Clone RH61091 Report

Search the DGRC for RH61091

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:610
Well:91
Vector:pFlc-1
Associated Gene/TranscriptCG7990-RA
Protein status:RH61091.pep: gold
Sequenced Size:3078

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7990 2008-04-29 Release 5.5 accounting
CG7990 2008-04-29 Picked prior to 5.5
CG7990 2008-08-15 Release 5.9 accounting
CG7990 2008-12-18 5.12 accounting

Clone Sequence Records

RH61091.complete Sequence

3078 bp assembled on 2007-09-19

GenBank Submission: BT031025

> RH61091.complete
GAGTTGCGAGAGAGGCGCGCGCGCGGTCACAACTGGGCGACGGCAGCGAT
TGGGGCATGCAAATTATGCCAAATAGCACCATCGACGGGAGCACGGGCAC
GAGAAGCAGCAGCAGCAACAGCAACGCCACAGCCAAAGTCATCGCCAGCG
TCAACGCCGACAACCGAGCACAGAATGCAGCAGAGCACCGGAGCGGCGAC
GTCATCCGCAGCAGATAGCGGGATGGGGGCGACGGACCTGGTGTCCAGGT
GCGTTGGCGACGGCGGGGGAGGTGGCGGGAACAGCTGCTCCGGCGGATCC
AGCGACCCAGCAGCGATCAACACAACGATTAGCTCCAAGCAGGCGGATGC
GAGGGAGCCGCAGGAGCAGCAGGTTGCCATCCACTACTTGGCTAGCTTCC
ATGAACTGTGCGTGGTGACCGCCCTGCTGCCGCTGGTGACGCTCTTCACG
TGCTTCGTGACCGCCTACGTCTTCCAGTACGACGATGTCCACGAGACACA
TTGCCGCGTCTACAACATTATACCCTCGATAAGTGCAATTACCGGCGTCA
GTCCGCAGCGCTACTTCTGGCGCTTCAGCATCGCGCTCCACATCGGACCG
CGAATCCCCATCGCCTTTGTCTACAAGAACTACTACCGCTCGCAGCTGCG
TCGGATCAGTCCCGCCCAGGTGCCTCAGACGAGCCTGCTCATCACGCTGA
TCCTGGTGCTCAATTGCATCGAGATCGCGTCCCTGGGCGGCGTCACCTAT
ATATCGAATCGCGAGAACTACCCCGTTCACGAGCGCATATTCATCACGTT
CATGGTCTGCTCGCTGTGTTACATGCTGGCCACCATCAAGCTGAACGGCA
TCCTCAATGCCGGACAGGCACTGAGCGAAAAGCAGCTCCTCTCCATCAAG
TGGAAGAAGATCCTGTTCGCCGTCTCCATCCTGAGCACCGTCGGCCTGCT
GGTGTTCTTTGCCAAACATCGCTTCTACTGTCACGACTTGGCATTCAGTT
GGTTCGCGTTCTTCGAGTACTTGATCGCCATTGCCAACATGCTTTTCCAC
TTCACCATCATCTGGGACTTCCCATCGCAGTTCATGATGATCGTGCAGGG
ACCCCGCGAGAATCTTGCCCAGTATTTGAGCAACCGGCCGAAACTGGACT
AGATTCGACCAGGACTAGATGCCCCCAGCACGCCACTCCTCCAGTGAACC
GTGTGCGTGTAATTCCCGTGCGAAACGTACAATTAACGAACTTCTTCAAC
TTTAAAACTAAGCGCTTCCATACCGATCAACCATAGCAAATTTAGCCTTC
TTCTAATTCTTCGATTCTCTTTACACTTACACTTATGTATCAATCTAAAC
CGAAAGCGAAACCAAACCAAAATCCAGAGATAAATGTTCCATAGTTCCGT
GATTAATATAGCTATTGAATTTAACAACAAGTATGTAAAGAATTTTGCCA
GATTAGAGGGCATACCGTTCTATGTACACATTCTAAATACGTGAAATAAG
TTACCTAGGGATTAAGTGCACCCAAAACCAAAACCAAACCAAATGGATCG
CAGCTCGCCAGATCTCATGTCAATTTCGAATGGAATGCAAGGAGCCAAGC
CAGGTGCGAGCAGTTTCATTTGTTAGGCAGTAAAGTAAAGTAAAATAAAT
AGAAGTCGCATTACTTACCACTTAGTACATATCGTTTATACAAGATGATA
ACGAGCAGCGGGAAATAGCCTCCTTGGGACAGGCCCTATTGGCCCCCAAC
CACAAAAGAAAAACAAACAAACATAAAAGGAACAAGGACACGATTCTAAT
AGACGGTAATCAGACAATAGACATTAAGTGTGCGACTTTGCTGCGGGCAA
CGAACCAGGACCTCCACAGATTCCATCCGAGCAGTGATGGCAAATGATAT
TTCCCGGATAGTTGATAGCTAGCTAACTCATGCCCATAGTTTCAGAATCC
CTCACTGATCGTGGATCGGATTGAATAATCCGAATGGACGTGGAGGTGCG
GCTTCTGGTGCTCACGGGGTCAGAAGGTCAGTGGTATAAGCAAATGTAGC
CAAGTAAACAATTGTTCTTAGCCAACTTTAATAGTGAAATAAAAATCGAA
AGACGGAGCAATCCGGTGAAAACTAGAGGCCCATCATAGGTAACCGAATT
GCAAACCAGATTAGGATCAATATATTTTGCAGCAAAGGAGTTGCGTAGGT
GTTTTTTTTTTGTTTTTTTTTCTTCTACACAAGAGTACTTAGTGTAAATC
GAGAAGAGTTCAAATTGATATCGCTACTTGGCCAACTTTGTGCCATATGT
ACACAGCAGGTTCAGGCGGAAGGTTTTATTCGATAAGTAGTACGTGCTAT
TGCTAACCTTAATTATGATTGCGATTGTGCATTATATTTGCAGGAGATCG
ACGTCTTAGGTAATAACCCCGTATGTTCCCGAAAACGAGCAACGTATTTA
TGTAGCTAAGCCAATGAAACAATTGTTAATTCTCACACAAAAAACCAAAT
ACAAACGGACACTCTATAAAAAAAAAATGTTATACAGATTAACAAATGCA
AGCAAGCTCACGCCCACTCATGCGATATGTTATGCAATAGTTAAGTTGCC
AGTTGCACCTCGCGATCGATCAGATATATATTGTATTTGAATTATTGTTA
ATGCTTACACGGCCTGCGTTTAGCCCACTTTAACTATATCTATACTAATG
TATAACTCTGTCCCGCTCCATTTCGATTCCCCATTTCCGATTATGTGCCT
CACTCTCTCTTTCCCACACCCCCAAGAATATGTACTTCCAGTCGCATCCG
ATCCGGTTGCAGACTATATTCATATATTCATATATATATATATATATGCG
CTTTATATATACCGCTCACCGGCTAATCTTCAATTATTTTGTCCGGCAAA
TGGATGGTCACTTTTTAAAATGCAACTTTTTACCTTTGCATAACTTTTTA
GGCGACACAACGTAAGAGAATTAATTAAAAATGAAATGCAAAACTTAACT
ATGAAATACATATGTAAACTTTGTAGCTTCCTAATTGAATAAAGATAAAT
ACAACTCACACGAAAAAAAAAAAAAAAA

RH61091.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7990-RA 3303 CG7990-RA 227..3289 2..3064 15285 99.9 Plus
CG7990-RB 3142 CG7990-RB 380..3129 315..3064 13735 99.9 Plus
CG7990.b 3088 CG7990.b 380..2405 315..2340 10115 99.9 Plus
CG7990.b 3088 CG7990.b 2405..3075 2394..3064 3355 100 Plus
CG7990-RB 3142 CG7990-RB 1..314 2..315 1555 99.6 Plus
CG7990.b 3088 CG7990.b 1..314 2..315 1555 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19084984..19087056 3062..991 10210 99.7 Minus
chrX 22417052 chrX 19090365..19090678 315..2 1540 99.4 Minus
chrX 22417052 chrX 19087429..19087693 772..508 1325 100 Minus
chrX 22417052 chrX 19087143..19087361 991..773 1095 100 Minus
chrX 22417052 chrX 19088184..19088378 509..315 975 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19196071..19198144 3064..991 10355 100 Minus
X 23542271 X 19201464..19201777 315..2 1555 99.7 Minus
X 23542271 X 19198517..19198781 772..508 1325 100 Minus
X 23542271 X 19198231..19198449 991..773 1095 100 Minus
X 23542271 X 19199271..19199465 509..315 975 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19204169..19206242 3064..991 10355 99.9 Minus
X 23527363 X 19209562..19209875 315..2 1555 99.6 Minus
X 23527363 X 19206615..19206879 772..508 1325 100 Minus
X 23527363 X 19206329..19206547 991..773 1095 100 Minus
X 23527363 X 19207369..19207563 509..315 975 100 Minus
Blast to na_te.dros performed 2019-03-16 11:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6915 72..213 195 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6699..6858 46..213 189 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2259..2462 21..214 183 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6853 93..214 173 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6883 75..214 167 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6952 75..214 160 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6944 72..212 159 62 Plus
roo 9092 roo DM_ROO 9092bp 1101..1170 72..141 152 68.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6932 75..237 151 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6840..6920 72..155 151 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2422..2584 72..233 145 58.4 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3262..3354 75..167 141 61.3 Plus
roo 9092 roo DM_ROO 9092bp 1077..1180 72..176 134 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2377..2507 75..214 131 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2675 72..147 130 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1092..1171 75..154 130 62.5 Plus
Doc2-element 4789 Doc2-element DOC2 4789bp 211..254 1747..1790 130 77.3 Plus
roo 9092 roo DM_ROO 9092bp 1058..1151 74..164 129 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1525..1591 72..143 123 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2467..2530 72..135 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2422 91..213 121 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2812..2954 75..214 121 58.6 Plus
TART-A 13424 TART-A 13424bp 13130..13191 1630..1690 118 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6868..6995 70..200 116 56.5 Plus

RH61091.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:41:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19088186..19088377 316..507 100 <- Minus
chrX 19084984..19087055 992..3062 98 <- Minus
chrX 19087143..19087361 773..991 100 <- Minus
chrX 19087429..19087693 508..772 100 <- Minus
chrX 19090365..19090678 1..315 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:07 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..978 175..1152 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:07:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..978 175..1152 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:17:55 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..978 175..1152 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:19 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..978 175..1152 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:18 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..978 175..1152 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:03:28 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..3061 2..3062 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:07:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..3061 2..3062 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:17:55 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..3061 2..3062 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:19 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 1..3061 2..3062 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:18 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
CG7990-RA 2..3064 1..3062 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
X 19196073..19198143 992..3062 99 <- Minus
X 19198231..19198449 773..991 100 <- Minus
X 19198517..19198781 508..772 100 <- Minus
X 19199273..19199464 316..507 100 <- Minus
X 19201464..19201777 1..315 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
X 19196073..19198143 992..3062 99 <- Minus
X 19198231..19198449 773..991 100 <- Minus
X 19198517..19198781 508..772 100 <- Minus
X 19199273..19199464 316..507 100 <- Minus
X 19201464..19201777 1..315 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:41:03 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
X 19196073..19198143 992..3062 99 <- Minus
X 19198231..19198449 773..991 100 <- Minus
X 19198517..19198781 508..772 100 <- Minus
X 19199273..19199464 316..507 100 <- Minus
X 19201464..19201777 1..315 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:17:55 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19090106..19092176 992..3062 99 <- Minus
arm_X 19092264..19092482 773..991 100 <- Minus
arm_X 19092550..19092814 508..772 100 <- Minus
arm_X 19093306..19093497 316..507 100 <- Minus
arm_X 19095497..19095810 1..315 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:21 Download gff for RH61091.complete
Subject Subject Range Query Range Percent Splice Strand
X 19206615..19206879 508..772 100 <- Minus
X 19207371..19207562 316..507 100 <- Minus
X 19209562..19209875 1..315 99   Minus
X 19204171..19206241 992..3062 99 <- Minus
X 19206329..19206547 773..991 100 <- Minus

RH61091.hyp Sequence

Translation from 3 to 1151

> RH61091.hyp
LRERRARGHNWATAAIGACKLCQIAPSTGARAREAAAATATPQPKSSPAS
TPTTEHRMQQSTGAATSSAADSGMGATDLVSRCVGDGGGGGGNSCSGGSS
DPAAINTTISSKQADAREPQEQQVAIHYLASFHELCVVTALLPLVTLFTC
FVTAYVFQYDDVHETHCRVYNIIPSISAITGVSPQRYFWRFSIALHIGPR
IPIAFVYKNYYRSQLRRISPAQVPQTSLLITLILVLNCIEIASLGGVTYI
SNRENYPVHERIFITFMVCSLCYMLATIKLNGILNAGQALSEKQLLSIKW
KKILFAVSILSTVGLLVFFAKHRFYCHDLAFSWFAFFEYLIAIANMLFHF
TIIWDFPSQFMMIVQGPRENLAQYLSNRPKLD*

RH61091.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7990-PA 325 CG7990-PA 1..325 58..382 1690 100 Plus
CG7990-PD 131 CG7990-PD 1..117 58..174 585 96.6 Plus
CG3876-PA 255 CG3876-PA 20..237 132..356 336 33.5 Plus
CG7990-PC 54 CG7990-PC 1..47 58..104 243 100 Plus

RH61091.pep Sequence

Translation from 174 to 1151

> RH61091.pep
MQQSTGAATSSAADSGMGATDLVSRCVGDGGGGGGNSCSGGSSDPAAINT
TISSKQADAREPQEQQVAIHYLASFHELCVVTALLPLVTLFTCFVTAYVF
QYDDVHETHCRVYNIIPSISAITGVSPQRYFWRFSIALHIGPRIPIAFVY
KNYYRSQLRRISPAQVPQTSLLITLILVLNCIEIASLGGVTYISNRENYP
VHERIFITFMVCSLCYMLATIKLNGILNAGQALSEKQLLSIKWKKILFAV
SILSTVGLLVFFAKHRFYCHDLAFSWFAFFEYLIAIANMLFHFTIIWDFP
SQFMMIVQGPRENLAQYLSNRPKLD*

RH61091.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16001-PA 355 GF16001-PA 56..355 35..325 1351 84.7 Plus
Dana\GF14823-PA 255 GF14823-PA 20..237 75..299 319 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18072-PA 325 GG18072-PA 1..325 1..325 1696 97.2 Plus
Dere\GG24627-PA 255 GG24627-PA 20..237 75..299 317 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12034-PA 345 GH12034-PA 34..345 7..325 1284 76.2 Plus
Dgri\GH10495-PA 255 GH10495-PA 20..254 75..320 294 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7990-PA 325 CG7990-PA 1..325 1..325 1690 100 Plus
CG7990-PD 131 CG7990-PD 1..117 1..117 585 96.6 Plus
PGAP2-PA 255 CG3876-PA 20..237 75..299 336 33.5 Plus
CG7990-PC 54 CG7990-PC 1..47 1..47 243 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14309-PA 312 GI14309-PA 38..312 51..325 1289 85.8 Plus
Dmoj\GI18012-PA 255 GI18012-PA 7..239 60..301 304 32.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13016-PA 349 GL13016-PA 23..349 6..325 1269 75.8 Plus
Dper\GL18632-PA 255 GL18632-PA 35..237 90..299 296 34.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25860-PA 347 GA25860-PA 23..347 6..325 1274 77 Plus
Dpse\GA17744-PA 255 GA17744-PA 35..237 90..299 296 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22761-PA 350 GM22761-PA 1..350 1..325 1682 91.7 Plus
Dsec\GM16642-PA 255 GM16642-PA 20..237 75..299 316 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15597-PA 325 GD15597-PA 1..325 1..325 1722 99.1 Plus
Dsim\GD22939-PA 255 GD22939-PA 20..237 75..299 314 33.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19365-PA 341 GJ19365-PA 22..341 7..325 1279 74.3 Plus
Dvir\GJ19643-PA 255 GJ19643-PA 19..237 74..299 286 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25756-PA 377 GK25756-PA 69..377 29..325 1314 78 Plus
Dwil\GK24413-PA 256 GK24413-PA 37..241 93..302 308 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15469-PA 348 GE15469-PA 1..348 1..325 1658 90.2 Plus
Dyak\GE15909-PA 255 GE15909-PA 20..237 75..299 320 33.6 Plus