BDGP Sequence Production Resources |
Search the DGRC for RH60941
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 609 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Syngr-RA |
Protein status: | RH60941.pep: gold |
Preliminary Size: | 1162 |
Sequenced Size: | 2726 |
Gene | Date | Evidence |
---|---|---|
CG10808 | 2001-12-17 | Blastp of sequenced clone |
CG10808 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10808 | 2003-01-01 | Sim4 clustering to Release 3 |
synaptogyrin | 2008-04-29 | Release 5.5 accounting |
synaptogyrin | 2008-08-15 | Release 5.9 accounting |
synaptogyrin | 2008-12-18 | 5.12 accounting |
2726 bp (2726 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071753
> RH60941.complete GTCTGGCAAGAGTCCTGCGCGCTGGCAGTCGAAATTGCGTTGAGAGCGAA GCTGGCAAAAAGTAAAAGTGAAAATCAGGCCCTTGAAATTTGTTCATCAA TTATGCATTGATTGAAACACGAGCGAGTGCTGTGAATTGTCTTGTTGTGT GCGCGCATAACGGAAAGTGAATTTGAAAAGCGAGTGTGCAAACACACAAG CATTGCGTACAAAGATTGTCATTCCGTTCCGTAATCCATAATTGCGTGAA GACACTCGAGCGCACCCACCCACACCACGCACGGTATATTGTATATACAC ATATACACACACACAGCAGTGGGCCAGCCGCCCCCACATTGCCCTTGGCC CCACGGACCCAAGAAGCGTTCGATTTTTCACAACAGCCAGCGAAAACGCC AAGCGGAGAGCGCCCCAATAGCAAGCAGTGCAATCCGGACATCAGAGACC CATCATCACCATGGACATGCTCAACCAGATACTCAGCATCAATAACGGTG GCGCCTACGGGGGCGGCAAGGCTGGCGGCGCCTTCGACCCCCTCACGTTC GCCATGAAGCCCCAAGTAGTCATCAGGGCCTTGTGCTGGCTCTTCTCGGT GGTGGTCTTTGGCTGCATATCCTCGGAGGGTTGGACGGAGAAGGATGGCA AGGAGTACTGCCTCTATAATGGCGACGGCATGGCCTGCAAGTATGGCAAC ATGGTGGGCGTCTTCGGGTTCCTGGCCTCCATGGGTTTCATGGGTGGCGA GTTCCTGTTCGAACGGATGTCGTCGGTGAAGAGCAGAAAGCGTTATGTCA TGGCCGACATGGGTTTCTCGGCCCTCTGGACATTCATGTACTTCGTGGCC TTCTTGTACTTGTGGTCGCAATGGAGCTCATCCGCCCCACCGCCGCTGGG AATCGGAGCTGGCAGCATGAAGACCGCCATTTGGTTCTGCCTCTTCTCGA TTGTCAGCTGGGCTCTGTGCGCCCTGATGGCTTACAAGCGTTTCCTGATC GGCGCCGGCGATGAGTTCACCTCTGCCTTCGAAACGGATCCCGCCAACGT GGTCCACCAGCAGGCCTACGGCTACTCCATGGACAACGACAACGACCAGT ACAGCGCCTCACCATTTGGCCAGCCCCAGCAGGGAGGCATGGAGCAGCAA CAATCCGGAATGGAGTACCAGCAGCCCACCTATTAAGGAATTACCACACT TGCTCCTCCGTTGTCCGCACACACTCACTTCGATTTTGTAGTGCAACTGG CAAGGATTTACACGACTAAACAGCTACAACACACAAGTTGGCTTTAACCA TATACACCGATGTCGAACATATAACAAGAGTAACCAAAACAATAACACTT GATGCAACAAGCAGGCAGCAAAAGCAGCTGAAACCAATCCAAGCACTGGC TTTAGCTATTGGAAGAGTCAAGGGATATATCCAAACCGATCCGATCCGAT ATGAGATCGGATGGGATGAGATGGGATGGTTCGGATAAGGAGTAGTTTGA ATAACTCGTAAGCTAGCCCTTTAAGTTGAGTGTGCAGTTTTTTGTAGTGG GAATTTGTTGCAATATATATATATATATATATATATATATATATTATACA GATATACAACTAGTTATATATCCCATATGTATACATGCAGACCGCGCTTT CAACGTTGTTAGTTATTTAGTGTTTACGTGTACGTACCATTTGAATTGAT TTGAATTGATTTGTTTTGGTGCCAGACCCTGGTCCCCCCGATGATCAGCT TGTTAGCAATGGCAATAGCTCGAGACAGAGGAAAACATGATGTTTTTTTA GATAAATTTACACACGTGCAGTGCAAATAGTTGATGCAAATAGTTGATGC GATTCGGCCACCTTAAGGACATACATATGTACGAACCACACTGCTCAAGC CACATATCCAATTTACCATCTGAGATTTACCCAACAAATATAGAACCTGT GGCCAGGGTCGATGCTTGGTTAGATGAGCAGCAAATGCAACCACTTACAA TAAACGCCAAACAATATGTAAATTCTAAACCATAAGAGATTCAATAACCG TAGAATTGTTGTGAGGGATTCAGTACTCGGGAGATTACTGCAGGAATATT TCTAGTTATGGTTCGCAAAAACACGCTGAAGATATGAAATGGTATAGGGC TTGTTCAAGGCTTACTGTTGCCACCCCCTTCCTACCAAAAGATTTGTATA GTAACTATAAATGCCCCAACAATACCCATTATGCATTGTAAAGAAGCGGT GTGTTGTCCACTTCGATGTACTCAGATATCAATGAATGTAAACATATTGA TTACATAAAAACGTTCACTTAGTGCAGCAACTTGCGATAACCTACAAATG TATTTGTTAAATTAAATACTATATACATATATATTATATATATTTACGGA TTGTATGTGTAATACGAATAATGCGCCCTGTTAAATGCAACAAGGAGATA GGGATCTCAGCAAATATACAAGTATAAATTAATCATTTAGAGTTCGTGTG CGTTATAAAACAAAAAGGTAGTGAAAGAAACATAAAACAAAATTTACTCA TTTAAAACTTAATGATCGATTTAAATAGCGAACCCAGCCATAAAATCGGC TTGAACATTTGCGAAACACTATTGTAATAGATAAACTCCTCAAGCAAGAT TCTCAACTGGACAGCCCCTCAAGAAATAATAATAAATACATATTTTTAAA AATTAACCCAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
synaptogyrin-RA | 3068 | synaptogyrin-RA | 323..3032 | 4..2713 | 13505 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9729112..9730685 | 2709..1136 | 7735 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 9733018..9733603 | 589..4 | 2930 | 100 | Minus |
chr2R | 21145070 | chr2R | 9731336..9731568 | 821..589 | 1150 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 9730890..9731063 | 1134..961 | 840 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 9731124..9731265 | 962..821 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13841757..13843334 | 2713..1136 | 7860 | 99.9 | Minus |
2R | 25286936 | 2R | 13845666..13846251 | 589..4 | 2930 | 100 | Minus |
2R | 25286936 | 2R | 13843985..13844217 | 821..589 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 13843539..13843712 | 1134..961 | 870 | 100 | Minus |
2R | 25286936 | 2R | 13843773..13843914 | 962..821 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13842956..13844533 | 2713..1136 | 7860 | 99.8 | Minus |
2R | 25260384 | 2R | 13846865..13847450 | 589..4 | 2930 | 100 | Minus |
2R | 25260384 | 2R | 13845184..13845416 | 821..589 | 1165 | 100 | Minus |
2R | 25260384 | 2R | 13844738..13844911 | 1134..961 | 870 | 100 | Minus |
2R | 25260384 | 2R | 13844972..13845113 | 962..821 | 710 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9731336..9731567 | 590..821 | 99 | <- | Minus |
chr2R | 9730891..9731062 | 962..1133 | 98 | <- | Minus |
chr2R | 9731125..9731264 | 822..961 | 100 | <- | Minus |
chr2R | 9733018..9733604 | 1..589 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..726 | 461..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..726 | 461..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syngr-RA | 1..726 | 461..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..726 | 461..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syngr-RA | 1..726 | 461..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..2707 | 4..2709 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..2707 | 4..2709 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syngr-RA | 2..2710 | 1..2709 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
synaptogyrin-RA | 1..2707 | 4..2709 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syngr-RA | 2..2710 | 1..2709 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13841761..13843336 | 1134..2709 | 99 | <- | Minus |
2R | 13843540..13843711 | 962..1133 | 100 | <- | Minus |
2R | 13843774..13843913 | 822..961 | 100 | <- | Minus |
2R | 13843985..13844216 | 590..821 | 100 | <- | Minus |
2R | 13845666..13846252 | 1..589 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13841761..13843336 | 1134..2709 | 99 | <- | Minus |
2R | 13843540..13843711 | 962..1133 | 100 | <- | Minus |
2R | 13843774..13843913 | 822..961 | 100 | <- | Minus |
2R | 13843985..13844216 | 590..821 | 100 | <- | Minus |
2R | 13845666..13846252 | 1..589 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13841761..13843336 | 1134..2709 | 99 | <- | Minus |
2R | 13843540..13843711 | 962..1133 | 100 | <- | Minus |
2R | 13843774..13843913 | 822..961 | 100 | <- | Minus |
2R | 13843985..13844216 | 590..821 | 100 | <- | Minus |
2R | 13845666..13846252 | 1..589 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9729266..9730841 | 1134..2709 | 99 | <- | Minus |
arm_2R | 9731045..9731216 | 962..1133 | 100 | <- | Minus |
arm_2R | 9731279..9731418 | 822..961 | 100 | <- | Minus |
arm_2R | 9731490..9731721 | 590..821 | 100 | <- | Minus |
arm_2R | 9733171..9733757 | 1..589 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13842960..13844535 | 1134..2709 | 99 | <- | Minus |
2R | 13844739..13844910 | 962..1133 | 100 | <- | Minus |
2R | 13844973..13845112 | 822..961 | 100 | <- | Minus |
2R | 13845184..13845415 | 590..821 | 100 | <- | Minus |
2R | 13846865..13847451 | 1..589 | 99 | Minus |
Translation from 460 to 1185
> RH60941.hyp MDMLNQILSINNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVF GCISSEGWTEKDGKEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLF ERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAPPPLGIGA GSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQ QAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syngr-PA | 241 | CG10808-PA | 1..241 | 1..241 | 1305 | 100 | Plus |
Translation from 460 to 1185
> RH60941.pep MDMLNQILSINNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVF GCISSEGWTEKDGKEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLF ERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAPPPLGIGA GSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQ QAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11162-PA | 240 | GF11162-PA | 1..240 | 1..241 | 1030 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22467-PA | 241 | GG22467-PA | 1..241 | 1..241 | 1265 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20867-PA | 240 | GH20867-PA | 1..240 | 1..241 | 1049 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syngr-PA | 241 | CG10808-PA | 1..241 | 1..241 | 1305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20974-PA | 239 | GI20974-PA | 1..239 | 1..241 | 1022 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16996-PA | 242 | GL16996-PA | 1..242 | 1..241 | 1078 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10572-PA | 242 | GA10572-PA | 1..242 | 1..241 | 1078 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20253-PA | 241 | GM20253-PA | 1..241 | 1..241 | 1270 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25739-PA | 241 | GD25739-PA | 1..241 | 1..241 | 1277 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20694-PA | 239 | GJ20694-PA | 1..239 | 1..241 | 1049 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17938-PA | 239 | GK17938-PA | 1..239 | 1..241 | 1070 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13338-PA | 241 | GE13338-PA | 1..241 | 1..241 | 1265 | 98.8 | Plus |