Clone RH58587 Report

Search the DGRC for RH58587

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:585
Well:87
Vector:pFlc-1
Associated Gene/TranscriptCG12374-RA
Protein status:RH58587.pep: gold
Preliminary Size:1353
Sequenced Size:1480

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12374 2001-12-17 Blastp of sequenced clone
CG12374 2002-01-01 Sim4 clustering to Release 2
CG12374 2008-04-29 Release 5.5 accounting
CG12374 2008-08-15 Release 5.9 accounting
CG12374 2008-12-18 5.12 accounting

Clone Sequence Records

RH58587.complete Sequence

1480 bp (1480 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071750

> RH58587.complete
GACAGTGAACGCTGTAACGTTCAAGACACCAAACCTCCGAAATGAAACTA
CCAATCCTTCTGATAACCCTTGTGGCCATGGTGGCGGCCAAGTCCGCACC
TGGTCGCATGGCCGCCCGGTACGACCACTTCCGTATCTATCAGCTGACCA
TTGAGACGAACTTGCAGATGGAGGAGCTTAAGAAGATTCACGAACACATC
TCTGTGCACTTCCTCAACGAACTGGGTGCTGTTGGAAACAAATACAATGT
GATCGTTGGTCCCTTGTTCCACAGAGCCCTCGAGAAGACCCTTAAATTCC
TCGAAATTGTTTACGAAGTGATTGTCGACGATCTGCAGAAATTGATAGAT
GAATCCTCTGTTGGCGACGATTCCCAGATGGAATGGGAGACCTACCACAC
TCTGGACACCATTTACGATTGGATCGATCAGGAGTGTGCTGCCCACGATT
TCCTGGAGTGCAAGGTGATTGGACAGTCCTACGAGGGTCGCGACATCAAG
AGCATTAGGTTGTCGAAGCGTTCGGGCAACAAGGCCATCTTCCTGGAGGG
CAACATCCATGCCATGGAGTGGATCTCGTCGGCCACCGTCACCTTCCTGT
TGAACCAGTTGATCAACTCCGAGGATCCGGAAATGCAGCGACTGAGCGAA
GAGTACGATTGGATTGTGGTGCCCATGGTGAACCCGGATGGCTTCGTTTA
CACCCACGAGGTGGAGCGTTTGTGGCGCAAGAACCGTCGTCCCAACGGAT
ACCGCAACGAAAGTGGAGATTGCTACGGCATTGACATGAACCGCAACTTT
GACTACCACTGGGGAGGTGCCGGCTGGAACATCGATGAGCCCTGCGATCA
CTGGTTCGGTGGTGAGGAGCCCAACACCGAGGTGGAGATCATCTCGCTGC
AGAACTTTGTGAGCTCCTTCGAGGATGGCTACATCCGATCGTACATGGCC
TACCATGCCTACGGACAGTATGTCCTCCTGCCCTACGGACACTCCAACAC
CGAGTTCCCGCCCAACTACGAGCAGATGAAGCGCATTGCCGCTGCATTCT
CCGATGCTGCCGCTGATGTCTATGGTTCCACCTTCACCTATGGAGCTAGT
GGTCTGCTTAACTATGTCGTTTCGGGAGCTGCCAAGGATTGGGCCTATGG
CGTAAAGAAAATCCCATTCACCTGCACCGTGGAACTGCGTGACAAGGGCA
CCTTCGGATTCTTCCTGCCCTCCAACCAGATCACCGAGGTGGGTCTCGAG
GTCACCGCTGGTCTTAAGGCTCTGGTCAACAAGGCTGCCGAGGAGGGCAT
TTTTGACTAGAGCTTGGTATGTACCAACTTGGGCGCAGATGCTGTGAAAA
ATAAATAAATCATTTTATAATTATAATGTGAACATTCAATTTTGATGTAA
AATGATTTTATTTATAAACAGTGCAGATTAGCTGAGTGTACGTTTAATAA
AGAAAGAAGTTGCCGAAAAAAAAAAAAAAA

RH58587.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-RA 1784 CG12374-RA 170..1644 2..1476 7330 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8649787..8650264 341..818 2375 99.8 Plus
chr2R 21145070 chr2R 8650676..8651027 1114..1465 1760 100 Plus
chr2R 21145070 chr2R 8650318..8650616 815..1113 1495 100 Plus
chr2R 21145070 chr2R 8649315..8649518 2..205 1005 99.5 Plus
chr2R 21145070 chr2R 8649588..8649724 204..340 685 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12762585..12763062 341..818 2390 100 Plus
2R 25286936 2R 12763474..12763836 1114..1476 1770 99.2 Plus
2R 25286936 2R 12763116..12763414 815..1113 1495 100 Plus
2R 25286936 2R 12762113..12762316 2..205 1020 100 Plus
2R 25286936 2R 12762386..12762522 204..340 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12763784..12764261 341..818 2390 100 Plus
2R 25260384 2R 12764673..12765035 1114..1476 1770 99.1 Plus
2R 25260384 2R 12764315..12764613 815..1113 1495 100 Plus
2R 25260384 2R 12763312..12763515 2..205 1020 100 Plus
2R 25260384 2R 12763585..12763721 204..340 685 100 Plus
Blast to na_te.dros performed 2019-03-15 22:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 10157..10227 1430..1359 114 63.9 Minus

RH58587.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:08 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8649588..8649724 204..340 100 -> Plus
chr2R 8650676..8651027 1114..1465 91   Plus
chr2R 8649314..8649516 1..203 99 -> Plus
chr2R 8649787..8650262 341..816 99 -> Plus
chr2R 8650320..8650616 817..1113 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:44 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1269 42..1310 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:53 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1269 42..1310 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:51 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1269 42..1310 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:38 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1269 42..1310 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:22 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1269 42..1310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:13 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 2..1465 2..1465 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:53 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 2..1465 2..1465 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:51 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1464 2..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:39 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 2..1465 2..1465 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:22 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 1..1464 2..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:08 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12762112..12762314 1..203 99 -> Plus
2R 12762386..12762522 204..340 100 -> Plus
2R 12762585..12763060 341..816 100 -> Plus
2R 12763118..12763414 817..1113 100 -> Plus
2R 12763474..12763825 1114..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:08 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12762112..12762314 1..203 99 -> Plus
2R 12762386..12762522 204..340 100 -> Plus
2R 12762585..12763060 341..816 100 -> Plus
2R 12763118..12763414 817..1113 100 -> Plus
2R 12763474..12763825 1114..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:08 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12762112..12762314 1..203 99 -> Plus
2R 12762386..12762522 204..340 100 -> Plus
2R 12762585..12763060 341..816 100 -> Plus
2R 12763118..12763414 817..1113 100 -> Plus
2R 12763474..12763825 1114..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:51 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8649617..8649819 1..203 99 -> Plus
arm_2R 8649891..8650027 204..340 100 -> Plus
arm_2R 8650090..8650565 341..816 100 -> Plus
arm_2R 8650623..8650919 817..1113 100 -> Plus
arm_2R 8650979..8651330 1114..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:43 Download gff for RH58587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12763784..12764259 341..816 100 -> Plus
2R 12764317..12764613 817..1113 100 -> Plus
2R 12764673..12765024 1114..1465 100   Plus
2R 12763311..12763513 1..203 99 -> Plus
2R 12763585..12763721 204..340 100 -> Plus

RH58587.pep Sequence

Translation from 41 to 1309

> RH58587.pep
MKLPILLITLVAMVAAKSAPGRMAARYDHFRIYQLTIETNLQMEELKKIH
EHISVHFLNELGAVGNKYNVIVGPLFHRALEKTLKFLEIVYEVIVDDLQK
LIDESSVGDDSQMEWETYHTLDTIYDWIDQECAAHDFLECKVIGQSYEGR
DIKSIRLSKRSGNKAIFLEGNIHAMEWISSATVTFLLNQLINSEDPEMQR
LSEEYDWIVVPMVNPDGFVYTHEVERLWRKNRRPNGYRNESGDCYGIDMN
RNFDYHWGGAGWNIDEPCDHWFGGEEPNTEVEIISLQNFVSSFEDGYIRS
YMAYHAYGQYVLLPYGHSNTEFPPNYEQMKRIAAAFSDAAADVYGSTFTY
GASGLLNYVVSGAAKDWAYGVKKIPFTCTVELRDKGTFGFFLPSNQITEV
GLEVTAGLKALVNKAAEEGIFD*

RH58587.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12918-PA 424 GF12918-PA 1..424 1..422 1916 84.7 Plus
Dana\GF23551-PA 416 GF23551-PA 17..416 21..421 803 39.4 Plus
Dana\GF23552-PA 416 GF23552-PA 17..416 21..421 800 39.4 Plus
Dana\GF14014-PA 428 GF14014-PA 1..421 1..419 766 37.4 Plus
Dana\GF14015-PA 351 GF14015-PA 1..351 71..421 726 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20336-PA 422 GG20336-PA 1..422 1..422 2155 96 Plus
Dere\GG14391-PA 416 GG14391-PA 21..416 25..421 793 39 Plus
Dere\GG23519-PA 422 GG23519-PA 1..420 1..419 774 37.4 Plus
Dere\GG23518-PA 429 GG23518-PA 28..421 26..419 719 37.4 Plus
Dere\GG10693-PA 417 GG10693-PA 17..416 25..421 613 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21762-PA 423 GH21762-PA 24..423 23..422 1708 75.5 Plus
Dgri\GH15366-PA 440 GH15366-PA 19..435 1..422 837 39.8 Plus
Dgri\GH10072-PA 421 GH10072-PA 1..419 1..419 760 36.4 Plus
Dgri\GH10071-PA 430 GH10071-PA 32..422 26..419 681 37.5 Plus
Dgri\GH25145-PA 426 GH25145-PA 27..426 26..422 608 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-PA 422 CG12374-PA 1..422 1..422 2250 100 Plus
CG14820-PA 416 CG14820-PA 22..412 26..417 803 39.7 Plus
CG18585-PB 422 CG18585-PB 1..420 1..419 790 38.6 Plus
CG18585-PA 422 CG18585-PA 1..420 1..419 790 38.6 Plus
CG7025-PA 429 CG7025-PA 6..421 3..419 741 36.8 Plus
CG2915-PA 453 CG2915-PA 53..452 25..421 616 33.8 Plus
CG2915-PB 453 CG2915-PB 53..452 25..421 616 33.8 Plus
CG17633-PA 430 CG17633-PA 7..430 6..422 612 33.9 Plus
CG4017-PA 424 CG4017-PA 1..417 1..417 566 31.4 Plus
CG4408-PB 467 CG4408-PB 59..466 17..421 550 30.8 Plus
CG4408-PA 479 CG4408-PA 71..478 17..421 550 30.8 Plus
CG3108-PA 1132 CG3108-PA 722..1094 26..397 540 30.3 Plus
CG8560-PB 418 CG8560-PB 1..417 7..418 508 28.6 Plus
CG8560-PA 418 CG8560-PA 1..417 7..418 508 28.6 Plus
CG8562-PA 424 CG8562-PA 23..422 27..417 503 30.2 Plus
CG18417-PA 427 CG18417-PA 1..423 3..418 482 30.1 Plus
CG3097-PA 445 CG3097-PA 11..427 5..403 474 27.2 Plus
CG32379-PB 344 CG32379-PB 8..334 91..411 451 30.5 Plus
CG8563-PB 440 CG8563-PB 166..429 137..407 375 31.2 Plus
CG8563-PA 440 CG8563-PA 166..429 137..407 375 31.2 Plus
CG42264-PA 634 CG42264-PA 214..632 21..414 374 27 Plus
CG8945-PC 1430 CG8945-PC 981..1412 27..397 363 26.7 Plus
CG42264-PB 521 CG42264-PB 158..519 85..414 359 28 Plus
CG8539-PB 385 CG8539-PB 33..339 113..418 327 26.3 Plus
CG8539-PA 385 CG8539-PA 33..339 113..418 327 26.3 Plus
CG8564-PA 504 CG8564-PA 121..362 164..415 293 28.5 Plus
CG8564-PC 520 CG8564-PC 137..378 164..415 293 28.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19308-PA 421 GI19308-PA 4..421 5..422 1682 73.2 Plus
Dmoj\GI12970-PA 416 GI12970-PA 6..410 5..415 818 38.2 Plus
Dmoj\GI12969-PA 416 GI12969-PA 21..416 25..421 816 40.6 Plus
Dmoj\GI12968-PA 416 GI12968-PA 21..412 25..417 802 40.1 Plus
Dmoj\GI16514-PA 434 GI16514-PA 19..426 12..422 764 37.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17014-PA 425 GL17014-PA 21..425 18..422 1880 84 Plus
Dper\GL13278-PA 358 GL13278-PA 28..354 90..417 722 43.2 Plus
Dper\GL18860-PA 429 GL18860-PA 29..424 26..422 705 36 Plus
Dper\GL10609-PA 428 GL10609-PA 14..428 11..422 606 32.4 Plus
Dper\GL18934-PA 425 GL18934-PA 25..425 25..422 599 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11590-PA 425 GA11590-PA 21..425 18..422 1879 84 Plus
Dpse\GA13272-PA 416 GA13272-PA 6..412 5..417 826 39.4 Plus
Dpse\GA15002-PA 423 GA15002-PA 10..421 9..419 757 37.9 Plus
Dpse\GA20041-PA 429 GA20041-PA 8..424 5..422 715 35.1 Plus
Dpse\GA15515-PA 428 GA15515-PA 14..428 11..422 611 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21424-PA 410 GM21424-PA 1..410 1..422 2126 94.6 Plus
Dsec\GM14804-PA 416 GM14804-PA 21..416 25..421 814 39.5 Plus
Dsec\GM13467-PA 422 GM13467-PA 1..420 1..419 781 37.6 Plus
Dsec\GM13458-PA 429 GM13458-PA 4..421 1..419 730 36.4 Plus
Dsec\GM20741-PA 429 GM20741-PA 29..428 25..421 609 33.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10919-PA 422 GD10919-PA 1..422 1..422 2264 99.1 Plus
Dsim\GD22482-PA 422 GD22482-PA 1..420 1..419 788 37.9 Plus
Dsim\GD22481-PA 429 GD22481-PA 6..421 3..419 726 36.3 Plus
Dsim\GD23629-PA 430 GD23629-PA 7..430 6..422 602 33.6 Plus
Dsim\GD10206-PA 427 GD10206-PA 29..426 25..421 595 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22186-PA 421 GJ22186-PA 23..421 24..422 1748 77.2 Plus
Dvir\GJ13115-PA 416 GJ13115-PA 17..412 21..417 840 40.8 Plus
Dvir\GJ16228-PA 421 GJ16228-PA 1..419 1..419 800 38.1 Plus
Dvir\GJ16227-PA 430 GJ16227-PA 32..426 26..422 731 36.8 Plus
Dvir\GJ13514-PA 426 GJ13514-PA 27..426 26..422 624 35 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23345-PA 426 GK23345-PA 26..425 24..421 1796 80.5 Plus
Dwil\GK12561-PA 417 GK12561-PA 4..417 7..421 830 38 Plus
Dwil\GK23953-PA 418 GK23953-PA 1..414 1..417 784 39.1 Plus
Dwil\GK23952-PA 418 GK23952-PA 1..414 1..417 772 38.4 Plus
Dwil\GK23954-PA 425 GK23954-PA 6..420 3..422 750 36.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12495-PA 422 GE12495-PA 1..422 1..422 2233 97.2 Plus
Dyak\GE21580-PA 409 GE21580-PA 14..409 25..421 813 40 Plus
Dyak\GE18345-PA 422 GE18345-PA 1..420 1..419 789 37.9 Plus
Dyak\GE18344-PA 429 GE18344-PA 28..421 26..419 727 36.4 Plus
Dyak\GE23465-PA 418 GE23465-PA 18..417 25..421 612 33.6 Plus

RH58587.hyp Sequence

Translation from 41 to 1309

> RH58587.hyp
MKLPILLITLVAMVAAKSAPGRMAARYDHFRIYQLTIETNLQMEELKKIH
EHISVHFLNELGAVGNKYNVIVGPLFHRALEKTLKFLEIVYEVIVDDLQK
LIDESSVGDDSQMEWETYHTLDTIYDWIDQECAAHDFLECKVIGQSYEGR
DIKSIRLSKRSGNKAIFLEGNIHAMEWISSATVTFLLNQLINSEDPEMQR
LSEEYDWIVVPMVNPDGFVYTHEVERLWRKNRRPNGYRNESGDCYGIDMN
RNFDYHWGGAGWNIDEPCDHWFGGEEPNTEVEIISLQNFVSSFEDGYIRS
YMAYHAYGQYVLLPYGHSNTEFPPNYEQMKRIAAAFSDAAADVYGSTFTY
GASGLLNYVVSGAAKDWAYGVKKIPFTCTVELRDKGTFGFFLPSNQITEV
GLEVTAGLKALVNKAAEEGIFD*

RH58587.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-PA 422 CG12374-PA 1..422 1..422 2250 100 Plus
CG14820-PA 416 CG14820-PA 22..412 26..417 803 39.7 Plus
CG18585-PB 422 CG18585-PB 1..420 1..419 790 38.6 Plus
CG18585-PA 422 CG18585-PA 1..420 1..419 790 38.6 Plus
CG7025-PA 429 CG7025-PA 6..421 3..419 741 36.8 Plus