Clone RH58949 Report

Search the DGRC for RH58949

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:589
Well:49
Vector:pFlc-1
Associated Gene/TranscriptinaD-RA
Protein status:RH58949.pep: gold
Preliminary Size:2290
Sequenced Size:2312

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3504 2002-01-01 Sim4 clustering to Release 2
CG3504 2003-01-01 Sim4 clustering to Release 3
CG3504 2003-02-14 Blastp of sequenced clone
inaD 2008-04-29 Release 5.5 accounting
inaD 2008-08-15 Release 5.9 accounting
inaD 2008-12-18 5.12 accounting

Clone Sequence Records

RH58949.complete Sequence

2312 bp (2312 high quality bases) assembled on 2003-02-14

GenBank Submission: BT004473

> RH58949.complete
GAGTTTAGGCGCACTTTTCAATGGACTCAAATCGGGCGCAGCCAACGCGG
AATATTCACAAATAATAATTAAGTGAAAACCCATAACAATAAATATTCGA
TATTACATTTGAGCTTAATTCGGTGCGCTTAATGTCCGGTCAGTGAGTCG
CGAGTTTTTGGCTAGGATTACGGAGCAGTCGATCTCAAGCAGCGAGGATG
GTTCAGTTCCTGGGCAAACAGGGCACCGCGGGTGAGCTCATTCACATGGT
GACCCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCTGCATAGTGCGCG
GCGAGGTGAAGGATTCGCCCAACACCAAGACCACCGGCATCTTCATCAAG
GGCATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCGCCTAAAGGTTGG
CGATCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCAACTCCACCGAAC
AGGCGGTCATCGATCTCATCAAGGAGGCGGACTTCAAGATCGAACTGGAG
ATTCAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAAGTCAGATCCGCG
GAGCAATGGCTACATGCAGGCCAAGAACAAGTTCAACCAGGAGCAGACCA
CCAACAACAATGCGTCCGGAGGTCAGGGAATGGGGCAAGGTCAGGGTCAG
GGTCAGGGAATGGCTGGCATGAACCGGCAGCAATCGATGCAGAAGCGGAA
TACCACATTCACGGCCTCGATGCGTCAGAAGCATAGTAACTACGCCGACG
AGGATGACGAGGACACCCGGGACATGACCGGTCGCATTCGCACGGAGGCG
GGTTATGAGATCGATCGAGCATCCGCCGGTAATTGCAAACTCAACAAGCA
GGAAAAGGATCGCGACAAGGAGCAGGAAGATGAATTTGGCTACACGATGG
CTAAGATCAACAAGCGGTACAACATGATGAAGGATCTGCGCAGGATCGAG
GTCCAGAGGGACGCCAGCAAGCCACTGGGACTCGCACTCGCTGGCCACAA
GGACCGCCAGAAGATGGCCTGCTTTGTTGCCGGTGTGGATCCCAACGGAG
CATTGGGTAGCGTGGACATCAAACCGGGCGACGAGATCGTCGAGGTCAAC
GGCAATGTGCTGAAGAATCGCTGCCACTTGAACGCTTCCGCCGTGTTCAA
GAACGTGGATGGGGATAAGCTCGTGATGATCACCTCGCGACGCAAGCCCA
ACGATGAGGGCATGTGCGTCAAGCCCATCAAGAAGTTCCCCACCGCGTCT
GATGAGACTAAGTTTATCTTCGACCAGTTTCCCAAGGCGCGCACGGTGCA
GGTGCGCAAGGAGGGTTTCCTGGGCATCATGGTCATCTATGGCAAGCACG
CTGAGGTGGGAAGTGGCATTTTCATCTCGGATCTGAGAGAGGGATCGAAT
GCCGAGTTGGCGGGCGTGAAAGTGGGCGACATGCTGCTGGCCGTTAATCA
GGATGTAACACTGGAATCCAACTACGATGATGCTACTGGACTGCTTAAAC
GTGCCGAGGGCGTAGTGACCATGATTCTATTGACTCTCAAGAGCGAGGAG
GCGATAAAGGCTGAGAAGGCGGCGGAAGAGAAAAAGAAGGAGGAGGCCAA
GAAAGAGGAGGAAAAGCCACAGGAACCCGCCACAGCCGAGATCAAGCCGA
ACAAAAAGATACTCATTGAGTTGAAGGTGGAAAAGAAGCCAATGGGCGTC
ATCGTCTGCGGCGGCAAGAACAACCATGTCACGACTGGCTGTGTAATCAC
CCACGTTTATCCGGAGGGACAAGTGGCAGCCGACAAGCGCCTCAAGATCT
TTGACCACATTTGCGATATAAATGGTACGCCAATCCACGTGGGATCCATG
ACGACACTGAAGGTCCATCAGTTATTCCACACCACATACGAGAAAGCGGT
CACCCTAACGGTCTTCCGCGCTGATCCTCCGGAGCTGGAAAAGTTTAACG
TTGACCTTATGAAAAAAGCAGGCAAGGAGCTGGGCCTGTCGCTTTCTCCC
AACGAAATTGGATGTACCATCGCGGACTTGATTCAAGGACAATACCCGGA
GATAGACAGCAAACTGCAGCGCGGCGATATTATCACCAAATTCAATGGCG
ATGCCTTGGAGGGTCTTCCGTTCCAGGTGTGCTACGCCTTGTTCAAGGGA
GCCAACGGCAAGGTATCGATGGAAGTGACACGACCCAAGCCCACTCTACG
TACGGAGGCACCCAAGGCCTAGAGACGATCCTCATTCTCCTCCTCCGGTA
GCGAAGCAGTGCAGCAATTCAATAAAAGAACCAACAATTCGAATTCAAAA
AAAAAAAAAAAA

RH58949.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RA 2295 inaD-RA 1..2295 2..2296 11475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18744159..18744734 809..234 2835 99.5 Minus
chr2R 21145070 chr2R 18743596..18743952 1256..900 1785 100 Minus
chr2R 21145070 chr2R 18742582..18742879 2030..1733 1445 99 Minus
chr2R 21145070 chr2R 18742246..18742512 2296..2030 1320 99.6 Minus
chr2R 21145070 chr2R 18745117..18745349 234..2 1165 100 Minus
chr2R 21145070 chr2R 18743306..18743533 1482..1255 1125 99.6 Minus
chr2R 21145070 chr2R 18742939..18743079 1733..1593 705 100 Minus
chr2R 21145070 chr2R 18743136..18743247 1593..1482 560 100 Minus
chr2R 21145070 chr2R 18744008..18744106 906..808 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:34:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22857601..22858176 809..234 2880 100 Minus
2R 25286936 2R 22857038..22857394 1256..900 1785 100 Minus
2R 25286936 2R 22856024..22856321 2030..1733 1490 100 Minus
2R 25286936 2R 22855684..22855954 2300..2030 1355 100 Minus
2R 25286936 2R 22858562..22858794 234..2 1165 100 Minus
2R 25286936 2R 22856748..22856975 1482..1255 1140 100 Minus
2R 25286936 2R 22856381..22856521 1733..1593 705 100 Minus
2R 25286936 2R 22856578..22856689 1593..1482 560 100 Minus
2R 25286936 2R 22857450..22857548 906..808 480 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22858800..22859375 809..234 2880 100 Minus
2R 25260384 2R 22858237..22858593 1256..900 1785 100 Minus
2R 25260384 2R 22857223..22857520 2030..1733 1490 100 Minus
2R 25260384 2R 22856883..22857153 2300..2030 1355 100 Minus
2R 25260384 2R 22859761..22859993 234..2 1165 100 Minus
2R 25260384 2R 22857947..22858174 1482..1255 1140 100 Minus
2R 25260384 2R 22857580..22857720 1733..1593 705 100 Minus
2R 25260384 2R 22857777..22857888 1593..1482 560 100 Minus
2R 25260384 2R 22858649..22858747 906..808 480 98.9 Minus
Blast to na_te.dros performed on 2019-03-15 22:57:50 has no hits.

RH58949.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:10 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18742246..18742511 2031..2296 99 <- Minus
chr2R 18742582..18742878 1734..2030 98 <- Minus
chr2R 18742939..18743078 1594..1733 100 <- Minus
chr2R 18743136..18743247 1482..1593 100 <- Minus
chr2R 18743307..18743531 1257..1481 99 <- Minus
chr2R 18743596..18743951 901..1256 100 <- Minus
chr2R 18744014..18744104 810..900 100 <- Minus
chr2R 18744159..18744733 235..809 99 <- Minus
chr2R 18745117..18745349 1..234 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:48 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2025 198..2222 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:02 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2025 198..2222 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:23:55 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2025 198..2222 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:12 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2025 198..2222 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:24 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2025 198..2222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:04:28 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2295 2..2296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:02 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2295 2..2296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:23:55 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2295 2..2296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:12 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2295 2..2296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:24 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1..2295 2..2296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:10 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22855688..22855953 2031..2296 100 <- Minus
2R 22856024..22856320 1734..2030 100 <- Minus
2R 22856381..22856520 1594..1733 100 <- Minus
2R 22856578..22856689 1482..1593 100 <- Minus
2R 22856749..22856973 1257..1481 100 <- Minus
2R 22857038..22857393 901..1256 100 <- Minus
2R 22857456..22857546 810..900 100 <- Minus
2R 22857601..22858175 235..809 100 <- Minus
2R 22858562..22858794 1..234 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:10 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22855688..22855953 2031..2296 100 <- Minus
2R 22856024..22856320 1734..2030 100 <- Minus
2R 22856381..22856520 1594..1733 100 <- Minus
2R 22856578..22856689 1482..1593 100 <- Minus
2R 22856749..22856973 1257..1481 100 <- Minus
2R 22857038..22857393 901..1256 100 <- Minus
2R 22857456..22857546 810..900 100 <- Minus
2R 22857601..22858175 235..809 100 <- Minus
2R 22858562..22858794 1..234 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:10 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22855688..22855953 2031..2296 100 <- Minus
2R 22856024..22856320 1734..2030 100 <- Minus
2R 22856381..22856520 1594..1733 100 <- Minus
2R 22856578..22856689 1482..1593 100 <- Minus
2R 22856749..22856973 1257..1481 100 <- Minus
2R 22857038..22857393 901..1256 100 <- Minus
2R 22857456..22857546 810..900 100 <- Minus
2R 22857601..22858175 235..809 100 <- Minus
2R 22858562..22858794 1..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:23:55 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18746085..18746317 1..234 99   Minus
arm_2R 18743211..18743476 2031..2296 100 <- Minus
arm_2R 18743547..18743843 1734..2030 100 <- Minus
arm_2R 18743904..18744043 1594..1733 100 <- Minus
arm_2R 18744101..18744212 1482..1593 100 <- Minus
arm_2R 18744272..18744496 1257..1481 100 <- Minus
arm_2R 18744561..18744916 901..1256 100 <- Minus
arm_2R 18744979..18745069 810..900 100 <- Minus
arm_2R 18745124..18745698 235..809 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:52 Download gff for RH58949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22859779..22860011 1..234 99   Minus
2R 22858818..22859392 235..809 100 <- Minus
2R 22856905..22857170 2031..2296 100 <- Minus
2R 22857241..22857537 1734..2030 100 <- Minus
2R 22857598..22857737 1594..1733 100 <- Minus
2R 22857795..22857906 1482..1593 100 <- Minus
2R 22857966..22858190 1257..1481 100 <- Minus
2R 22858255..22858610 901..1256 100 <- Minus
2R 22858673..22858763 810..900 100 <- Minus

RH58949.pep Sequence

Translation from 197 to 2221

> RH58949.pep
MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI
KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL
EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG
QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE
AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI
EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV
NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA
SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS
NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE
EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG
VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS
MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS
PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK
GANGKVSMEVTRPKPTLRTEAPKA*

RH58949.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11324-PA 672 GF11324-PA 1..672 1..674 3109 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20089-PA 678 GG20089-PA 1..678 1..674 3534 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20094-PA 648 GH20094-PA 1..648 17..673 2851 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-PA 674 CG3504-PA 1..674 1..674 3476 100 Plus
inaD-PB 686 CG3504-PB 1..686 1..674 3453 98.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18992-PA 665 GI18992-PA 15..665 13..673 2879 83.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10199-PA 661 GL10199-PA 1..661 1..673 2857 84 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17487-PA 675 GA17487-PA 1..675 1..673 3018 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15606-PA 675 GM15606-PA 1..675 1..674 3552 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25102-PA 673 GD25102-PA 1..673 1..674 3517 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19956-PA 523 GJ19956-PA 2..523 157..674 2239 84.7 Plus
Dvir\GJ19955-PA 142 GJ19955-PA 17..138 15..138 561 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20857-PA 675 GK20857-PA 1..674 1..673 2888 84 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11628-PA 674 GE11628-PA 1..674 1..674 3530 97.9 Plus

RH58949.hyp Sequence

Translation from 197 to 2221

> RH58949.hyp
MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI
KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL
EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG
QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE
AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI
EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV
NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA
SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS
NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE
EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG
VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS
MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS
PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK
GANGKVSMEVTRPKPTLRTEAPKA*

RH58949.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-PA 674 CG3504-PA 1..674 1..674 3476 100 Plus
inaD-PB 686 CG3504-PB 1..686 1..674 3453 98.3 Plus