BDGP Sequence Production Resources |
Search the DGRC for RH60845
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 608 |
Well: | 45 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fok-RA |
Protein status: | RH60845.pep: gold |
Preliminary Size: | 1306 |
Sequenced Size: | 1219 |
Gene | Date | Evidence |
---|---|---|
CG10746 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10746 | 2002-04-26 | Blastp of sequenced clone |
CG10746 | 2003-01-01 | Sim4 clustering to Release 3 |
fok | 2008-04-29 | Release 5.5 accounting |
fok | 2008-08-15 | Release 5.9 accounting |
fok | 2008-12-18 | 5.12 accounting |
1219 bp (1219 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113608
> RH60845.complete GTTCAGTTTCACGAGAGACCTCCAACAGAATACATCGAATTTCGGCGAGA GATTTGCAGCTCAAGAAGAAGAAAGAAGGAAAACCTCTGCGAGTCACCTC CACGCAAAAGTGCACCAAAAAGCGTTGTTAAAAAAACAAAACAAAGTGAT TTTAAAAGCCAGGTTCATTGGACGCCCGAGCCAATCGAGAGACAAAGTGA AACGACCTCGCACAACGCGCGCAAAAAGAGAGAAAGAAAGAAAAACACAC ACCCACATTACAAACACAATTCACATCCCGTTGATTGGCACTGCAGTTCG CAAAAATAGTAACGAAACACCGCACAGCACAGACATGGATGTTTGGGGAT TCTGCGTCAGCGACACCACAATGGCATATGGCGGGTCCATGCGCAGCGGC TACTACCGCGACTACGAGGAGTTCCCCTATGGTACCCTGGAGTCCACCAC TTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGAAAAGTGCA AGCAGATAAAGTCCGAGAAGCAGATGCGCAAGGACTGCCCATTCTGCAAG GAGCACAAGAAGCGGCCGCTCATCAACTACATGCGCAAGCGGGAGCAAAG GAAGCACCATGACAGCATCTGCGAGGACGAGGAGGACATGCACGAGCACG AGCATGAGCTGGAGCACACCCACAATCACAGCCAGTCGACCGTCCTTGCC GCCCCGCAAAGCTGCAAGGTGTGAGTGGGAGCGAGACGAATCTACTGCGG ACGGTGCCCGCAGCATTCGCGAAATGCCATATATGTATACAGATGTGTAA CCTAACCCAGAAGAAAGGAAACCTGAAAGAGTAAGAACAAAAACAAAAAC AAAGAAAACCCGAGGAGAAAAGAGAAAAAGCTGTCGAAGACGAAGATTGC GCGAGAGAGCGAGACAGCAGCCTGCAGCTACAATAATCTAAGGCAACTGT ACCCCTATTTTTTTTAAAATGGTTGCCCAGCATTTCCGCGTTGCGAATAC ACTACCATTTACAAAAGCCAGAACCACTTGATACCAATTTACAACTACCT TTTTCATTATCTAGCCCTTCGTTTTTACACCAACTTCGCAGTTATGTACA ACTACAAACGGCACTTTGTTTACCGACAAACAATAGCGCACGACGAAAAA ATCAAGTAACGAAAACCTGCCCCGCTTGACCAACGCATTTTTTGACCTTA GGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tabor | 7345 | Tabor TABOR 7345bp | 1825..1879 | 844..898 | 131 | 70.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20080674..20081386 | 492..1203 | 99 | <- | Minus |
chr2L | 20082949..20083438 | 1..491 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..390 | 335..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RC | 1..390 | 335..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..390 | 335..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..390 | 335..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..390 | 335..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..1202 | 2..1203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RC | 1..1199 | 5..1203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 3..1205 | 1..1203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 1..1202 | 2..1203 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fok-RA | 3..1205 | 1..1203 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20082304..20083015 | 492..1203 | 100 | <- | Minus |
2L | 20084578..20085067 | 1..491 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20082304..20083015 | 492..1203 | 100 | <- | Minus |
2L | 20084578..20085067 | 1..491 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20082304..20083015 | 492..1203 | 100 | <- | Minus |
2L | 20084578..20085067 | 1..491 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20082304..20083015 | 492..1203 | 100 | <- | Minus |
arm_2L | 20084578..20085067 | 1..491 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20082304..20083015 | 492..1203 | 100 | <- | Minus |
2L | 20084578..20085067 | 1..491 | 99 | Minus |
Translation from 0 to 723
> RH60845.hyp FSFTRDLQQNTSNFGERFAAQEEERRKTSASHLHAKVHQKALLKKQNKVI LKARFIGRPSQSRDKVKRPRTTRAKREKERKTHTHITNTIHIPLIGTAVR KNSNETPHSTDMDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTT SSHAVKDCYSRVQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQR KHHDSICEDEEDMHEHEHELEHTHNHSQSTVLAAPQSCKV*
Translation from 334 to 723
> RH60845.pep MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE DMHEHEHELEHTHNHSQSTVLAAPQSCKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15456-PA | 137 | GF15456-PA | 1..137 | 1..129 | 517 | 76.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21590-PA | 127 | GG21590-PA | 1..127 | 1..129 | 662 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13240-PA | 133 | GH13240-PA | 1..133 | 1..129 | 428 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fok-PC | 129 | CG43690-PC | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PA | 129 | CG43690-PA | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PD | 103 | CG43690-PD | 1..81 | 1..90 | 292 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12517-PA | 130 | GI12517-PA | 1..130 | 1..129 | 440 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26672-PA | 133 | GL26672-PA | 1..133 | 1..129 | 451 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29011-PA | 133 | GA29011-PA | 1..133 | 1..129 | 451 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16964-PA | 129 | GM16964-PA | 1..129 | 1..129 | 687 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21716-PA | 129 | GD21716-PA | 1..129 | 1..129 | 690 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17890-PA | 136 | GJ17890-PA | 1..136 | 1..129 | 445 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23806-PA | 130 | GK23806-PA | 1..96 | 1..96 | 461 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\fok-PA | 129 | GE12608-PA | 1..129 | 1..129 | 685 | 98.4 | Plus |