BDGP Sequence Production Resources |
Search the DGRC for RH58949
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 589 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | inaD-RA |
Protein status: | RH58949.pep: gold |
Preliminary Size: | 2290 |
Sequenced Size: | 2312 |
Gene | Date | Evidence |
---|---|---|
CG3504 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3504 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3504 | 2003-02-14 | Blastp of sequenced clone |
inaD | 2008-04-29 | Release 5.5 accounting |
inaD | 2008-08-15 | Release 5.9 accounting |
inaD | 2008-12-18 | 5.12 accounting |
2312 bp (2312 high quality bases) assembled on 2003-02-14
GenBank Submission: BT004473
> RH58949.complete GAGTTTAGGCGCACTTTTCAATGGACTCAAATCGGGCGCAGCCAACGCGG AATATTCACAAATAATAATTAAGTGAAAACCCATAACAATAAATATTCGA TATTACATTTGAGCTTAATTCGGTGCGCTTAATGTCCGGTCAGTGAGTCG CGAGTTTTTGGCTAGGATTACGGAGCAGTCGATCTCAAGCAGCGAGGATG GTTCAGTTCCTGGGCAAACAGGGCACCGCGGGTGAGCTCATTCACATGGT GACCCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCTGCATAGTGCGCG GCGAGGTGAAGGATTCGCCCAACACCAAGACCACCGGCATCTTCATCAAG GGCATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCGCCTAAAGGTTGG CGATCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCAACTCCACCGAAC AGGCGGTCATCGATCTCATCAAGGAGGCGGACTTCAAGATCGAACTGGAG ATTCAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAAGTCAGATCCGCG GAGCAATGGCTACATGCAGGCCAAGAACAAGTTCAACCAGGAGCAGACCA CCAACAACAATGCGTCCGGAGGTCAGGGAATGGGGCAAGGTCAGGGTCAG GGTCAGGGAATGGCTGGCATGAACCGGCAGCAATCGATGCAGAAGCGGAA TACCACATTCACGGCCTCGATGCGTCAGAAGCATAGTAACTACGCCGACG AGGATGACGAGGACACCCGGGACATGACCGGTCGCATTCGCACGGAGGCG GGTTATGAGATCGATCGAGCATCCGCCGGTAATTGCAAACTCAACAAGCA GGAAAAGGATCGCGACAAGGAGCAGGAAGATGAATTTGGCTACACGATGG CTAAGATCAACAAGCGGTACAACATGATGAAGGATCTGCGCAGGATCGAG GTCCAGAGGGACGCCAGCAAGCCACTGGGACTCGCACTCGCTGGCCACAA GGACCGCCAGAAGATGGCCTGCTTTGTTGCCGGTGTGGATCCCAACGGAG CATTGGGTAGCGTGGACATCAAACCGGGCGACGAGATCGTCGAGGTCAAC GGCAATGTGCTGAAGAATCGCTGCCACTTGAACGCTTCCGCCGTGTTCAA GAACGTGGATGGGGATAAGCTCGTGATGATCACCTCGCGACGCAAGCCCA ACGATGAGGGCATGTGCGTCAAGCCCATCAAGAAGTTCCCCACCGCGTCT GATGAGACTAAGTTTATCTTCGACCAGTTTCCCAAGGCGCGCACGGTGCA GGTGCGCAAGGAGGGTTTCCTGGGCATCATGGTCATCTATGGCAAGCACG CTGAGGTGGGAAGTGGCATTTTCATCTCGGATCTGAGAGAGGGATCGAAT GCCGAGTTGGCGGGCGTGAAAGTGGGCGACATGCTGCTGGCCGTTAATCA GGATGTAACACTGGAATCCAACTACGATGATGCTACTGGACTGCTTAAAC GTGCCGAGGGCGTAGTGACCATGATTCTATTGACTCTCAAGAGCGAGGAG GCGATAAAGGCTGAGAAGGCGGCGGAAGAGAAAAAGAAGGAGGAGGCCAA GAAAGAGGAGGAAAAGCCACAGGAACCCGCCACAGCCGAGATCAAGCCGA ACAAAAAGATACTCATTGAGTTGAAGGTGGAAAAGAAGCCAATGGGCGTC ATCGTCTGCGGCGGCAAGAACAACCATGTCACGACTGGCTGTGTAATCAC CCACGTTTATCCGGAGGGACAAGTGGCAGCCGACAAGCGCCTCAAGATCT TTGACCACATTTGCGATATAAATGGTACGCCAATCCACGTGGGATCCATG ACGACACTGAAGGTCCATCAGTTATTCCACACCACATACGAGAAAGCGGT CACCCTAACGGTCTTCCGCGCTGATCCTCCGGAGCTGGAAAAGTTTAACG TTGACCTTATGAAAAAAGCAGGCAAGGAGCTGGGCCTGTCGCTTTCTCCC AACGAAATTGGATGTACCATCGCGGACTTGATTCAAGGACAATACCCGGA GATAGACAGCAAACTGCAGCGCGGCGATATTATCACCAAATTCAATGGCG ATGCCTTGGAGGGTCTTCCGTTCCAGGTGTGCTACGCCTTGTTCAAGGGA GCCAACGGCAAGGTATCGATGGAAGTGACACGACCCAAGCCCACTCTACG TACGGAGGCACCCAAGGCCTAGAGACGATCCTCATTCTCCTCCTCCGGTA GCGAAGCAGTGCAGCAATTCAATAAAAGAACCAACAATTCGAATTCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
inaD-RA | 2295 | inaD-RA | 1..2295 | 2..2296 | 11475 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18744159..18744734 | 809..234 | 2835 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 18743596..18743952 | 1256..900 | 1785 | 100 | Minus |
chr2R | 21145070 | chr2R | 18742582..18742879 | 2030..1733 | 1445 | 99 | Minus |
chr2R | 21145070 | chr2R | 18742246..18742512 | 2296..2030 | 1320 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 18745117..18745349 | 234..2 | 1165 | 100 | Minus |
chr2R | 21145070 | chr2R | 18743306..18743533 | 1482..1255 | 1125 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 18742939..18743079 | 1733..1593 | 705 | 100 | Minus |
chr2R | 21145070 | chr2R | 18743136..18743247 | 1593..1482 | 560 | 100 | Minus |
chr2R | 21145070 | chr2R | 18744008..18744106 | 906..808 | 480 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22857601..22858176 | 809..234 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 22857038..22857394 | 1256..900 | 1785 | 100 | Minus |
2R | 25286936 | 2R | 22856024..22856321 | 2030..1733 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 22855684..22855954 | 2300..2030 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 22858562..22858794 | 234..2 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 22856748..22856975 | 1482..1255 | 1140 | 100 | Minus |
2R | 25286936 | 2R | 22856381..22856521 | 1733..1593 | 705 | 100 | Minus |
2R | 25286936 | 2R | 22856578..22856689 | 1593..1482 | 560 | 100 | Minus |
2R | 25286936 | 2R | 22857450..22857548 | 906..808 | 480 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22858800..22859375 | 809..234 | 2880 | 100 | Minus |
2R | 25260384 | 2R | 22858237..22858593 | 1256..900 | 1785 | 100 | Minus |
2R | 25260384 | 2R | 22857223..22857520 | 2030..1733 | 1490 | 100 | Minus |
2R | 25260384 | 2R | 22856883..22857153 | 2300..2030 | 1355 | 100 | Minus |
2R | 25260384 | 2R | 22859761..22859993 | 234..2 | 1165 | 100 | Minus |
2R | 25260384 | 2R | 22857947..22858174 | 1482..1255 | 1140 | 100 | Minus |
2R | 25260384 | 2R | 22857580..22857720 | 1733..1593 | 705 | 100 | Minus |
2R | 25260384 | 2R | 22857777..22857888 | 1593..1482 | 560 | 100 | Minus |
2R | 25260384 | 2R | 22858649..22858747 | 906..808 | 480 | 98.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18742246..18742511 | 2031..2296 | 99 | <- | Minus |
chr2R | 18742582..18742878 | 1734..2030 | 98 | <- | Minus |
chr2R | 18742939..18743078 | 1594..1733 | 100 | <- | Minus |
chr2R | 18743136..18743247 | 1482..1593 | 100 | <- | Minus |
chr2R | 18743307..18743531 | 1257..1481 | 99 | <- | Minus |
chr2R | 18743596..18743951 | 901..1256 | 100 | <- | Minus |
chr2R | 18744014..18744104 | 810..900 | 100 | <- | Minus |
chr2R | 18744159..18744733 | 235..809 | 99 | <- | Minus |
chr2R | 18745117..18745349 | 1..234 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2025 | 198..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2025 | 198..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2025 | 198..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2025 | 198..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2025 | 198..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2295 | 2..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2295 | 2..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2295 | 2..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2295 | 2..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
inaD-RA | 1..2295 | 2..2296 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22855688..22855953 | 2031..2296 | 100 | <- | Minus |
2R | 22856024..22856320 | 1734..2030 | 100 | <- | Minus |
2R | 22856381..22856520 | 1594..1733 | 100 | <- | Minus |
2R | 22856578..22856689 | 1482..1593 | 100 | <- | Minus |
2R | 22856749..22856973 | 1257..1481 | 100 | <- | Minus |
2R | 22857038..22857393 | 901..1256 | 100 | <- | Minus |
2R | 22857456..22857546 | 810..900 | 100 | <- | Minus |
2R | 22857601..22858175 | 235..809 | 100 | <- | Minus |
2R | 22858562..22858794 | 1..234 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22855688..22855953 | 2031..2296 | 100 | <- | Minus |
2R | 22856024..22856320 | 1734..2030 | 100 | <- | Minus |
2R | 22856381..22856520 | 1594..1733 | 100 | <- | Minus |
2R | 22856578..22856689 | 1482..1593 | 100 | <- | Minus |
2R | 22856749..22856973 | 1257..1481 | 100 | <- | Minus |
2R | 22857038..22857393 | 901..1256 | 100 | <- | Minus |
2R | 22857456..22857546 | 810..900 | 100 | <- | Minus |
2R | 22857601..22858175 | 235..809 | 100 | <- | Minus |
2R | 22858562..22858794 | 1..234 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22855688..22855953 | 2031..2296 | 100 | <- | Minus |
2R | 22856024..22856320 | 1734..2030 | 100 | <- | Minus |
2R | 22856381..22856520 | 1594..1733 | 100 | <- | Minus |
2R | 22856578..22856689 | 1482..1593 | 100 | <- | Minus |
2R | 22856749..22856973 | 1257..1481 | 100 | <- | Minus |
2R | 22857038..22857393 | 901..1256 | 100 | <- | Minus |
2R | 22857456..22857546 | 810..900 | 100 | <- | Minus |
2R | 22857601..22858175 | 235..809 | 100 | <- | Minus |
2R | 22858562..22858794 | 1..234 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18746085..18746317 | 1..234 | 99 | Minus | |
arm_2R | 18743211..18743476 | 2031..2296 | 100 | <- | Minus |
arm_2R | 18743547..18743843 | 1734..2030 | 100 | <- | Minus |
arm_2R | 18743904..18744043 | 1594..1733 | 100 | <- | Minus |
arm_2R | 18744101..18744212 | 1482..1593 | 100 | <- | Minus |
arm_2R | 18744272..18744496 | 1257..1481 | 100 | <- | Minus |
arm_2R | 18744561..18744916 | 901..1256 | 100 | <- | Minus |
arm_2R | 18744979..18745069 | 810..900 | 100 | <- | Minus |
arm_2R | 18745124..18745698 | 235..809 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22859779..22860011 | 1..234 | 99 | Minus | |
2R | 22858818..22859392 | 235..809 | 100 | <- | Minus |
2R | 22856905..22857170 | 2031..2296 | 100 | <- | Minus |
2R | 22857241..22857537 | 1734..2030 | 100 | <- | Minus |
2R | 22857598..22857737 | 1594..1733 | 100 | <- | Minus |
2R | 22857795..22857906 | 1482..1593 | 100 | <- | Minus |
2R | 22857966..22858190 | 1257..1481 | 100 | <- | Minus |
2R | 22858255..22858610 | 901..1256 | 100 | <- | Minus |
2R | 22858673..22858763 | 810..900 | 100 | <- | Minus |
Translation from 197 to 2221
> RH58949.pep MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK GANGKVSMEVTRPKPTLRTEAPKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11324-PA | 672 | GF11324-PA | 1..672 | 1..674 | 3109 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20089-PA | 678 | GG20089-PA | 1..678 | 1..674 | 3534 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20094-PA | 648 | GH20094-PA | 1..648 | 17..673 | 2851 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
inaD-PA | 674 | CG3504-PA | 1..674 | 1..674 | 3476 | 100 | Plus |
inaD-PB | 686 | CG3504-PB | 1..686 | 1..674 | 3453 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18992-PA | 665 | GI18992-PA | 15..665 | 13..673 | 2879 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10199-PA | 661 | GL10199-PA | 1..661 | 1..673 | 2857 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17487-PA | 675 | GA17487-PA | 1..675 | 1..673 | 3018 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15606-PA | 675 | GM15606-PA | 1..675 | 1..674 | 3552 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25102-PA | 673 | GD25102-PA | 1..673 | 1..674 | 3517 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19956-PA | 523 | GJ19956-PA | 2..523 | 157..674 | 2239 | 84.7 | Plus |
Dvir\GJ19955-PA | 142 | GJ19955-PA | 17..138 | 15..138 | 561 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20857-PA | 675 | GK20857-PA | 1..674 | 1..673 | 2888 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11628-PA | 674 | GE11628-PA | 1..674 | 1..674 | 3530 | 97.9 | Plus |
Translation from 197 to 2221
> RH58949.hyp MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK GANGKVSMEVTRPKPTLRTEAPKA*