Clone RH60941 Report

Search the DGRC for RH60941

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:609
Well:41
Vector:pFlc-1
Associated Gene/TranscriptSyngr-RA
Protein status:RH60941.pep: gold
Preliminary Size:1162
Sequenced Size:2726

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10808 2001-12-17 Blastp of sequenced clone
CG10808 2002-01-01 Sim4 clustering to Release 2
CG10808 2003-01-01 Sim4 clustering to Release 3
synaptogyrin 2008-04-29 Release 5.5 accounting
synaptogyrin 2008-08-15 Release 5.9 accounting
synaptogyrin 2008-12-18 5.12 accounting

Clone Sequence Records

RH60941.complete Sequence

2726 bp (2726 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071753

> RH60941.complete
GTCTGGCAAGAGTCCTGCGCGCTGGCAGTCGAAATTGCGTTGAGAGCGAA
GCTGGCAAAAAGTAAAAGTGAAAATCAGGCCCTTGAAATTTGTTCATCAA
TTATGCATTGATTGAAACACGAGCGAGTGCTGTGAATTGTCTTGTTGTGT
GCGCGCATAACGGAAAGTGAATTTGAAAAGCGAGTGTGCAAACACACAAG
CATTGCGTACAAAGATTGTCATTCCGTTCCGTAATCCATAATTGCGTGAA
GACACTCGAGCGCACCCACCCACACCACGCACGGTATATTGTATATACAC
ATATACACACACACAGCAGTGGGCCAGCCGCCCCCACATTGCCCTTGGCC
CCACGGACCCAAGAAGCGTTCGATTTTTCACAACAGCCAGCGAAAACGCC
AAGCGGAGAGCGCCCCAATAGCAAGCAGTGCAATCCGGACATCAGAGACC
CATCATCACCATGGACATGCTCAACCAGATACTCAGCATCAATAACGGTG
GCGCCTACGGGGGCGGCAAGGCTGGCGGCGCCTTCGACCCCCTCACGTTC
GCCATGAAGCCCCAAGTAGTCATCAGGGCCTTGTGCTGGCTCTTCTCGGT
GGTGGTCTTTGGCTGCATATCCTCGGAGGGTTGGACGGAGAAGGATGGCA
AGGAGTACTGCCTCTATAATGGCGACGGCATGGCCTGCAAGTATGGCAAC
ATGGTGGGCGTCTTCGGGTTCCTGGCCTCCATGGGTTTCATGGGTGGCGA
GTTCCTGTTCGAACGGATGTCGTCGGTGAAGAGCAGAAAGCGTTATGTCA
TGGCCGACATGGGTTTCTCGGCCCTCTGGACATTCATGTACTTCGTGGCC
TTCTTGTACTTGTGGTCGCAATGGAGCTCATCCGCCCCACCGCCGCTGGG
AATCGGAGCTGGCAGCATGAAGACCGCCATTTGGTTCTGCCTCTTCTCGA
TTGTCAGCTGGGCTCTGTGCGCCCTGATGGCTTACAAGCGTTTCCTGATC
GGCGCCGGCGATGAGTTCACCTCTGCCTTCGAAACGGATCCCGCCAACGT
GGTCCACCAGCAGGCCTACGGCTACTCCATGGACAACGACAACGACCAGT
ACAGCGCCTCACCATTTGGCCAGCCCCAGCAGGGAGGCATGGAGCAGCAA
CAATCCGGAATGGAGTACCAGCAGCCCACCTATTAAGGAATTACCACACT
TGCTCCTCCGTTGTCCGCACACACTCACTTCGATTTTGTAGTGCAACTGG
CAAGGATTTACACGACTAAACAGCTACAACACACAAGTTGGCTTTAACCA
TATACACCGATGTCGAACATATAACAAGAGTAACCAAAACAATAACACTT
GATGCAACAAGCAGGCAGCAAAAGCAGCTGAAACCAATCCAAGCACTGGC
TTTAGCTATTGGAAGAGTCAAGGGATATATCCAAACCGATCCGATCCGAT
ATGAGATCGGATGGGATGAGATGGGATGGTTCGGATAAGGAGTAGTTTGA
ATAACTCGTAAGCTAGCCCTTTAAGTTGAGTGTGCAGTTTTTTGTAGTGG
GAATTTGTTGCAATATATATATATATATATATATATATATATATTATACA
GATATACAACTAGTTATATATCCCATATGTATACATGCAGACCGCGCTTT
CAACGTTGTTAGTTATTTAGTGTTTACGTGTACGTACCATTTGAATTGAT
TTGAATTGATTTGTTTTGGTGCCAGACCCTGGTCCCCCCGATGATCAGCT
TGTTAGCAATGGCAATAGCTCGAGACAGAGGAAAACATGATGTTTTTTTA
GATAAATTTACACACGTGCAGTGCAAATAGTTGATGCAAATAGTTGATGC
GATTCGGCCACCTTAAGGACATACATATGTACGAACCACACTGCTCAAGC
CACATATCCAATTTACCATCTGAGATTTACCCAACAAATATAGAACCTGT
GGCCAGGGTCGATGCTTGGTTAGATGAGCAGCAAATGCAACCACTTACAA
TAAACGCCAAACAATATGTAAATTCTAAACCATAAGAGATTCAATAACCG
TAGAATTGTTGTGAGGGATTCAGTACTCGGGAGATTACTGCAGGAATATT
TCTAGTTATGGTTCGCAAAAACACGCTGAAGATATGAAATGGTATAGGGC
TTGTTCAAGGCTTACTGTTGCCACCCCCTTCCTACCAAAAGATTTGTATA
GTAACTATAAATGCCCCAACAATACCCATTATGCATTGTAAAGAAGCGGT
GTGTTGTCCACTTCGATGTACTCAGATATCAATGAATGTAAACATATTGA
TTACATAAAAACGTTCACTTAGTGCAGCAACTTGCGATAACCTACAAATG
TATTTGTTAAATTAAATACTATATACATATATATTATATATATTTACGGA
TTGTATGTGTAATACGAATAATGCGCCCTGTTAAATGCAACAAGGAGATA
GGGATCTCAGCAAATATACAAGTATAAATTAATCATTTAGAGTTCGTGTG
CGTTATAAAACAAAAAGGTAGTGAAAGAAACATAAAACAAAATTTACTCA
TTTAAAACTTAATGATCGATTTAAATAGCGAACCCAGCCATAAAATCGGC
TTGAACATTTGCGAAACACTATTGTAATAGATAAACTCCTCAAGCAAGAT
TCTCAACTGGACAGCCCCTCAAGAAATAATAATAAATACATATTTTTAAA
AATTAACCCAAAAAAAAAAAAAAAAA

RH60941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
synaptogyrin-RA 3068 synaptogyrin-RA 323..3032 4..2713 13505 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9729112..9730685 2709..1136 7735 99.4 Minus
chr2R 21145070 chr2R 9733018..9733603 589..4 2930 100 Minus
chr2R 21145070 chr2R 9731336..9731568 821..589 1150 99.6 Minus
chr2R 21145070 chr2R 9730890..9731063 1134..961 840 98.9 Minus
chr2R 21145070 chr2R 9731124..9731265 962..821 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13841757..13843334 2713..1136 7860 99.9 Minus
2R 25286936 2R 13845666..13846251 589..4 2930 100 Minus
2R 25286936 2R 13843985..13844217 821..589 1165 100 Minus
2R 25286936 2R 13843539..13843712 1134..961 870 100 Minus
2R 25286936 2R 13843773..13843914 962..821 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13842956..13844533 2713..1136 7860 99.8 Minus
2R 25260384 2R 13846865..13847450 589..4 2930 100 Minus
2R 25260384 2R 13845184..13845416 821..589 1165 100 Minus
2R 25260384 2R 13844738..13844911 1134..961 870 100 Minus
2R 25260384 2R 13844972..13845113 962..821 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:57:57 has no hits.

RH60941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:12 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9731336..9731567 590..821 99 <- Minus
chr2R 9730891..9731062 962..1133 98 <- Minus
chr2R 9731125..9731264 822..961 100 <- Minus
chr2R 9733018..9733604 1..589 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:03 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..726 461..1186 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:57 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..726 461..1186 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:03 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 1..726 461..1186 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:42 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..726 461..1186 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:29 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 1..726 461..1186 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:47 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..2707 4..2709 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:57 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..2707 4..2709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:03 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 2..2710 1..2709 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:42 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 1..2707 4..2709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:29 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 2..2710 1..2709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:12 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13841761..13843336 1134..2709 99 <- Minus
2R 13843540..13843711 962..1133 100 <- Minus
2R 13843774..13843913 822..961 100 <- Minus
2R 13843985..13844216 590..821 100 <- Minus
2R 13845666..13846252 1..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:12 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13841761..13843336 1134..2709 99 <- Minus
2R 13843540..13843711 962..1133 100 <- Minus
2R 13843774..13843913 822..961 100 <- Minus
2R 13843985..13844216 590..821 100 <- Minus
2R 13845666..13846252 1..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:12 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13841761..13843336 1134..2709 99 <- Minus
2R 13843540..13843711 962..1133 100 <- Minus
2R 13843774..13843913 822..961 100 <- Minus
2R 13843985..13844216 590..821 100 <- Minus
2R 13845666..13846252 1..589 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:03 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9729266..9730841 1134..2709 99 <- Minus
arm_2R 9731045..9731216 962..1133 100 <- Minus
arm_2R 9731279..9731418 822..961 100 <- Minus
arm_2R 9731490..9731721 590..821 100 <- Minus
arm_2R 9733171..9733757 1..589 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:41 Download gff for RH60941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13842960..13844535 1134..2709 99 <- Minus
2R 13844739..13844910 962..1133 100 <- Minus
2R 13844973..13845112 822..961 100 <- Minus
2R 13845184..13845415 590..821 100 <- Minus
2R 13846865..13847451 1..589 99   Minus

RH60941.hyp Sequence

Translation from 460 to 1185

> RH60941.hyp
MDMLNQILSINNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVF
GCISSEGWTEKDGKEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLF
ERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAPPPLGIGA
GSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQ
QAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY*

RH60941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-PA 241 CG10808-PA 1..241 1..241 1305 100 Plus

RH60941.pep Sequence

Translation from 460 to 1185

> RH60941.pep
MDMLNQILSINNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVF
GCISSEGWTEKDGKEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLF
ERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAPPPLGIGA
GSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQ
QAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY*

RH60941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11162-PA 240 GF11162-PA 1..240 1..241 1030 95.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22467-PA 241 GG22467-PA 1..241 1..241 1265 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20867-PA 240 GH20867-PA 1..240 1..241 1049 86.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-PA 241 CG10808-PA 1..241 1..241 1305 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20974-PA 239 GI20974-PA 1..239 1..241 1022 84.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16996-PA 242 GL16996-PA 1..242 1..241 1078 95 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10572-PA 242 GA10572-PA 1..242 1..241 1078 95 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20253-PA 241 GM20253-PA 1..241 1..241 1270 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25739-PA 241 GD25739-PA 1..241 1..241 1277 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20694-PA 239 GJ20694-PA 1..239 1..241 1049 87.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17938-PA 239 GK17938-PA 1..239 1..241 1070 89.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13338-PA 241 GE13338-PA 1..241 1..241 1265 98.8 Plus