Clone RH59310 Report

Search the DGRC for RH59310

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:593
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG1444-RA
Protein status:RH59310.pep: gold
Preliminary Size:1537
Sequenced Size:1759

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1444 2002-01-01 Sim4 clustering to Release 2
CG1444 2002-06-10 Blastp of sequenced clone
CG1444 2003-01-01 Sim4 clustering to Release 3
CG1444 2008-04-29 Release 5.5 accounting
CG1444 2008-08-15 Release 5.9 accounting
CG1444 2008-12-18 5.12 accounting

Clone Sequence Records

RH59310.complete Sequence

1759 bp (1759 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121708

> RH59310.complete
GACACCCCTCTGAGGGGGGCACATGGATACGAAAAAGAACCGTTCATTTG
CTTTTGTGCCGTTGACAATTGACATTCAATCGCTTTTTCCATTTGTTTTT
ATTTTCCCCCTTCTACCCTAAGTTTCTCCTTTCAAAGAAAACGCATTTGG
AATACAAATCAGGCAAAAAACACGCGTACATAAATCGAGTAATCGAAAAT
CAGTGGCGATTTCGAAGGGTGTGTGTGTGTGTAGAATTACTACAACACAC
CACAAATACAGTTCGAAAAGGCAGCGCAGTCGGCAGAGGCGAAAAAAAAG
CAGCGGCGTCAGCATTTCCATTTCGGCATTGCAGCTCGAAAATCGTAGAA
TCAGAAACTAATCAGCCGGCAGAGGCTATAGCAGTCGACCGATCGCAATC
GCACCATATAGTACATACAATAGGTACCATTGCCTAGGAGTACCAGGAAC
CAGGAACCACTAATCTCCATCATCAACATCATGGAGGAGAACAACTCGCA
AGTGCTGAGCCTGCTGGGCGGTCTGGCCATCGGAATCGTGGGCTTCCAGG
TCTTCCGGAAGGTCCTGCCCTGGATTTACGCCAATGTTGTTGGCCCCAAG
GTCTTTGGCTCCTCGGTGGATCTCTCCAAAATGGGCGAGTGGGCAGTTGT
CACCGGGTCGACCGATGGAATTGGCAAGGCCTACGCCAAGGAGTTGGCTC
GCAGGGGCTTGAAACTGGTGCTGATTAGTAGATCCCTGGAGAAACTGAAT
GTGGTGGCCAAGGAGATAGGCGATAAATACGGTGTGGAGGTGCGTGTGAT
CGATGTGGACTTCACCGGCGGTGACGAGATCTACGATAAGATCCGCGAAA
AGACCACTGGCCTCAATGTCGGAGTGCTGGTCAACAACGTGGGCATCAGC
TACGGCCATCCCGAGTACTTTCTGGACTGCTACAAAGCCGATCCCCCATT
CCTGCGCAACATTGTGGCTGCCAATATCCACTCGGTGACGCACATGACCG
CACTTTTTCTACCCGGCATGATTAGCCAGCGACGTGGTGTGATCATAAAT
GTATCGTCCACCGCCGGAGTCATTCCTAATCCGCTGCTGAGCGTGTACAG
TTCCACCAAGGCCTTTGTGAACAAATTCAGTGATGACCTGCAGACGGAGT
ACAAGGAGCACGGCATCCTCATCCAGAGCGTCCAGCCGGGCTTTGTGGCC
ACAAATATGTCTAAGATCCGAAAGGCTAGCGTGTTTGCTCCCTCGCCGGA
AACGTATGTCCGCTCGGCGCTGTCCACCCTGGGCATTGCCACCCAGACGG
CGGGCTATCTGCCGCATGCTCTACTCCAGCTGGTCATCCACTTCACGGAG
GCGGTGTTCGGCGAACAGTTCGCACGCAACATCGTTATGAAGAACATCCT
GGGCACCCGGAAACGTGCCCTGCGCCGCCTGGCCAAGGAACAGTAGATTA
TTGAGGATGAATACGGCGGAGGAGGCATTTAATGGGAATCGGTTGGGATG
ATGAGTGGGTCAGTTGGGTTGTGGGGAAAATCCGGCTAGTCAAATAGCTT
ACGTAATTACCGCGTGTCATACGAATCCACAAACAGATAGCTTGAAATAC
CAAAAAAAAAACATTTTTCCGAAATAAACTAAGTTTAGTTAGTTTTTGTC
ATTAATTAGCATTGAAGATTCGCAAACAGCCATGTCATGTAAACAATAAA
AAATGTGTTACTAGATATATGTATATATCTAGTTTCCAATGATAAAAAAA
AAAAAAAAA

RH59310.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-RA 1809 CG1444-RA 63..1808 2..1746 8690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7800792..7801436 2..646 3210 99.8 Plus
chrX 22417052 chrX 7803149..7803784 1109..1743 3130 99.8 Plus
chrX 22417052 chrX 7802750..7803093 768..1111 1720 100 Plus
chrX 22417052 chrX 7802606..7802684 692..770 395 100 Plus
chrX 22417052 chrX 7801774..7801823 644..693 250 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7908893..7909537 2..646 3225 100 Plus
X 23542271 X 7911250..7911888 1109..1746 3145 99.8 Plus
X 23542271 X 7910851..7911194 768..1111 1720 100 Plus
X 23542271 X 7910707..7910785 692..770 395 100 Plus
X 23542271 X 7909875..7909924 644..693 250 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7916991..7917635 2..646 3225 100 Plus
X 23527363 X 7919348..7919986 1109..1746 3155 99.8 Plus
X 23527363 X 7918949..7919292 768..1111 1720 100 Plus
X 23527363 X 7918805..7918883 692..770 395 100 Plus
X 23527363 X 7917973..7918022 644..693 250 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:43:08 has no hits.

RH59310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:43:56 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7802752..7803092 770..1110 100 -> Plus
chrX 7800791..7801436 1..646 99 -> Plus
chrX 7801777..7801823 647..693 100 -> Plus
chrX 7802608..7802683 694..769 100 -> Plus
chrX 7803151..7803784 1111..1743 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:50:54 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 481..1446 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:37 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 481..1446 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:47:20 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 481..1446 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:05 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 481..1446 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:31:48 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..966 481..1446 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:32 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 2..1744 2..1743 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:37 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 2..1744 2..1743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:47:20 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..1705 40..1743 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:16:05 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 2..1744 2..1743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:48 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
CG1444-RA 1..1705 40..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:56 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7908892..7909537 1..646 99 -> Plus
X 7909878..7909924 647..693 100 -> Plus
X 7910709..7910784 694..769 100 -> Plus
X 7910853..7911193 770..1110 100 -> Plus
X 7911252..7911885 1111..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:56 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7908892..7909537 1..646 99 -> Plus
X 7909878..7909924 647..693 100 -> Plus
X 7910709..7910784 694..769 100 -> Plus
X 7910853..7911193 770..1110 100 -> Plus
X 7911252..7911885 1111..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:56 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7908892..7909537 1..646 99 -> Plus
X 7909878..7909924 647..693 100 -> Plus
X 7910709..7910784 694..769 100 -> Plus
X 7910853..7911193 770..1110 100 -> Plus
X 7911252..7911885 1111..1743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:47:20 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7802925..7803570 1..646 99 -> Plus
arm_X 7803911..7803957 647..693 100 -> Plus
arm_X 7804742..7804817 694..769 100 -> Plus
arm_X 7804886..7805226 770..1110 100 -> Plus
arm_X 7805285..7805918 1111..1743 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:21 Download gff for RH59310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7918951..7919291 770..1110 100 -> Plus
X 7916990..7917635 1..646 99 -> Plus
X 7917976..7918022 647..693 100 -> Plus
X 7918807..7918882 694..769 100 -> Plus
X 7919350..7919983 1111..1743 99   Plus

RH59310.pep Sequence

Translation from 480 to 1445

> RH59310.pep
MEENNSQVLSLLGGLAIGIVGFQVFRKVLPWIYANVVGPKVFGSSVDLSK
MGEWAVVTGSTDGIGKAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKY
GVEVRVIDVDFTGGDEIYDKIREKTTGLNVGVLVNNVGISYGHPEYFLDC
YKADPPFLRNIVAANIHSVTHMTALFLPGMISQRRGVIINVSSTAGVIPN
PLLSVYSSTKAFVNKFSDDLQTEYKEHGILIQSVQPGFVATNMSKIRKAS
VFAPSPETYVRSALSTLGIATQTAGYLPHALLQLVIHFTEAVFGEQFARN
IVMKNILGTRKRALRRLAKEQ*

RH59310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21190-PA 318 GF21190-PA 2..318 5..321 1538 90.2 Plus
Dana\GF14540-PA 341 GF14540-PA 66..302 48..281 523 44.6 Plus
Dana\GF14539-PA 312 GF14539-PA 45..275 50..279 410 39.7 Plus
Dana\GF14538-PA 302 GF14538-PA 47..279 50..281 358 37.2 Plus
Dana\GF22046-PA 251 GF22046-PA 9..188 56..245 205 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19668-PA 321 GG19668-PA 1..321 1..321 1640 96.6 Plus
Dere\GG21768-PA 339 GG21768-PA 23..300 6..281 539 41.7 Plus
Dere\GG21767-PA 302 GG21767-PA 6..278 6..279 410 34.9 Plus
Dere\GG21766-PA 342 GG21766-PA 43..312 50..279 342 33.1 Plus
Dere\GG12469-PA 321 GG12469-PA 16..241 17..242 217 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24302-PA 320 GH24302-PA 2..320 3..321 1412 82.4 Plus
Dgri\GH13773-PA 335 GH13773-PA 23..329 6..306 492 37.2 Plus
Dgri\GH13771-PA 311 GH13771-PA 49..281 50..281 396 39.1 Plus
Dgri\GH22973-PA 257 GH22973-PA 10..194 56..245 171 29.9 Plus
Dgri\GH13989-PA 326 GH13989-PA 53..244 52..244 171 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
spidey-PA 321 CG1444-PA 1..321 1..321 1617 100 Plus
CG13284-PE 325 CG13284-PE 9..286 6..281 523 42 Plus
CG13284-PA 325 CG13284-PA 9..286 6..281 523 42 Plus
CG13284-PC 338 CG13284-PC 22..299 6..281 523 42 Plus
CG13284-PD 339 CG13284-PD 23..300 6..281 523 42 Plus
CG13284-PB 339 CG13284-PB 23..300 6..281 523 42 Plus
CG31809-PC 316 CG31809-PC 46..277 50..281 509 46.2 Plus
CG31809-PB 316 CG31809-PB 46..277 50..281 509 46.2 Plus
CG31810-PA 324 CG31810-PA 54..285 50..281 509 46.2 Plus
CG6012-PA 308 CG6012-PA 47..278 50..279 385 38 Plus
CG13833-PA 321 CG13833-PA 40..241 40..242 210 29 Plus
CG3699-PA 251 CG3699-PA 1..188 48..245 208 30.5 Plus
CG31546-PA 264 CG31546-PA 13..201 52..245 194 33.5 Plus
CG3603-PB 249 CG3603-PB 8..217 52..268 185 26.7 Plus
CG3603-PA 249 CG3603-PA 8..217 52..268 185 26.7 Plus
CG12171-PA 257 CG12171-PA 10..194 56..245 181 27.8 Plus
CG31549-PB 257 CG31549-PB 10..194 56..245 181 28.9 Plus
CG31549-PA 257 CG31549-PA 10..194 56..245 181 28.9 Plus
CG31937-PA 321 CG31937-PA 39..237 46..242 166 31.9 Plus
CG7601-PA 326 CG7601-PA 53..244 52..244 163 25 Plus
CG15629-PA 325 CG15629-PA 35..246 28..243 159 27.6 Plus
CG17121-PA 361 CG17121-PA 92..261 52..225 156 28.7 Plus
Pdh-PA 278 CG4899-PA 14..224 44..259 152 28.3 Plus
Pdh-PC 261 CG4899-PC 1..207 48..259 149 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21544-PA 320 GI21544-PA 2..320 3..321 1408 81.2 Plus
Dmoj\GI17177-PA 335 GI17177-PA 23..329 6..306 494 36.5 Plus
Dmoj\GI17176-PA 310 GI17176-PA 49..279 50..279 392 38.4 Plus
Dmoj\GI14997-PA 255 GI14997-PA 9..190 56..243 206 31.1 Plus
Dmoj\GI10766-PA 283 GI10766-PA 19..203 57..242 174 28.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18340-PA 320 GL18340-PA 2..320 3..321 1496 87.1 Plus
Dper\GL19326-PA 344 GL19326-PA 66..304 48..281 442 39.3 Plus
Dper\GL19325-PA 305 GL19325-PA 5..278 6..279 416 37 Plus
Dper\GL14417-PA 255 GL14417-PA 9..192 56..245 203 31.2 Plus
Dper\GL27358-PA 319 GL27358-PA 38..239 40..242 191 29 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12987-PA 320 GA12987-PA 2..320 3..321 1499 87.5 Plus
Dpse\GA12171-PA 340 GA12171-PA 66..300 48..281 493 41.6 Plus
Dpse\GA19294-PA 305 GA19294-PA 48..278 50..279 410 39.7 Plus
Dpse\GA17622-PA 255 GA17622-PA 9..192 56..245 203 31.2 Plus
Dpse\GA12556-PA 319 GA12556-PA 38..239 40..242 199 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11981-PA 321 GM11981-PA 1..321 1..321 1659 98.1 Plus
Dsec\GM17152-PA 339 GM17152-PA 23..300 6..281 539 41.7 Plus
Dsec\GM17150-PA 450 GM17150-PA 6..278 6..279 380 34.2 Plus
Dsec\GM23600-PA 321 GM23600-PA 40..241 40..242 220 30.9 Plus
Dsec\GM19006-PA 251 GM19006-PA 9..188 56..245 202 31.2 Plus
Dsec\GM17150-PA 450 GM17150-PA 335..432 48..186 196 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16868-PA 321 GD16868-PA 1..321 1..321 1659 98.1 Plus
Dsim\GD21891-PA 305 GD21891-PA 13..303 22..315 540 41.3 Plus
Dsim\GD21890-PA 308 GD21890-PA 6..278 6..279 375 34.2 Plus
Dsim\GD18413-PA 321 GD18413-PA 40..241 40..242 216 30.4 Plus
Dsim\GD16445-PA 251 GD16445-PA 9..188 56..245 202 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15689-PA 320 GJ15689-PA 2..320 3..321 1469 85 Plus
Dvir\GJ17421-PA 335 GJ17421-PA 23..329 6..306 501 38.1 Plus
Dvir\GJ17420-PA 312 GJ17420-PA 6..279 6..279 418 36.2 Plus
Dvir\GJ15354-PA 255 GJ15354-PA 1..190 48..243 171 28.3 Plus
Dvir\GJ14366-PA 321 GJ14366-PA 51..253 51..252 171 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10112-PA 320 GK10112-PA 2..320 3..321 1468 84 Plus
Dwil\GK18151-PA 340 GK18151-PA 67..308 48..288 493 42 Plus
Dwil\GK11524-PA 314 GK11524-PA 48..287 48..286 488 42.4 Plus
Dwil\GK18149-PA 311 GK18149-PA 6..279 6..279 405 36.3 Plus
Dwil\GK18150-PA 300 GK18150-PA 6..279 6..279 399 34.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15745-PA 321 GE15745-PA 1..321 1..321 1659 97.8 Plus
Dyak\GE13158-PA 339 GE13158-PA 23..300 6..281 542 42 Plus
Dyak\GE13157-PA 302 GE13157-PA 47..278 50..279 412 38.8 Plus
Dyak\GE13156-PA 308 GE13156-PA 47..278 50..279 409 38.8 Plus
Dyak\GE23993-PA 321 GE23993-PA 16..241 17..242 215 30 Plus

RH59310.hyp Sequence

Translation from 480 to 1445

> RH59310.hyp
MEENNSQVLSLLGGLAIGIVGFQVFRKVLPWIYANVVGPKVFGSSVDLSK
MGEWAVVTGSTDGIGKAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKY
GVEVRVIDVDFTGGDEIYDKIREKTTGLNVGVLVNNVGISYGHPEYFLDC
YKADPPFLRNIVAANIHSVTHMTALFLPGMISQRRGVIINVSSTAGVIPN
PLLSVYSSTKAFVNKFSDDLQTEYKEHGILIQSVQPGFVATNMSKIRKAS
VFAPSPETYVRSALSTLGIATQTAGYLPHALLQLVIHFTEAVFGEQFARN
IVMKNILGTRKRALRRLAKEQ*

RH59310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1444-PA 321 CG1444-PA 1..321 1..321 1617 100 Plus
CG13284-PE 325 CG13284-PE 9..286 6..281 523 42 Plus
CG13284-PA 325 CG13284-PA 9..286 6..281 523 42 Plus
CG13284-PC 338 CG13284-PC 22..299 6..281 523 42 Plus
CG13284-PD 339 CG13284-PD 23..300 6..281 523 42 Plus