Clone RH58615 Report

Search the DGRC for RH58615

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:586
Well:15
Vector:pFlc-1
Associated Gene/TranscriptPdh-RB
Protein status:RH58615.pep: gold
Sequenced Size:972

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4899 2004-07-15 Blastp of sequenced clone
Pdh 2008-04-29 Release 5.5 accounting
Pdh 2008-08-15 Release 5.9 accounting
Pdh 2008-12-18 5.12 accounting

Clone Sequence Records

RH58615.complete Sequence

972 bp (972 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015186

> RH58615.complete
CAGCAGTGCAACTGAGGAGCTCAGTGCTTGATGAAGCCACAAGGAATACC
ACCGACTACTACACGAATCAGCCAGACCAAGATGTCCTTTCGCGGCAAGA
ATGCAGTGGTGACCGGTGGAGCTGGAGGCATTGGACTGCAGGTGTCCAAG
CAGCTCCTGGCCGCTGGAGCAGCGGTGGCCATCATTGATTTGCAGGATAA
TCTGGAGGAGTTTGTAAAACTTAGGGCCGCTCATCCCACCCAAAGCGTAA
TGATCATCAAGATGGATGTGGCGAACAAGAAGGGTGTGGAAGCCACCTAT
GAGGAGATAGCCAAGACCTTCGGTAACATCGATATTGTGGTCAATGTAGC
CGGGATTTTTAACGACAAGGATGTGCAGAGGACTCTGTTGGTAAATCTCG
GTGGAATCATCAATTCCACACTGAGTGCATTGCCCTACATGGGCAAGGAT
AATGGCGGCAAGGGTGGCATTGTGGTTAACATGAGCTCGGTGGTGGGTCT
GGATCCAATGTTCATCATTCCCGTTTACGGAGCCACCAAGGCTGGCATCA
TCAACTTCACCCGGTGCTTGGCGAACGAAAAGTACTATCAACGCTCGGGC
ATCAAGTTTGTGACTGTTTGTCCTGGAGCTACAATGACGGACATGTTCAC
CAACTTTACGGAGAAGATCATCTTCCCGGAAACGAGTGACGAGACCTATA
GGATCCTGGATAGGCTAAACAAGCAGAGTGCCGCTGATGTCTCTCGATGC
ATTCTGAATGTCCTGGAGAAGGACAAGAACGGAGCTGTCTATGTCATCGA
GGGTAAGCGCGTTTACCCTTTGGAAATTAAGCCCCAGTGGACGGGCAAGG
AACAGGCCCTTTAAGTGGGTTAATTCGTTCACATCCTAAACACATGCATT
TTACAAATATGAAGTTATTATGGACACTAGTTATTTAATAAACAAACGAT
GCACAGAAAAAAAAAAAAAAAA

RH58615.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh.b 1103 Pdh.b 142..1100 1..959 4795 100 Plus
Pdh-RB 1103 Pdh-RB 142..1100 1..959 4795 100 Plus
Pdh-RD 1103 Pdh-RD 142..1100 1..959 4795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16343432..16343831 573..174 2000 100 Minus
chr3L 24539361 chr3L 16342985..16343368 956..573 1875 99.2 Minus
chr3L 24539361 chr3L 16343888..16344063 176..1 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16353680..16354079 573..174 2000 100 Minus
3L 28110227 3L 16353230..16353616 959..573 1935 100 Minus
3L 28110227 3L 16354136..16354311 176..1 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16346780..16347179 573..174 2000 100 Minus
3L 28103327 3L 16346330..16346716 959..573 1935 100 Minus
3L 28103327 3L 16347236..16347411 176..1 880 100 Minus
Blast to na_te.dros performed 2019-03-16 13:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 128..198 222..292 111 65.3 Plus

RH58615.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:20:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16342985..16343367 574..956 99 <- Minus
chr3L 16343432..16343830 175..573 100 <- Minus
chr3L 16343890..16344063 1..174 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:45 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..834 31..864 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:02 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..834 31..864 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..834 31..864 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:17:56 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..834 31..864 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:17:26 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..834 31..864 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:09 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..942 15..956 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:02 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..942 15..956 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..942 15..956 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:17:56 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..942 15..956 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:26 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RB 1..942 15..956 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 574..956 100 <- Minus
3L 16353680..16354078 175..573 100 <- Minus
3L 16354138..16354311 1..174 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 574..956 100 <- Minus
3L 16353680..16354078 175..573 100 <- Minus
3L 16354138..16354311 1..174 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 574..956 100 <- Minus
3L 16353680..16354078 175..573 100 <- Minus
3L 16354138..16354311 1..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:52 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16347238..16347411 1..174 100   Minus
arm_3L 16346333..16346715 574..956 100 <- Minus
arm_3L 16346780..16347178 175..573 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:01 Download gff for RH58615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16346333..16346715 574..956 100 <- Minus
3L 16346780..16347178 175..573 100 <- Minus
3L 16347238..16347411 1..174 100   Minus

RH58615.hyp Sequence

Translation from 30 to 863

> RH58615.hyp
MKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAVA
IIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIAKTFGNI
DIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGKGGIVVN
MSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPGA
TMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNVLEKDKN
GAVYVIEGKRVYPLEIKPQWTGKEQAL*

RH58615.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh-PB 277 CG4899-PB 1..277 1..277 1406 100 Plus
Pdh-PA 278 CG4899-PA 1..278 1..277 1394 99.6 Plus
Pdh-PD 260 CG4899-PD 1..260 18..277 1317 100 Plus
Pdh-PC 261 CG4899-PC 1..261 18..277 1305 99.6 Plus
CG4842-PA 259 CG4842-PA 1..253 18..270 495 39.4 Plus

RH58615.pep Sequence

Translation from 30 to 863

> RH58615.pep
MKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAVA
IIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIAKTFGNI
DIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGKGGIVVN
MSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPGA
TMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNVLEKDKN
GAVYVIEGKRVYPLEIKPQWTGKEQAL*

RH58615.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24389-PA 261 GF24389-PA 1..261 18..277 1327 96.2 Plus
Dana\GF10118-PA 259 GF10118-PA 1..256 18..273 482 38.1 Plus
Dana\Adhr-PA 272 GF14889-PA 6..260 22..277 314 28.5 Plus
Dana\GF12913-PA 372 GF12913-PA 123..368 22..270 314 29.8 Plus
Dana\Adh-PA 256 GF14888-PA 3..252 18..270 312 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13462-PA 261 GG13462-PA 1..261 18..277 1348 98.9 Plus
Dere\GG16001-PA 259 GG16001-PA 1..253 18..270 494 38.6 Plus
Dere\GG25347-PA 256 GG25347-PA 4..250 20..263 398 33.1 Plus
Dere\Adhr-PA 272 GG25121-PA 6..260 22..277 322 29.1 Plus
Dere\Adh-PA 256 GG25120-PA 3..252 18..270 292 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15599-PA 261 GH15599-PA 1..261 18..277 1223 87.7 Plus
Dgri\GH15889-PA 261 GH15889-PA 1..253 18..270 437 34.6 Plus
Dgri\GH13326-PA 257 GH13326-PA 4..255 20..270 406 32 Plus
Dgri\GH13404-PA 274 GH13404-PA 6..258 22..275 330 29.3 Plus
Dgri\Adh-PA 254 GH13025-PA 1..250 18..270 294 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh-PB 277 CG4899-PB 1..277 1..277 1406 100 Plus
Pdh-PA 278 CG4899-PA 1..278 1..277 1394 99.6 Plus
Pdh-PD 260 CG4899-PD 1..260 18..277 1317 100 Plus
Pdh-PC 261 CG4899-PC 1..261 18..277 1305 99.6 Plus
CG4842-PA 259 CG4842-PA 1..253 18..270 495 39.4 Plus
CG18814-PB 267 CG18814-PB 1..254 18..270 479 37 Plus
Fbp2-PC 256 CG3763-PC 6..240 22..256 404 33.5 Plus
Fbp2-PB 256 CG3763-PB 6..240 22..256 404 33.5 Plus
Fbp2-PA 256 CG3763-PA 6..240 22..256 404 33.5 Plus
Adhr-PC 272 CG3484-PC 6..240 22..257 323 29 Plus
Adhr-PB 272 CG3484-PB 6..240 22..257 323 29 Plus
Adhr-PA 272 CG3484-PA 6..240 22..257 323 29 Plus
Adh-PE 256 CG3481-PE 1..252 18..270 300 30.4 Plus
Adh-PF 256 CG3481-PF 1..252 18..270 300 30.4 Plus
Adh-PH 256 CG3481-PH 1..252 18..270 300 30.4 Plus
Adh-PI 256 CG3481-PI 1..252 18..270 300 30.4 Plus
Adh-PC 256 CG3481-PC 1..252 18..270 300 30.4 Plus
scu-PA 255 CG7113-PA 3..207 23..213 210 31 Plus
CG3699-PA 251 CG3699-PA 1..189 18..208 198 33 Plus
CG31548-PA 256 CG31548-PA 1..191 18..205 194 29 Plus
CG12171-PA 257 CG12171-PA 3..192 19..205 174 27.6 Plus
CG31549-PB 257 CG31549-PB 3..192 19..205 173 27.5 Plus
CG31549-PA 257 CG31549-PA 3..192 19..205 173 27.5 Plus
CG17121-PA 361 CG17121-PA 92..259 22..183 171 29.8 Plus
CG40485-PA 231 CG40485-PA 9..225 25..231 152 28.3 Plus
CG3603-PB 249 CG3603-PB 8..195 22..205 152 30.8 Plus
CG3603-PA 249 CG3603-PA 8..195 22..205 152 30.8 Plus
CG31546-PA 264 CG31546-PA 9..199 18..205 149 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16877-PA 261 GI16877-PA 1..261 18..277 1227 88.5 Plus
Dmoj\GI16540-PA 257 GI16540-PA 1..251 18..270 433 36.2 Plus
Dmoj\GI17665-PA 258 GI17665-PA 4..253 20..269 413 33.2 Plus
Dmoj\GI17645-PA 276 GI17645-PA 6..260 22..277 309 28.4 Plus
Dmoj\Adh1-PA 254 GI17644-PA 1..250 18..270 286 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18003-PA 184 GL18003-PA 1..180 18..198 776 85.7 Plus
Dper\GL17859-PA 258 GL17859-PA 1..253 18..270 485 37.8 Plus
Dper\GL20478-PA 70 GL20478-PA 1..70 208..277 354 92.9 Plus
Dper\GL26147-PA 256 GL26147-PA 4..250 20..263 348 32.3 Plus
Dper\Adh-PA 254 GL25993-PA 1..250 18..270 321 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18512-PA 261 GA18512-PA 1..261 18..277 1310 94.6 Plus
Dpse\GA18471-PA 258 GA18471-PA 1..253 18..270 487 37.8 Plus
Dpse\GA17670-PA 256 GA17670-PA 4..250 20..263 348 32.3 Plus
Dpse\Adh-PA 254 GA17214-PA 1..250 18..270 320 31.2 Plus
Dpse\Adhr-PA 278 GA25223-PA 6..258 22..275 317 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24411-PA 261 GM24411-PA 1..261 18..277 1351 98.9 Plus
Dsec\GM25632-PA 259 GM25632-PA 1..253 18..270 492 39 Plus
Dsec\GM25633-PA 267 GM25633-PA 1..250 18..266 443 34.8 Plus
Dsec\GM17449-PA 256 GM17449-PA 4..240 20..256 399 32.8 Plus
Dsec\Adhr-PA 272 GM15667-PA 6..258 22..275 326 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12481-PA 261 GD12481-PA 1..261 18..277 1350 98.9 Plus
Dsim\GD14635-PA 259 GD14635-PA 1..253 18..270 486 38.6 Plus
Dsim\Fbp2-PA 256 GD23602-PA 4..250 20..263 401 32.7 Plus
Dsim\Adhr-PA 272 GD23969-PA 6..258 22..275 326 28.7 Plus
Dsim\GD14637-PA 164 GD14637-PA 6..151 125..270 304 38.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12626-PA 261 GJ12626-PA 1..261 18..277 1212 87 Plus
Dvir\GJ17861-PA 257 GJ17861-PA 3..255 19..270 418 33.5 Plus
Dvir\GJ12792-PA 259 GJ12792-PA 1..253 18..270 413 36.7 Plus
Dvir\Adhr-PA 275 GJ18210-PA 6..260 22..277 313 28.7 Plus
Dvir\Adh1-PA 254 GJ18208-PA 1..250 18..270 297 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20840-PA 260 GK20840-PA 1..260 18..276 1227 87.7 Plus
Dwil\GK14485-PA 260 GK14485-PA 1..254 18..270 449 36.2 Plus
Dwil\GK17292-PA 259 GK17292-PA 32..256 48..273 419 35.8 Plus
Dwil\GK24204-PA 256 GK24204-PA 4..250 20..263 408 33.5 Plus
Dwil\GK17293-PA 259 GK17293-PA 22..253 38..270 397 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pdh-PA 261 GE22908-PA 1..261 18..277 1345 98.5 Plus
Dyak\GE23094-PA 259 GE23094-PA 1..253 18..270 488 38.6 Plus
Dyak\GE23092-PA 259 GE23092-PA 1..253 18..270 479 38.2 Plus
Dyak\GE23095-PA 260 GE23095-PA 1..254 18..270 446 34.3 Plus
Dyak\GE23093-PA 260 GE23093-PA 1..254 18..270 444 34.6 Plus