BDGP Sequence Production Resources |
Search the DGRC for RH58440
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 584 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4660-RA |
Protein status: | RH58440.pep: gold |
Preliminary Size: | 1169 |
Sequenced Size: | 1289 |
Gene | Date | Evidence |
---|---|---|
CG4660 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4660 | 2002-06-10 | Blastp of sequenced clone |
CG4660 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4660 | 2008-04-29 | Release 5.5 accounting |
CG4660 | 2008-08-15 | Release 5.9 accounting |
CG4660 | 2008-12-18 | 5.12 accounting |
1289 bp (1289 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121707
> RH58440.complete CAGAGTCTCAGTGCGCTGTTGTCGCTGCGTGCCCCCCAGCCCCACGGACC ACGCCCCCCAGCCAGTCCGCCCACCAAACTGTCAGCCTGCCAATCTGCCA GTCCGCCGACCTGCCATAGGAATGGAGCAGCTGTGCTACCTGGCGCTGAG CGTCCTTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACT TCCTGCGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGA TGCCACATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGA TGTGGACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGC TGGACTTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACC ATCACGGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTA CCGTCGCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTA TTTACTGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCA TCGGACAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGA CGTGTCCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCA ACGGATTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCA GCTGGTGGCATAAGCAATCCCGCGATGGACACTTCGCTGGCGGAGAACGG ACATGGGACGACGAGCGGTGGAGCGGCGGGCACGGGTGCCACGGCCAGCG CGACCGCGGCGCACTGCTTGAAGCTGAAGCCCTCGCTGCCGCCGGAGTTG GCCAAGTGGATCGAGTACAACGATATGTCGAGCAAGAATCTACGCAGTGG CTGCTGACTGGAATCGTTGGAGTCGCCGGAAGCGGATGCGCAACCGGAAA CGGAAACGCCCATTATTACATGTTTTTTTTTTCTTGTCTCGCGTGCTTGT GTGTGTGAGTGTGCGTGCTAAAGTGTGCTAATGTTTAATGTCTAAGTGTG CACGTGAAATGTTTGTATTGTAAGCTATGTAAGGGTCTGTAAAACAAATA AGAAAAGCCCGCCCTCTTTTGGCCTTAACTAATGTATTGTATAATTACCC AGAGATCAGACACGCCCCCCCGAATAATGAACTAGAAATACAAACAAAAC TCCTTGGTAGTCCACAGTGTGTAAGCTATGATGTACAATGATTGTTTAGT AAATGAACAAACCTAATGTGAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4660-RA | 1304 | CG4660-RA | 35..1304 | 4..1273 | 6335 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5970944..5971718 | 1273..496 | 3675 | 98.7 | Minus |
chrX | 22417052 | chrX | 5972558..5972812 | 283..29 | 1230 | 98.8 | Minus |
chrX | 22417052 | chrX | 5971833..5972048 | 496..281 | 1050 | 99.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5971833..5972047 | 282..496 | 99 | <- | Minus |
chrX | 5970944..5971717 | 497..1273 | 98 | <- | Minus |
chrX | 5972560..5972722 | 119..281 | 99 | == | Minus |
chrX | 5972784..5972811 | 30..57 | 100 | <- | Minus |
chrX | 5973536..5973562 | 1..29 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..786 | 122..907 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..786 | 122..907 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..786 | 122..907 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..786 | 122..907 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..786 | 122..907 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..1267 | 4..1270 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..1267 | 4..1270 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 5..1275 | 1..1273 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 1..1267 | 4..1270 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4660-RA | 5..1275 | 1..1273 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6079611..6079825 | 282..496 | 100 | <- | Minus |
X | 6080337..6080588 | 30..281 | 99 | <- | Minus |
X | 6081342..6081368 | 1..29 | 93 | Minus | |
X | 6078708..6079484 | 497..1273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6079611..6079825 | 282..496 | 100 | <- | Minus |
X | 6080337..6080588 | 30..281 | 99 | <- | Minus |
X | 6081342..6081368 | 1..29 | 93 | Minus | |
X | 6078708..6079484 | 497..1273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6079611..6079825 | 282..496 | 100 | <- | Minus |
X | 6080337..6080588 | 30..281 | 99 | <- | Minus |
X | 6081342..6081368 | 1..29 | 93 | Minus | |
X | 6078708..6079484 | 497..1273 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5975375..5975401 | 1..29 | 93 | Minus | |
arm_X | 5972741..5973517 | 497..1273 | 100 | <- | Minus |
arm_X | 5973644..5973858 | 282..496 | 100 | <- | Minus |
arm_X | 5974370..5974621 | 30..281 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6086806..6087582 | 497..1273 | 100 | <- | Minus |
X | 6087709..6087923 | 282..496 | 100 | <- | Minus |
X | 6088435..6088686 | 30..281 | 99 | <- | Minus |
X | 6089440..6089466 | 1..29 | 93 | Minus |
Translation from 4 to 906
> RH58440.hyp VSVRCCRCVPPSPTDHAPQPVRPPNCQPANLPVRRPAIGMEQLCYLALSV LLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTTTVNGLCLTNDV DTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGSVFQGAATIRYR RFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHCIAICRQRVIDV SMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNPAMDTSLAENGH GTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYNDMSSKNLRSGC *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4660-PA | 261 | CG4660-PA | 1..261 | 40..300 | 1362 | 100 | Plus |
CG4666-PB | 193 | CG4666-PB | 1..159 | 48..206 | 356 | 39.6 | Plus |
CG4666-PA | 193 | CG4666-PA | 1..159 | 48..206 | 356 | 39.6 | Plus |
Translation from 121 to 906
> RH58440.pep MEQLCYLALSVLLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTT TVNGLCLTNDVDTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGS VFQGAATIRYRRFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHC IAICRQRVIDVSMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNP AMDTSLAENGHGTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYN DMSSKNLRSGC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20314-PA | 236 | GF20314-PA | 1..180 | 1..200 | 825 | 79.5 | Plus |
Dana\GF20315-PA | 193 | GF20315-PA | 1..148 | 9..156 | 351 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17698-PA | 261 | GG17698-PA | 1..261 | 1..261 | 1370 | 97.7 | Plus |
Dere\GG17699-PA | 193 | GG17699-PA | 1..167 | 9..176 | 356 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24110-PA | 283 | GH24110-PA | 1..283 | 1..261 | 928 | 68.6 | Plus |
Dgri\GH24111-PA | 193 | GH24111-PA | 15..148 | 23..156 | 348 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4660-PA | 261 | CG4660-PA | 1..261 | 1..261 | 1362 | 100 | Plus |
CG4666-PB | 193 | CG4666-PB | 1..159 | 9..167 | 356 | 39.6 | Plus |
CG4666-PA | 193 | CG4666-PA | 1..159 | 9..167 | 356 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16369-PA | 258 | GI16369-PA | 1..258 | 1..261 | 985 | 72.8 | Plus |
Dmoj\GI16370-PA | 193 | GI16370-PA | 15..148 | 23..156 | 345 | 44 | Plus |
Dmoj\GI17389-PA | 207 | GI17389-PA | 1..160 | 9..168 | 317 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14955-PA | 268 | GL14955-PA | 1..268 | 1..261 | 1102 | 78.5 | Plus |
Dper\GL14956-PA | 134 | GL14956-PA | 1..101 | 68..168 | 238 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18337-PA | 268 | GA18337-PA | 1..268 | 1..261 | 1102 | 78.5 | Plus |
Dpse\GA22284-PA | 193 | GA22284-PA | 1..160 | 9..168 | 343 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12596-PA | 261 | GM12596-PA | 1..261 | 1..261 | 1369 | 97.7 | Plus |
Dsec\GM12597-PA | 193 | GM12597-PA | 1..167 | 9..176 | 363 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16215-PA | 261 | GD16215-PA | 1..261 | 1..261 | 1374 | 97.7 | Plus |
Dsim\GD16216-PA | 193 | GD16216-PA | 1..167 | 9..176 | 362 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16741-PA | 264 | GJ16741-PA | 1..264 | 1..261 | 947 | 73.2 | Plus |
Dvir\GJ16742-PA | 193 | GJ16742-PA | 15..159 | 23..167 | 351 | 43.2 | Plus |
Dvir\GJ18066-PA | 203 | GJ18066-PA | 21..158 | 23..160 | 341 | 43.5 | Plus |