Clone RH59152 Report

Search the DGRC for RH59152

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:591
Well:52
Vector:pFlc-1
Associated Gene/Transcriptl(1)G0334-RC
Protein status:RH59152.pep: gold
Sequenced Size:2050

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
l(1)G0334-RC 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RH59152.complete Sequence

2050 bp assembled on 2011-01-03

GenBank Submission: BT125990.1

> RH59152.complete
GATACGGTTGTTATGGTTGTGCAATATAGTAGTTGATAAACTAATCTCGC
TACCTTTTTTTCCGATTGTTTAACTTACAACGACGCGCGGCGGTGCGACT
GAGACACCAGATATATAGCGTGCGATTCTAGATCCGGACAATCCGCATAT
AGAAAGCCCCCATTCACATCCAATTTCTGTCAGTCGAACGAGAATAACAC
AGCGAAAATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTATTG
TTAAGCAACTGCAAAAACGTTGCCATAACAACAACAACAACAACATCATC
ATCAGCGGATGTCGGATACTTAGCAACAACAACAACAACAGCAGCATCGA
TATCATCAGGAATGGGAGATATTCATCGTCGTTTTTCGGTTTATTCCAGA
ATGCAGCCCAAGCAGGTGTTTCGAAAACCAACAATTATGCCACGGAGGCC
ACCGTTCAAGTGAATCGGCCCTTCAAGCTGCACCGCCTGGACGAAGGACC
CGCCACGGAAGTGAAGCTGACCAAGGATCAGGCCCTCAAGTACTACACAC
AGATGCAGACGATCCGTCGGTTGGAGACGGCCGCCGGTAATCTGTACAAG
GAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCCGGCCAGGAGGCATG
CGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGACAACATCATCTCGG
CGTACCGTGTCCACGGATGGACCTACCTGATGGGCGTCTCACCCAGCGGC
GTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGTGCCCGCGGCAAGGG
TGGCTCCATGCACATGTACGCACCGAACTTCTACGGAGGCAATGGCATCG
TGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCTTGGCCTGCAAGTAC
AAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGTGATGGTGCCGCCAA
TCAAGGACAGGTGTTCGAGGCTTACAACATGGCCTACCTGTGGAAACTGC
CTGTGATCTTTGTCTGCGAGAACAACAACTACGGAATGGGCACCAGTTCT
GAGCGTGCTTCCTGCAACACTGATTACTATACCCGCGGCGACGCTCTGCC
CGGAATCTGGGTGGACGGCATGGATGTGCTGGCCGTGCGCAGCGCCACCG
AGTTCGCCATCAACTATGTGAACACTCACGGACCTTTGGTGATGGAGACG
AACACGTACCGATACTCTGGACACTCCATGTCCGATCCGGGCACATCGTA
CCGCACACGCGAGGAGATCCAGGAGGTGCGCCAGAAGCGTGATCCCATCA
CCTCCTTCAAGGAGCTGTGCATCGAGCTGGGTCTGATTACCACCGATGAA
GTTAAGGCCATCGATCTGAAGGTACGCAAGGAGGTCGACGAGGCCACCGC
CTTCGCCAAGTCCGATGCCGAGCTGGGCGTGAGCCACCTCTGGACGGACG
TGTACTCCAACAATCTGGAGCCCAAGCTGCGCGGCACCATCGCCTACGAT
ATTGATCACATCCAGGAGCGCAAGGGCGTCAATCACTAAGTCATCGGGCC
AACGAATCTGATTCGGGAACTCACAAGAACCTTAAACGAAACAAGAAAAC
CGAACAGCAAACACAAATCACTGACAGACAGACAAGAAGACACAATAACT
CAGAAACTTGGACACAAGCGAAATCTCTAGATCATAAGCCGAAAGTTGAA
CGATGAGAACCCCGTAGAACGGAACGGATCCGAAGAGACCCACAAAAAGC
TTAGCTAATCGGAGCACTCCAACCACACATCGTAGCGCACCACATAACTC
TGGGGTACTGCATTGGATATTATATTGCGAACGTGTTCAATAAGGATAAA
GCGAGGTGTAAATTGTTGAAAATATAAAAATCTAGAAAAATTAATCCAAA
TTAGTTTTCTTAACAAAAGTGAATCAAGTATGTACTTTTGAAATGTGAAA
ATCTCAGTCTGTTTCACCTATACTTGCACTATAGAATTTTGATAGATTTA
TAAGATATTAATAAACGGAATAGATTTAATAGATAAAAAAAAAAAAAAAA

RH59152.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4597369..4598053 1355..2034 3315 99.3 Plus
chrX 22417052 chrX 4596337..4596903 468..1034 2760 99.1 Plus
chrX 22417052 chrX 4596977..4597301 1033..1357 1610 99.7 Plus
chrX 22417052 chrX 4595116..4595380 4..267 1260 99.2 Plus
chrX 22417052 chrX 4595476..4595675 263..468 890 96.6 Plus
chrX 22417052 chrX 4599247..4599578 923..1254 265 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4704586..4705267 1355..2036 3410 100 Plus
X 23542271 X 4703554..4704120 468..1034 2835 100 Plus
X 23542271 X 4704194..4704518 1033..1357 1625 100 Plus
X 23542271 X 4702328..4702591 4..267 1305 99.6 Plus
X 23542271 X 4702687..4702892 263..468 1015 99.5 Plus
X 23542271 X 4706459..4706790 923..1254 265 72 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4712684..4713365 1355..2036 3410 100 Plus
X 23527363 X 4711652..4712218 468..1034 2835 100 Plus
X 23527363 X 4712292..4712616 1033..1357 1625 100 Plus
X 23527363 X 4710426..4710689 4..267 1305 99.6 Plus
X 23527363 X 4710785..4710990 263..468 1015 99.5 Plus
X 23527363 X 4714557..4714627 923..993 160 81.6 Plus
Blast to na_te.dros performed on 2019-03-17 01:23:51 has no hits.

RH59152.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:24:33 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4596978..4597300 1034..1356 99 -> Plus
chrX 4595113..4595380 1..267 98 == Plus
chrX 4595566..4595675 359..468 100 -> Plus
chrX 4596338..4596902 469..1033 99 -> Plus
chrX 4597371..4598053 1357..2034 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:01:07 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 1..1332 208..1539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:37:51 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 1..1332 208..1539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:56:59 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 1..1332 208..1539 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:01:07 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 1..1854 39..1892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:37:51 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 2..2034 2..2034 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:56:59 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0334-RC 2..2034 2..2034 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:33 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702325..4702591 1..267 98 -> Plus
X 4702692..4702892 268..468 100 -> Plus
X 4703555..4704119 469..1033 100 -> Plus
X 4704195..4704517 1034..1356 100 -> Plus
X 4704588..4705265 1357..2034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:33 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702325..4702591 1..267 98 -> Plus
X 4702692..4702892 268..468 100 -> Plus
X 4703555..4704119 469..1033 100 -> Plus
X 4704195..4704517 1034..1356 100 -> Plus
X 4704588..4705265 1357..2034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:33 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
X 4702325..4702591 1..267 98 -> Plus
X 4702692..4702892 268..468 100 -> Plus
X 4703555..4704119 469..1033 100 -> Plus
X 4704195..4704517 1034..1356 100 -> Plus
X 4704588..4705265 1357..2034 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:37:51 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4596725..4596925 268..468 100 -> Plus
arm_X 4596358..4596624 1..267 98 -> Plus
arm_X 4597588..4598152 469..1033 100 -> Plus
arm_X 4598228..4598550 1034..1356 100 -> Plus
arm_X 4598621..4599298 1357..2034 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:48 Download gff for RH59152.complete
Subject Subject Range Query Range Percent Splice Strand
X 4710423..4710689 1..267 98 -> Plus
X 4710790..4710990 268..468 100 -> Plus
X 4711653..4712217 469..1033 100 -> Plus
X 4712293..4712615 1034..1356 100 -> Plus
X 4712686..4713363 1357..2034 100   Plus

RH59152.pep Sequence

Translation from 207 to 1538

> RH59152.pep
MLRTLSRVSELPIIVKQLQKRCHNNNNNNIIISGCRILSNNNNNSSIDII
RNGRYSSSFFGLFQNAAQAGVSKTNNYATEATVQVNRPFKLHRLDEGPAT
EVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAV
GMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGS
MHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQG
QVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGI
WVDGMDVLAVRSATEFAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRT
REEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVDEATAFA
KSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*

RH59152.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22274-PA 399 GF22274-PA 1..399 1..443 2042 86.9 Plus
Dana\GF15055-PA 403 GF15055-PA 41..399 83..439 1173 60.2 Plus
Dana\GF22275-PA 520 GF22275-PA 55..401 89..435 1144 58.8 Plus
Dana\GF18476-PA 439 GF18476-PA 128..412 144..421 281 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18722-PA 440 GG18722-PA 1..440 1..443 2334 98 Plus
Dere\GG18723-PA 480 GG18723-PA 43..390 89..436 1161 59.8 Plus
Dere\GG16874-PA 439 GG16874-PA 128..408 144..417 270 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12828-PA 399 GH12828-PA 1..399 1..443 1978 84 Plus
Dgri\GH20215-PA 513 GH20215-PA 31..384 81..434 1186 59.9 Plus
Dgri\GH18279-PA 439 GH18279-PA 127..412 143..421 298 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pdha-PC 443 CG7010-PC 1..443 1..443 2333 100 Plus
Pdha-PD 399 CG7010-PD 1..399 1..443 2042 90.1 Plus
Pdha-PA 399 CG7010-PA 1..399 1..443 2042 90.1 Plus
Pdha-PB 328 CG7010-PB 1..328 116..443 1744 100 Plus
CG7024-PA 479 CG7024-PA 43..390 89..436 1142 59.8 Plus
CG8199-PA 439 CG8199-PA 128..388 144..393 262 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14910-PA 399 GI14910-PA 1..399 1..443 1971 84.7 Plus
Dmoj\GI14124-PA 420 GI14124-PA 42..419 68..443 1260 60.1 Plus
Dmoj\GI14911-PA 461 GI14911-PA 6..353 87..434 1175 59.5 Plus
Dmoj\GI24087-PA 435 GI24087-PA 124..405 144..418 303 31.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13094-PA 399 GL13094-PA 1..399 1..443 2020 86 Plus
Dper\GL18702-PA 414 GL18702-PA 61..412 89..440 1205 64.2 Plus
Dper\GL13095-PA 540 GL13095-PA 58..410 82..434 1174 60.1 Plus
Dper\GL22326-PA 439 GL22326-PA 128..412 144..421 281 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20028-PA 399 GA20028-PA 1..399 1..443 2013 85.8 Plus
Dpse\GA25763-PA 414 GA25763-PA 61..412 89..440 1214 64.5 Plus
Dpse\GA20040-PA 533 GA20040-PA 58..410 82..434 1177 60.1 Plus
Dpse\GA20891-PA 439 GA20891-PA 128..412 144..421 281 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12361-PA 441 GM12361-PA 1..441 1..443 2339 99.1 Plus
Dsec\GM12362-PA 475 GM12362-PA 42..389 89..436 1170 59.8 Plus
Dsec\GM23814-PA 439 GM23814-PA 128..388 144..393 254 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16702-PA 392 GD16702-PA 1..392 1..443 2035 88 Plus
Dsim\GD16703-PA 476 GD16703-PA 43..390 89..436 1170 59.8 Plus
Dsim\GD18623-PA 439 GD18623-PA 128..388 144..393 255 30.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18942-PA 399 GJ18942-PA 1..399 1..443 1957 83.7 Plus
Dvir\GJ17759-PA 420 GJ17759-PA 58..419 83..443 1258 61.3 Plus
Dvir\GJ18943-PA 548 GJ18943-PA 46..399 81..434 1214 60.7 Plus
Dvir\GJ10905-PA 437 GJ10905-PA 126..405 144..416 285 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25306-PA 474 GK25306-PA 1..474 1..443 2067 82.9 Plus
Dwil\GK15549-PA 430 GK15549-PA 70..426 82..438 1248 63 Plus
Dwil\GK25307-PA 632 GK25307-PA 47..409 72..436 1175 58.4 Plus
Dwil\GK11824-PA 439 GK11824-PA 128..412 144..421 285 29.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16361-PA 438 GE16361-PA 1..438 1..443 2316 97.7 Plus
Dyak\GE16362-PA 485 GE16362-PA 43..390 89..436 1155 58.6 Plus
Dyak\GE25960-PA 439 GE25960-PA 128..409 144..418 271 29.8 Plus

RH59152.hyp Sequence

Translation from 207 to 1538

> RH59152.hyp
MLRTLSRVSELPIIVKQLQKRCHNNNNNNIIISGCRILSNNNNNSSIDII
RNGRYSSSFFGLFQNAAQAGVSKTNNYATEATVQVNRPFKLHRLDEGPAT
EVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAV
GMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGS
MHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQG
QVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGI
WVDGMDVLAVRSATEFAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRT
REEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVDEATAFA
KSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*

RH59152.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0334-PC 443 CG7010-PC 1..443 1..443 2333 100 Plus
l(1)G0334-PD 399 CG7010-PD 1..399 1..443 2042 90.1 Plus
l(1)G0334-PA 399 CG7010-PA 1..399 1..443 2042 90.1 Plus
l(1)G0334-PB 328 CG7010-PB 1..328 116..443 1744 100 Plus
CG7024-PA 479 CG7024-PA 43..390 89..436 1142 59.8 Plus