Clone RH60845 Report

Search the DGRC for RH60845

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:608
Well:45
Vector:pFlc-1
Associated Gene/Transcriptfok-RA
Protein status:RH60845.pep: gold
Preliminary Size:1306
Sequenced Size:1219

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10746 2002-01-01 Sim4 clustering to Release 2
CG10746 2002-04-26 Blastp of sequenced clone
CG10746 2003-01-01 Sim4 clustering to Release 3
fok 2008-04-29 Release 5.5 accounting
fok 2008-08-15 Release 5.9 accounting
fok 2008-12-18 5.12 accounting

Clone Sequence Records

RH60845.complete Sequence

1219 bp (1219 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113608

> RH60845.complete
GTTCAGTTTCACGAGAGACCTCCAACAGAATACATCGAATTTCGGCGAGA
GATTTGCAGCTCAAGAAGAAGAAAGAAGGAAAACCTCTGCGAGTCACCTC
CACGCAAAAGTGCACCAAAAAGCGTTGTTAAAAAAACAAAACAAAGTGAT
TTTAAAAGCCAGGTTCATTGGACGCCCGAGCCAATCGAGAGACAAAGTGA
AACGACCTCGCACAACGCGCGCAAAAAGAGAGAAAGAAAGAAAAACACAC
ACCCACATTACAAACACAATTCACATCCCGTTGATTGGCACTGCAGTTCG
CAAAAATAGTAACGAAACACCGCACAGCACAGACATGGATGTTTGGGGAT
TCTGCGTCAGCGACACCACAATGGCATATGGCGGGTCCATGCGCAGCGGC
TACTACCGCGACTACGAGGAGTTCCCCTATGGTACCCTGGAGTCCACCAC
TTCCTCACACGCGGTCAAGGACTGCTACAGTCGAGTGCAAGAAAAGTGCA
AGCAGATAAAGTCCGAGAAGCAGATGCGCAAGGACTGCCCATTCTGCAAG
GAGCACAAGAAGCGGCCGCTCATCAACTACATGCGCAAGCGGGAGCAAAG
GAAGCACCATGACAGCATCTGCGAGGACGAGGAGGACATGCACGAGCACG
AGCATGAGCTGGAGCACACCCACAATCACAGCCAGTCGACCGTCCTTGCC
GCCCCGCAAAGCTGCAAGGTGTGAGTGGGAGCGAGACGAATCTACTGCGG
ACGGTGCCCGCAGCATTCGCGAAATGCCATATATGTATACAGATGTGTAA
CCTAACCCAGAAGAAAGGAAACCTGAAAGAGTAAGAACAAAAACAAAAAC
AAAGAAAACCCGAGGAGAAAAGAGAAAAAGCTGTCGAAGACGAAGATTGC
GCGAGAGAGCGAGACAGCAGCCTGCAGCTACAATAATCTAAGGCAACTGT
ACCCCTATTTTTTTTAAAATGGTTGCCCAGCATTTCCGCGTTGCGAATAC
ACTACCATTTACAAAAGCCAGAACCACTTGATACCAATTTACAACTACCT
TTTTCATTATCTAGCCCTTCGTTTTTACACCAACTTCGCAGTTATGTACA
ACTACAAACGGCACTTTGTTTACCGACAAACAATAGCGCACGACGAAAAA
ATCAAGTAACGAAAACCTGCCCCGCTTGACCAACGCATTTTTTGACCTTA
GGCAAAAAAAAAAAAAAAA

RH60845.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RA 1428 fok-RA 170..1387 2..1219 6090 100 Plus
fok.e 2687 fok.e 710..1927 2..1219 6090 100 Plus
fok.d 2393 fok.d 416..1633 2..1219 6090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20080674..20081388 1203..490 3525 99.9 Minus
chr2L 23010047 chr2L 20082949..20083438 491..2 2450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082288..20083017 1219..490 3650 100 Minus
2L 23513712 2L 20084578..20085067 491..2 2450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082288..20083017 1219..490 3650 100 Minus
2L 23513712 2L 20084578..20085067 491..2 2450 100 Minus
Blast to na_te.dros performed 2019-03-15 20:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 1825..1879 844..898 131 70.9 Plus

RH60845.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:34 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20080674..20081386 492..1203 99 <- Minus
chr2L 20082949..20083438 1..491 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:01 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 335..724 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:54:39 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RC 1..390 335..724 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:10:13 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 335..724 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:47:06 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 335..724 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:41:08 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 335..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:33:29 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..1202 2..1203 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:54:39 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RC 1..1199 5..1203 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:10:13 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 3..1205 1..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:47:06 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..1202 2..1203 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:08 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 3..1205 1..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:34 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082304..20083015 492..1203 100 <- Minus
2L 20084578..20085067 1..491 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:34 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082304..20083015 492..1203 100 <- Minus
2L 20084578..20085067 1..491 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:34 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082304..20083015 492..1203 100 <- Minus
2L 20084578..20085067 1..491 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:10:13 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082304..20083015 492..1203 100 <- Minus
arm_2L 20084578..20085067 1..491 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:19:46 Download gff for RH60845.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082304..20083015 492..1203 100 <- Minus
2L 20084578..20085067 1..491 99   Minus

RH60845.hyp Sequence

Translation from 0 to 723

> RH60845.hyp
FSFTRDLQQNTSNFGERFAAQEEERRKTSASHLHAKVHQKALLKKQNKVI
LKARFIGRPSQSRDKVKRPRTTRAKREKERKTHTHITNTIHIPLIGTAVR
KNSNETPHSTDMDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTT
SSHAVKDCYSRVQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQR
KHHDSICEDEEDMHEHEHELEHTHNHSQSTVLAAPQSCKV*

RH60845.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
fok-PC 129 CG43690-PC 1..129 112..240 720 100 Plus
fok-PA 129 CG43690-PA 1..129 112..240 720 100 Plus
fok-PD 103 CG43690-PD 1..81 112..201 292 67.8 Plus

RH60845.pep Sequence

Translation from 334 to 723

> RH60845.pep
MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR
VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE
DMHEHEHELEHTHNHSQSTVLAAPQSCKV*

RH60845.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15456-PA 137 GF15456-PA 1..137 1..129 517 76.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21590-PA 127 GG21590-PA 1..127 1..129 662 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13240-PA 133 GH13240-PA 1..133 1..129 428 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
fok-PC 129 CG43690-PC 1..129 1..129 720 100 Plus
fok-PA 129 CG43690-PA 1..129 1..129 720 100 Plus
fok-PD 103 CG43690-PD 1..81 1..90 292 67.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12517-PA 130 GI12517-PA 1..130 1..129 440 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26672-PA 133 GL26672-PA 1..133 1..129 451 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29011-PA 133 GA29011-PA 1..133 1..129 451 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16964-PA 129 GM16964-PA 1..129 1..129 687 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21716-PA 129 GD21716-PA 1..129 1..129 690 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17890-PA 136 GJ17890-PA 1..136 1..129 445 72.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23806-PA 130 GK23806-PA 1..96 1..96 461 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fok-PA 129 GE12608-PA 1..129 1..129 685 98.4 Plus