BDGP Sequence Production Resources |
Search the DGRC for RH61091
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 610 |
Well: | 91 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7990-RA |
Protein status: | RH61091.pep: gold |
Sequenced Size: | 3078 |
Gene | Date | Evidence |
---|---|---|
CG7990 | 2008-04-29 | Release 5.5 accounting |
CG7990 | 2008-04-29 | Picked prior to 5.5 |
CG7990 | 2008-08-15 | Release 5.9 accounting |
CG7990 | 2008-12-18 | 5.12 accounting |
3078 bp assembled on 2007-09-19
GenBank Submission: BT031025
> RH61091.complete GAGTTGCGAGAGAGGCGCGCGCGCGGTCACAACTGGGCGACGGCAGCGAT TGGGGCATGCAAATTATGCCAAATAGCACCATCGACGGGAGCACGGGCAC GAGAAGCAGCAGCAGCAACAGCAACGCCACAGCCAAAGTCATCGCCAGCG TCAACGCCGACAACCGAGCACAGAATGCAGCAGAGCACCGGAGCGGCGAC GTCATCCGCAGCAGATAGCGGGATGGGGGCGACGGACCTGGTGTCCAGGT GCGTTGGCGACGGCGGGGGAGGTGGCGGGAACAGCTGCTCCGGCGGATCC AGCGACCCAGCAGCGATCAACACAACGATTAGCTCCAAGCAGGCGGATGC GAGGGAGCCGCAGGAGCAGCAGGTTGCCATCCACTACTTGGCTAGCTTCC ATGAACTGTGCGTGGTGACCGCCCTGCTGCCGCTGGTGACGCTCTTCACG TGCTTCGTGACCGCCTACGTCTTCCAGTACGACGATGTCCACGAGACACA TTGCCGCGTCTACAACATTATACCCTCGATAAGTGCAATTACCGGCGTCA GTCCGCAGCGCTACTTCTGGCGCTTCAGCATCGCGCTCCACATCGGACCG CGAATCCCCATCGCCTTTGTCTACAAGAACTACTACCGCTCGCAGCTGCG TCGGATCAGTCCCGCCCAGGTGCCTCAGACGAGCCTGCTCATCACGCTGA TCCTGGTGCTCAATTGCATCGAGATCGCGTCCCTGGGCGGCGTCACCTAT ATATCGAATCGCGAGAACTACCCCGTTCACGAGCGCATATTCATCACGTT CATGGTCTGCTCGCTGTGTTACATGCTGGCCACCATCAAGCTGAACGGCA TCCTCAATGCCGGACAGGCACTGAGCGAAAAGCAGCTCCTCTCCATCAAG TGGAAGAAGATCCTGTTCGCCGTCTCCATCCTGAGCACCGTCGGCCTGCT GGTGTTCTTTGCCAAACATCGCTTCTACTGTCACGACTTGGCATTCAGTT GGTTCGCGTTCTTCGAGTACTTGATCGCCATTGCCAACATGCTTTTCCAC TTCACCATCATCTGGGACTTCCCATCGCAGTTCATGATGATCGTGCAGGG ACCCCGCGAGAATCTTGCCCAGTATTTGAGCAACCGGCCGAAACTGGACT AGATTCGACCAGGACTAGATGCCCCCAGCACGCCACTCCTCCAGTGAACC GTGTGCGTGTAATTCCCGTGCGAAACGTACAATTAACGAACTTCTTCAAC TTTAAAACTAAGCGCTTCCATACCGATCAACCATAGCAAATTTAGCCTTC TTCTAATTCTTCGATTCTCTTTACACTTACACTTATGTATCAATCTAAAC CGAAAGCGAAACCAAACCAAAATCCAGAGATAAATGTTCCATAGTTCCGT GATTAATATAGCTATTGAATTTAACAACAAGTATGTAAAGAATTTTGCCA GATTAGAGGGCATACCGTTCTATGTACACATTCTAAATACGTGAAATAAG TTACCTAGGGATTAAGTGCACCCAAAACCAAAACCAAACCAAATGGATCG CAGCTCGCCAGATCTCATGTCAATTTCGAATGGAATGCAAGGAGCCAAGC CAGGTGCGAGCAGTTTCATTTGTTAGGCAGTAAAGTAAAGTAAAATAAAT AGAAGTCGCATTACTTACCACTTAGTACATATCGTTTATACAAGATGATA ACGAGCAGCGGGAAATAGCCTCCTTGGGACAGGCCCTATTGGCCCCCAAC CACAAAAGAAAAACAAACAAACATAAAAGGAACAAGGACACGATTCTAAT AGACGGTAATCAGACAATAGACATTAAGTGTGCGACTTTGCTGCGGGCAA CGAACCAGGACCTCCACAGATTCCATCCGAGCAGTGATGGCAAATGATAT TTCCCGGATAGTTGATAGCTAGCTAACTCATGCCCATAGTTTCAGAATCC CTCACTGATCGTGGATCGGATTGAATAATCCGAATGGACGTGGAGGTGCG GCTTCTGGTGCTCACGGGGTCAGAAGGTCAGTGGTATAAGCAAATGTAGC CAAGTAAACAATTGTTCTTAGCCAACTTTAATAGTGAAATAAAAATCGAA AGACGGAGCAATCCGGTGAAAACTAGAGGCCCATCATAGGTAACCGAATT GCAAACCAGATTAGGATCAATATATTTTGCAGCAAAGGAGTTGCGTAGGT GTTTTTTTTTTGTTTTTTTTTCTTCTACACAAGAGTACTTAGTGTAAATC GAGAAGAGTTCAAATTGATATCGCTACTTGGCCAACTTTGTGCCATATGT ACACAGCAGGTTCAGGCGGAAGGTTTTATTCGATAAGTAGTACGTGCTAT TGCTAACCTTAATTATGATTGCGATTGTGCATTATATTTGCAGGAGATCG ACGTCTTAGGTAATAACCCCGTATGTTCCCGAAAACGAGCAACGTATTTA TGTAGCTAAGCCAATGAAACAATTGTTAATTCTCACACAAAAAACCAAAT ACAAACGGACACTCTATAAAAAAAAAATGTTATACAGATTAACAAATGCA AGCAAGCTCACGCCCACTCATGCGATATGTTATGCAATAGTTAAGTTGCC AGTTGCACCTCGCGATCGATCAGATATATATTGTATTTGAATTATTGTTA ATGCTTACACGGCCTGCGTTTAGCCCACTTTAACTATATCTATACTAATG TATAACTCTGTCCCGCTCCATTTCGATTCCCCATTTCCGATTATGTGCCT CACTCTCTCTTTCCCACACCCCCAAGAATATGTACTTCCAGTCGCATCCG ATCCGGTTGCAGACTATATTCATATATTCATATATATATATATATATGCG CTTTATATATACCGCTCACCGGCTAATCTTCAATTATTTTGTCCGGCAAA TGGATGGTCACTTTTTAAAATGCAACTTTTTACCTTTGCATAACTTTTTA GGCGACACAACGTAAGAGAATTAATTAAAAATGAAATGCAAAACTTAACT ATGAAATACATATGTAAACTTTGTAGCTTCCTAATTGAATAAAGATAAAT ACAACTCACACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7990-RA | 3303 | CG7990-RA | 227..3289 | 2..3064 | 15285 | 99.9 | Plus |
CG7990-RB | 3142 | CG7990-RB | 380..3129 | 315..3064 | 13735 | 99.9 | Plus |
CG7990.b | 3088 | CG7990.b | 380..2405 | 315..2340 | 10115 | 99.9 | Plus |
CG7990.b | 3088 | CG7990.b | 2405..3075 | 2394..3064 | 3355 | 100 | Plus |
CG7990-RB | 3142 | CG7990-RB | 1..314 | 2..315 | 1555 | 99.6 | Plus |
CG7990.b | 3088 | CG7990.b | 1..314 | 2..315 | 1555 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 19084984..19087056 | 3062..991 | 10210 | 99.7 | Minus |
chrX | 22417052 | chrX | 19090365..19090678 | 315..2 | 1540 | 99.4 | Minus |
chrX | 22417052 | chrX | 19087429..19087693 | 772..508 | 1325 | 100 | Minus |
chrX | 22417052 | chrX | 19087143..19087361 | 991..773 | 1095 | 100 | Minus |
chrX | 22417052 | chrX | 19088184..19088378 | 509..315 | 975 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 19196071..19198144 | 3064..991 | 10355 | 100 | Minus |
X | 23542271 | X | 19201464..19201777 | 315..2 | 1555 | 99.7 | Minus |
X | 23542271 | X | 19198517..19198781 | 772..508 | 1325 | 100 | Minus |
X | 23542271 | X | 19198231..19198449 | 991..773 | 1095 | 100 | Minus |
X | 23542271 | X | 19199271..19199465 | 509..315 | 975 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 19204169..19206242 | 3064..991 | 10355 | 99.9 | Minus |
X | 23527363 | X | 19209562..19209875 | 315..2 | 1555 | 99.6 | Minus |
X | 23527363 | X | 19206615..19206879 | 772..508 | 1325 | 100 | Minus |
X | 23527363 | X | 19206329..19206547 | 991..773 | 1095 | 100 | Minus |
X | 23527363 | X | 19207369..19207563 | 509..315 | 975 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6915 | 72..213 | 195 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6699..6858 | 46..213 | 189 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2259..2462 | 21..214 | 183 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6853 | 93..214 | 173 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6883 | 75..214 | 167 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6816..6952 | 75..214 | 160 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6944 | 72..212 | 159 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1101..1170 | 72..141 | 152 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6932 | 75..237 | 151 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..6920 | 72..155 | 151 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2422..2584 | 72..233 | 145 | 58.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3354 | 75..167 | 141 | 61.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1077..1180 | 72..176 | 134 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2507 | 75..214 | 131 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2675 | 72..147 | 130 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1092..1171 | 75..154 | 130 | 62.5 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 211..254 | 1747..1790 | 130 | 77.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1151 | 74..164 | 129 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1591 | 72..143 | 123 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2467..2530 | 72..135 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2422 | 91..213 | 121 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2812..2954 | 75..214 | 121 | 58.6 | Plus |
TART-A | 13424 | TART-A 13424bp | 13130..13191 | 1630..1690 | 118 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6995 | 70..200 | 116 | 56.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19088186..19088377 | 316..507 | 100 | <- | Minus |
chrX | 19084984..19087055 | 992..3062 | 98 | <- | Minus |
chrX | 19087143..19087361 | 773..991 | 100 | <- | Minus |
chrX | 19087429..19087693 | 508..772 | 100 | <- | Minus |
chrX | 19090365..19090678 | 1..315 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..978 | 175..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..978 | 175..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..978 | 175..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..978 | 175..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..978 | 175..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..3061 | 2..3062 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..3061 | 2..3062 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..3061 | 2..3062 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 1..3061 | 2..3062 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7990-RA | 2..3064 | 1..3062 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19196073..19198143 | 992..3062 | 99 | <- | Minus |
X | 19198231..19198449 | 773..991 | 100 | <- | Minus |
X | 19198517..19198781 | 508..772 | 100 | <- | Minus |
X | 19199273..19199464 | 316..507 | 100 | <- | Minus |
X | 19201464..19201777 | 1..315 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19196073..19198143 | 992..3062 | 99 | <- | Minus |
X | 19198231..19198449 | 773..991 | 100 | <- | Minus |
X | 19198517..19198781 | 508..772 | 100 | <- | Minus |
X | 19199273..19199464 | 316..507 | 100 | <- | Minus |
X | 19201464..19201777 | 1..315 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19196073..19198143 | 992..3062 | 99 | <- | Minus |
X | 19198231..19198449 | 773..991 | 100 | <- | Minus |
X | 19198517..19198781 | 508..772 | 100 | <- | Minus |
X | 19199273..19199464 | 316..507 | 100 | <- | Minus |
X | 19201464..19201777 | 1..315 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19090106..19092176 | 992..3062 | 99 | <- | Minus |
arm_X | 19092264..19092482 | 773..991 | 100 | <- | Minus |
arm_X | 19092550..19092814 | 508..772 | 100 | <- | Minus |
arm_X | 19093306..19093497 | 316..507 | 100 | <- | Minus |
arm_X | 19095497..19095810 | 1..315 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19206615..19206879 | 508..772 | 100 | <- | Minus |
X | 19207371..19207562 | 316..507 | 100 | <- | Minus |
X | 19209562..19209875 | 1..315 | 99 | Minus | |
X | 19204171..19206241 | 992..3062 | 99 | <- | Minus |
X | 19206329..19206547 | 773..991 | 100 | <- | Minus |
Translation from 3 to 1151
> RH61091.hyp LRERRARGHNWATAAIGACKLCQIAPSTGARAREAAAATATPQPKSSPAS TPTTEHRMQQSTGAATSSAADSGMGATDLVSRCVGDGGGGGGNSCSGGSS DPAAINTTISSKQADAREPQEQQVAIHYLASFHELCVVTALLPLVTLFTC FVTAYVFQYDDVHETHCRVYNIIPSISAITGVSPQRYFWRFSIALHIGPR IPIAFVYKNYYRSQLRRISPAQVPQTSLLITLILVLNCIEIASLGGVTYI SNRENYPVHERIFITFMVCSLCYMLATIKLNGILNAGQALSEKQLLSIKW KKILFAVSILSTVGLLVFFAKHRFYCHDLAFSWFAFFEYLIAIANMLFHF TIIWDFPSQFMMIVQGPRENLAQYLSNRPKLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7990-PA | 325 | CG7990-PA | 1..325 | 58..382 | 1690 | 100 | Plus |
CG7990-PD | 131 | CG7990-PD | 1..117 | 58..174 | 585 | 96.6 | Plus |
CG3876-PA | 255 | CG3876-PA | 20..237 | 132..356 | 336 | 33.5 | Plus |
CG7990-PC | 54 | CG7990-PC | 1..47 | 58..104 | 243 | 100 | Plus |
Translation from 174 to 1151
> RH61091.pep MQQSTGAATSSAADSGMGATDLVSRCVGDGGGGGGNSCSGGSSDPAAINT TISSKQADAREPQEQQVAIHYLASFHELCVVTALLPLVTLFTCFVTAYVF QYDDVHETHCRVYNIIPSISAITGVSPQRYFWRFSIALHIGPRIPIAFVY KNYYRSQLRRISPAQVPQTSLLITLILVLNCIEIASLGGVTYISNRENYP VHERIFITFMVCSLCYMLATIKLNGILNAGQALSEKQLLSIKWKKILFAV SILSTVGLLVFFAKHRFYCHDLAFSWFAFFEYLIAIANMLFHFTIIWDFP SQFMMIVQGPRENLAQYLSNRPKLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16001-PA | 355 | GF16001-PA | 56..355 | 35..325 | 1351 | 84.7 | Plus |
Dana\GF14823-PA | 255 | GF14823-PA | 20..237 | 75..299 | 319 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18072-PA | 325 | GG18072-PA | 1..325 | 1..325 | 1696 | 97.2 | Plus |
Dere\GG24627-PA | 255 | GG24627-PA | 20..237 | 75..299 | 317 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12034-PA | 345 | GH12034-PA | 34..345 | 7..325 | 1284 | 76.2 | Plus |
Dgri\GH10495-PA | 255 | GH10495-PA | 20..254 | 75..320 | 294 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7990-PA | 325 | CG7990-PA | 1..325 | 1..325 | 1690 | 100 | Plus |
CG7990-PD | 131 | CG7990-PD | 1..117 | 1..117 | 585 | 96.6 | Plus |
PGAP2-PA | 255 | CG3876-PA | 20..237 | 75..299 | 336 | 33.5 | Plus |
CG7990-PC | 54 | CG7990-PC | 1..47 | 1..47 | 243 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14309-PA | 312 | GI14309-PA | 38..312 | 51..325 | 1289 | 85.8 | Plus |
Dmoj\GI18012-PA | 255 | GI18012-PA | 7..239 | 60..301 | 304 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13016-PA | 349 | GL13016-PA | 23..349 | 6..325 | 1269 | 75.8 | Plus |
Dper\GL18632-PA | 255 | GL18632-PA | 35..237 | 90..299 | 296 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25860-PA | 347 | GA25860-PA | 23..347 | 6..325 | 1274 | 77 | Plus |
Dpse\GA17744-PA | 255 | GA17744-PA | 35..237 | 90..299 | 296 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22761-PA | 350 | GM22761-PA | 1..350 | 1..325 | 1682 | 91.7 | Plus |
Dsec\GM16642-PA | 255 | GM16642-PA | 20..237 | 75..299 | 316 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15597-PA | 325 | GD15597-PA | 1..325 | 1..325 | 1722 | 99.1 | Plus |
Dsim\GD22939-PA | 255 | GD22939-PA | 20..237 | 75..299 | 314 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19365-PA | 341 | GJ19365-PA | 22..341 | 7..325 | 1279 | 74.3 | Plus |
Dvir\GJ19643-PA | 255 | GJ19643-PA | 19..237 | 74..299 | 286 | 31.6 | Plus |