BDGP Sequence Production Resources |
Search the DGRC for RH59219
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 592 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3176-RA |
Protein status: | RH59219.pep: gold |
Preliminary Size: | 366 |
Sequenced Size: | 534 |
Gene | Date | Evidence |
---|---|---|
CG3176 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3176 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3176 | 2008-04-29 | Release 5.5 accounting |
CG3176 | 2008-08-15 | Release 5.9 accounting |
CG3176 | 2008-12-18 | 5.12 accounting |
534 bp (534 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113606
> RH59219.complete GATTGCAATTTGGAAATTTTAAGGGTTCTGATTGCACTTCTCGCTGACCT CAAACAAATCAAAGAAGACAATCAAAATGCTTTTCGATGGCGAAACCGGC AATGGGCAAGGTCAGGGCCAGAATACCCTGAATCCATTGGGGCCAGGCCA GGAGGAGCCCGCCCTATGCGAGCAGTACTATCTGCTGGGCGATGGTTCCA TCATTCTGCGCAACCATTCCATCGACTTGTCGAATCCGCCCCTGAAATCG CGCTGCTGCCAGCTCCCAACACTCATCCACGACATATGCGTCAACTGCGT GATGGATCTCTGCGAGGAGTGTGGCTACTCCTGCGGCGAGTGCGCCAAGT TTATTTGCCGCAACTGCGTGACTTTATTTGGTAATCGAATTGAAGAAGAG GAGGATCCGCTGTGCGAGCACTGCCAGATGTTCCTCAGCTAGGGCATCAA ACAATCAAGCAAATGTCAAATGTATTACGTTTTAAAGAATATAGAGCTAT ATAGTATTTAACATTAGACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 376151..376466 | 63..378 | 1580 | 100 | Plus |
chrX | 22417052 | chrX | 373663..373978 | 63..378 | 1550 | 99.4 | Plus |
chrX | 22417052 | chrX | 371640..371964 | 63..378 | 1095 | 89.8 | Plus |
chrX | 22417052 | chrX | 376551..376689 | 379..517 | 695 | 100 | Plus |
chrX | 22417052 | chrX | 374063..374200 | 379..516 | 675 | 99.3 | Plus |
chrX | 22417052 | chrX | 373482..373542 | 2..62 | 305 | 100 | Plus |
chrX | 22417052 | chrX | 375970..376030 | 2..62 | 305 | 100 | Plus |
chrX | 22417052 | chrX | 372046..372128 | 379..461 | 280 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 482118..482433 | 63..378 | 1580 | 100 | Plus |
X | 23542271 | X | 479630..479945 | 63..378 | 1550 | 99.4 | Plus |
X | 23542271 | X | 477607..477931 | 63..378 | 1095 | 89.8 | Plus |
X | 23542271 | X | 482518..482663 | 379..524 | 715 | 99.3 | Plus |
X | 23542271 | X | 480030..480175 | 379..524 | 685 | 97.9 | Plus |
X | 23542271 | X | 479449..479509 | 2..62 | 305 | 100 | Plus |
X | 23542271 | X | 481937..481997 | 2..62 | 305 | 100 | Plus |
X | 23542271 | X | 478013..478095 | 379..461 | 280 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 490216..490531 | 63..378 | 1580 | 100 | Plus |
X | 23527363 | X | 487728..488043 | 63..378 | 1550 | 99.3 | Plus |
X | 23527363 | X | 490616..490761 | 379..524 | 715 | 99.3 | Plus |
X | 23527363 | X | 488128..488273 | 379..524 | 685 | 97.9 | Plus |
X | 23527363 | X | 485705..485886 | 63..244 | 655 | 90.6 | Plus |
X | 23527363 | X | 485894..486029 | 243..378 | 575 | 94.8 | Plus |
X | 23527363 | X | 490035..490095 | 2..62 | 305 | 100 | Plus |
X | 23527363 | X | 487547..487607 | 2..62 | 305 | 100 | Plus |
X | 23527363 | X | 486111..486193 | 379..461 | 280 | 89.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 375969..376030 | 1..62 | 98 | -> | Plus |
chrX | 376151..376466 | 63..378 | 100 | -> | Plus |
chrX | 376551..376691 | 379..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..366 | 77..442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..366 | 77..442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..366 | 77..442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..366 | 77..442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..366 | 77..442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 77..595 | 1..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 75..593 | 1..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..517 | 3..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 2..519 | 2..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3176-RA | 1..517 | 3..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 481936..481997 | 1..62 | 98 | -> | Plus |
X | 482118..482433 | 63..378 | 100 | -> | Plus |
X | 482518..482658 | 379..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 481936..481997 | 1..62 | 98 | -> | Plus |
X | 482118..482433 | 63..378 | 100 | -> | Plus |
X | 482518..482658 | 379..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 481936..481997 | 1..62 | 98 | -> | Plus |
X | 482118..482433 | 63..378 | 100 | -> | Plus |
X | 482518..482658 | 379..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 375969..376030 | 1..62 | 98 | -> | Plus |
arm_X | 376151..376466 | 63..378 | 100 | -> | Plus |
arm_X | 376551..376691 | 379..519 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 490216..490531 | 63..378 | 100 | -> | Plus |
X | 490616..490756 | 379..519 | 99 | Plus | |
X | 490034..490095 | 1..62 | 98 | -> | Plus |
Translation from 0 to 383
> RH59219.hyp HCNLEILRVLIALLADLKQIKEDNQNAFRWRNRQWARSGPEYPESIGARP GGARPMRAVLSAGRWFHHSAQPFHRLVESAPEIALLPAPNTHPRHMRQLR DGSLRGVWLLLRRVRQVYLPQLRDFIW*
Translation from 76 to 441
> RH59219.pep MLFDGETGNGQGQGQNTLNPLGPGQEEPALCEQYYLLGDGSIILRNHSID LSNPPLKSRCCQLPTLIHDICVNCVMDLCEECGYSCGECAKFICRNCVTL FGNRIEEEEDPLCEHCQMFLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21455-PA | 230 | GF21455-PA | 136..230 | 30..121 | 360 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12788-PA | 389 | GG12788-PA | 285..389 | 20..121 | 430 | 76.2 | Plus |
Dere\GG12787-PA | 121 | GG12787-PA | 17..121 | 20..121 | 413 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24415-PA | 114 | GH24415-PA | 3..114 | 13..121 | 304 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3176-PD | 121 | CG3176-PD | 1..121 | 1..121 | 683 | 100 | Plus |
CG3176-PA | 121 | CG3176-PA | 1..121 | 1..121 | 683 | 100 | Plus |
CG32817-PB | 121 | CG32817-PB | 1..121 | 1..121 | 664 | 97.5 | Plus |
CG32817-PC | 121 | CG32817-PC | 1..121 | 1..121 | 664 | 97.5 | Plus |
CG32817-PA | 121 | CG32817-PA | 1..121 | 1..121 | 664 | 97.5 | Plus |
CG3176-PC | 101 | CG3176-PC | 1..100 | 1..100 | 564 | 100 | Plus |
CG3176-PB | 101 | CG3176-PB | 1..100 | 1..100 | 564 | 100 | Plus |
CG13373-PA | 124 | CG13373-PA | 1..124 | 1..121 | 557 | 81.5 | Plus |
CG13373-PB | 177 | CG13373-PB | 54..177 | 1..121 | 557 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16312-PA | 176 | GI16312-PA | 50..176 | 1..121 | 324 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20383-PA | 78 | GL20383-PA | 2..78 | 48..121 | 247 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12237-PA | 143 | GA12237-PA | 27..141 | 4..119 | 292 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16244-PA | 122 | GM16244-PA | 1..122 | 1..121 | 537 | 86.9 | Plus |
Dsec\GM16243-PA | 122 | GM16243-PA | 1..122 | 1..121 | 537 | 86.9 | Plus |
Dsec\GM19067-PA | 122 | GM19067-PA | 1..122 | 1..121 | 537 | 86.9 | Plus |
Dsec\GM19066-PA | 234 | GM19066-PA | 54..157 | 1..101 | 440 | 79.8 | Plus |
Dsec\GM23227-PA | 104 | GM23227-PA | 1..96 | 1..95 | 417 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16505-PA | 177 | GD16505-PA | 54..177 | 1..121 | 532 | 79.8 | Plus |
Dsim\GD16506-PA | 122 | GD16506-PA | 1..122 | 1..121 | 488 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15649-PA | 207 | GJ15649-PA | 113..207 | 30..121 | 331 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15991-PA | 180 | GK15991-PA | 50..178 | 1..119 | 316 | 53.5 | Plus |
Dwil\GK15987-PA | 158 | GK15987-PA | 59..158 | 28..121 | 280 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16613-PA | 324 | GE16613-PA | 226..324 | 26..121 | 398 | 74.7 | Plus |