917 | 100 | <- | Minus |
2R | 13542161..13542563 | 137..539 | 100 | <- | Minus |
2R | 13545308..13545442 | 1..136 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9424893..9425554 | 1576..2237 | 100 | <- | Minus |
arm_2R | 9425703..9426360 | 918..1575 | 100 | <- | Minus |
arm_2R | 9426477..9426854 | 540..917 | 100 | <- | Minus |
arm_2R | 9429666..9430068 | 137..539 | 100 | <- | Minus |
arm_2R | 9432813..9432947 | 1..136 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13546507..13546641 | 1..136 | 99 | Minus | |
2R | 13538587..13539248 | 1576..2237 | 100 | <- | Minus |
2R | 13539397..13540054 | 918..1575 | 100 | <- | Minus |
2R | 13540171..13540548 | 540..917 | 100 | <- | Minus |
2R | 13543360..13543762 | 137..539 | 100 | <- | Minus |
Translation from 216 to 1862
> RH58004.hyp MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6145-PC | 548 | CG6145-PC | 1..548 | 1..548 | 2860 | 100 | Plus |
CG6145-PA | 520 | CG6145-PA | 79..520 | 107..548 | 2293 | 99.8 | Plus |
CG6145-PF | 484 | CG6145-PF | 35..484 | 100..548 | 2292 | 98.9 | Plus |
CG6145-PE | 483 | CG6145-PE | 8..483 | 64..548 | 2292 | 92.6 | Plus |
CG6145-PB | 420 | CG6145-PB | 1..420 | 129..548 | 2173 | 100 | Plus |
Translation from 216 to 1862
> RH58004.pep MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11178-PA | 544 | GF11178-PA | 1..544 | 1..548 | 2421 | 87.2 | Plus |
Dana\GF11176-PA | 543 | GF11176-PA | 1..543 | 1..548 | 1664 | 62.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22483-PA | 549 | GG22483-PA | 1..549 | 1..548 | 2828 | 96.4 | Plus |
Dere\GG22480-PA | 643 | GG22480-PA | 121..642 | 4..547 | 1639 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22633-PA | 564 | GH22633-PA | 1..564 | 1..548 | 2168 | 78.1 | Plus |
Dgri\GH22631-PA | 442 | GH22631-PA | 44..442 | 104..548 | 1697 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6145-PC | 548 | CG6145-PC | 1..548 | 1..548 | 2860 | 100 | Plus |
CG6145-PA | 520 | CG6145-PA | 79..520 | 107..548 | 2293 | 99.8 | Plus |
CG6145-PF | 484 | CG6145-PF | 35..484 | 100..548 | 2292 | 98.9 | Plus |
CG6145-PE | 483 | CG6145-PE | 8..483 | 64..548 | 2292 | 92.6 | Plus |
CG6145-PB | 420 | CG6145-PB | 1..420 | 129..548 | 2173 | 100 | Plus |
CG33156-PE | 490 | CG33156-PE | 3..489 | 4..547 | 1717 | 65.9 | Plus |
CG33156-PF | 450 | CG33156-PF | 23..449 | 68..547 | 1634 | 70.3 | Plus |
CG33156-PA | 454 | CG33156-PA | 20..453 | 66..547 | 1631 | 69.4 | Plus |
CG33156-PB | 453 | CG33156-PB | 59..452 | 109..547 | 1617 | 74.3 | Plus |
CG33156-PC | 375 | CG33156-PC | 1..374 | 129..547 | 1519 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21329-PA | 560 | GI21329-PA | 1..560 | 1..548 | 2152 | 77.9 | Plus |
Dmoj\GI21327-PA | 412 | GI21327-PA | 3..412 | 104..548 | 1642 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17067-PA | 557 | GL17067-PA | 1..550 | 1..548 | 2486 | 87.7 | Plus |
Dper\GL17065-PA | 546 | GL17065-PA | 54..545 | 1..547 | 1782 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24350-PA | 557 | GA24350-PA | 1..550 | 1..548 | 2473 | 87.3 | Plus |
Dpse\GA17329-PA | 605 | GA17329-PA | 214..604 | 109..547 | 1641 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20270-PA | 548 | GM20270-PA | 1..548 | 1..548 | 2876 | 97.6 | Plus |
Dsec\GM20268-PA | 523 | GM20268-PA | 3..523 | 4..548 | 1636 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25753-PA | 519 | GD25753-PA | 78..519 | 107..548 | 2325 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19674-PA | 557 | GJ19674-PA | 1..557 | 1..548 | 2182 | 78.3 | Plus |
Dvir\GJ19672-PA | 448 | GJ19672-PA | 44..448 | 95..548 | 1684 | 73 | Plus |