Clone RH58440 Report

Search the DGRC for RH58440

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:584
Well:40
Vector:pFlc-1
Associated Gene/TranscriptCG4660-RA
Protein status:RH58440.pep: gold
Preliminary Size:1169
Sequenced Size:1289

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4660 2002-01-01 Sim4 clustering to Release 2
CG4660 2002-06-10 Blastp of sequenced clone
CG4660 2003-01-01 Sim4 clustering to Release 3
CG4660 2008-04-29 Release 5.5 accounting
CG4660 2008-08-15 Release 5.9 accounting
CG4660 2008-12-18 5.12 accounting

Clone Sequence Records

RH58440.complete Sequence

1289 bp (1289 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121707

> RH58440.complete
CAGAGTCTCAGTGCGCTGTTGTCGCTGCGTGCCCCCCAGCCCCACGGACC
ACGCCCCCCAGCCAGTCCGCCCACCAAACTGTCAGCCTGCCAATCTGCCA
GTCCGCCGACCTGCCATAGGAATGGAGCAGCTGTGCTACCTGGCGCTGAG
CGTCCTTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACT
TCCTGCGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGA
TGCCACATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGA
TGTGGACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGC
TGGACTTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACC
ATCACGGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTA
CCGTCGCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTA
TTTACTGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCA
TCGGACAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGA
CGTGTCCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCA
ACGGATTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCA
GCTGGTGGCATAAGCAATCCCGCGATGGACACTTCGCTGGCGGAGAACGG
ACATGGGACGACGAGCGGTGGAGCGGCGGGCACGGGTGCCACGGCCAGCG
CGACCGCGGCGCACTGCTTGAAGCTGAAGCCCTCGCTGCCGCCGGAGTTG
GCCAAGTGGATCGAGTACAACGATATGTCGAGCAAGAATCTACGCAGTGG
CTGCTGACTGGAATCGTTGGAGTCGCCGGAAGCGGATGCGCAACCGGAAA
CGGAAACGCCCATTATTACATGTTTTTTTTTTCTTGTCTCGCGTGCTTGT
GTGTGTGAGTGTGCGTGCTAAAGTGTGCTAATGTTTAATGTCTAAGTGTG
CACGTGAAATGTTTGTATTGTAAGCTATGTAAGGGTCTGTAAAACAAATA
AGAAAAGCCCGCCCTCTTTTGGCCTTAACTAATGTATTGTATAATTACCC
AGAGATCAGACACGCCCCCCCGAATAATGAACTAGAAATACAAACAAAAC
TCCTTGGTAGTCCACAGTGTGTAAGCTATGATGTACAATGATTGTTTAGT
AAATGAACAAACCTAATGTGAATAAAAAAAAAAAAAAAA

RH58440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-RA 1304 CG4660-RA 35..1304 4..1273 6335 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5970944..5971718 1273..496 3675 98.7 Minus
chrX 22417052 chrX 5972558..5972812 283..29 1230 98.8 Minus
chrX 22417052 chrX 5971833..5972048 496..281 1050 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6078706..6079485 1275..496 3900 100 Minus
X 23542271 X 6080335..6080589 283..29 1260 99.6 Minus
X 23542271 X 6079611..6079826 496..281 1080 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6086804..6087583 1275..496 3900 100 Minus
X 23527363 X 6088433..6088687 283..29 1260 99.6 Minus
X 23527363 X 6087709..6087924 496..281 1080 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:35:15 has no hits.

RH58440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:36:11 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5971833..5972047 282..496 99 <- Minus
chrX 5970944..5971717 497..1273 98 <- Minus
chrX 5972560..5972722 119..281 99 == Minus
chrX 5972784..5972811 30..57 100 <- Minus
chrX 5973536..5973562 1..29 93   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:41 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 122..907 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:05 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 122..907 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:16:22 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 122..907 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:19 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 122..907 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:47 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 122..907 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:12 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..1267 4..1270 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:05 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..1267 4..1270 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:22 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 5..1275 1..1273 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:19 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..1267 4..1270 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:47 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 5..1275 1..1273 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:11 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
X 6079611..6079825 282..496 100 <- Minus
X 6080337..6080588 30..281 99 <- Minus
X 6081342..6081368 1..29 93   Minus
X 6078708..6079484 497..1273 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:11 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
X 6079611..6079825 282..496 100 <- Minus
X 6080337..6080588 30..281 99 <- Minus
X 6081342..6081368 1..29 93   Minus
X 6078708..6079484 497..1273 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:11 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
X 6079611..6079825 282..496 100 <- Minus
X 6080337..6080588 30..281 99 <- Minus
X 6081342..6081368 1..29 93   Minus
X 6078708..6079484 497..1273 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:22 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5975375..5975401 1..29 93   Minus
arm_X 5972741..5973517 497..1273 100 <- Minus
arm_X 5973644..5973858 282..496 100 <- Minus
arm_X 5974370..5974621 30..281 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:14:01 Download gff for RH58440.complete
Subject Subject Range Query Range Percent Splice Strand
X 6086806..6087582 497..1273 100 <- Minus
X 6087709..6087923 282..496 100 <- Minus
X 6088435..6088686 30..281 99 <- Minus
X 6089440..6089466 1..29 93   Minus

RH58440.hyp Sequence

Translation from 4 to 906

> RH58440.hyp
VSVRCCRCVPPSPTDHAPQPVRPPNCQPANLPVRRPAIGMEQLCYLALSV
LLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTTTVNGLCLTNDV
DTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGSVFQGAATIRYR
RFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHCIAICRQRVIDV
SMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNPAMDTSLAENGH
GTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYNDMSSKNLRSGC
*

RH58440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-PA 261 CG4660-PA 1..261 40..300 1362 100 Plus
CG4666-PB 193 CG4666-PB 1..159 48..206 356 39.6 Plus
CG4666-PA 193 CG4666-PA 1..159 48..206 356 39.6 Plus

RH58440.pep Sequence

Translation from 121 to 906

> RH58440.pep
MEQLCYLALSVLLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTT
TVNGLCLTNDVDTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGS
VFQGAATIRYRRFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHC
IAICRQRVIDVSMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNP
AMDTSLAENGHGTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYN
DMSSKNLRSGC*

RH58440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20314-PA 236 GF20314-PA 1..180 1..200 825 79.5 Plus
Dana\GF20315-PA 193 GF20315-PA 1..148 9..156 351 39.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17698-PA 261 GG17698-PA 1..261 1..261 1370 97.7 Plus
Dere\GG17699-PA 193 GG17699-PA 1..167 9..176 356 38.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24110-PA 283 GH24110-PA 1..283 1..261 928 68.6 Plus
Dgri\GH24111-PA 193 GH24111-PA 15..148 23..156 348 44 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-PA 261 CG4660-PA 1..261 1..261 1362 100 Plus
CG4666-PB 193 CG4666-PB 1..159 9..167 356 39.6 Plus
CG4666-PA 193 CG4666-PA 1..159 9..167 356 39.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16369-PA 258 GI16369-PA 1..258 1..261 985 72.8 Plus
Dmoj\GI16370-PA 193 GI16370-PA 15..148 23..156 345 44 Plus
Dmoj\GI17389-PA 207 GI17389-PA 1..160 9..168 317 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14955-PA 268 GL14955-PA 1..268 1..261 1102 78.5 Plus
Dper\GL14956-PA 134 GL14956-PA 1..101 68..168 238 40.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18337-PA 268 GA18337-PA 1..268 1..261 1102 78.5 Plus
Dpse\GA22284-PA 193 GA22284-PA 1..160 9..168 343 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12596-PA 261 GM12596-PA 1..261 1..261 1369 97.7 Plus
Dsec\GM12597-PA 193 GM12597-PA 1..167 9..176 363 38.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16215-PA 261 GD16215-PA 1..261 1..261 1374 97.7 Plus
Dsim\GD16216-PA 193 GD16216-PA 1..167 9..176 362 38.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16741-PA 264 GJ16741-PA 1..264 1..261 947 73.2 Plus
Dvir\GJ16742-PA 193 GJ16742-PA 15..159 23..167 351 43.2 Plus
Dvir\GJ18066-PA 203 GJ18066-PA 21..158 23..160 341 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17423-PA 263 GK17423-PA 1..263 1..261 1069 77.4 Plus
Dwil\GK17434-PA 193 GK17434-PA 15..161 23..169 342 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16485-PA 261 GE16485-PA 1..261 1..261 1247 96.2 Plus
Dyak\GE16486-PA 193 GE16486-PA 1..167 9..176 359 38.7 Plus