Clone RH61230 Report

Search the DGRC for RH61230

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:612
Well:30
Vector:pFlc-1
Associated Gene/TranscriptSelR-RG
Protein status:RH61230.pep: gold
Preliminary Size:1023
Sequenced Size:2269

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6584 2002-10-17 Blastp of sequenced clone
SelR 2008-04-29 Release 5.5 accounting
SelR 2008-08-15 Release 5.9 accounting
SelR 2008-12-18 5.12 accounting

Clone Sequence Records

RH61230.complete Sequence

2269 bp (2269 high quality bases) assembled on 2002-10-17

GenBank Submission: BT001854

> RH61230.complete
GATTCGATTGGCAACGCGAGCCAGCCAGGTGTTTGATTTTCATCGCGTGC
AGCTGTTTTCCCAAGCAGCTTTTTTTGTATTAGTTTTTAATTTTCCACCG
CTGCGTAACATTGCGACGCACGCTTGTTTTCGCCCGCGTTTGGCGCATTC
ATAAACAAAAGGCCAAAAATAGAATCAGCACCATTTAGAGCGCTATTCAG
CAGATTCACGCCAAGACAGCGACAATCCGGACAAAAGGTATTCCGGACCA
GCAGCGACTATGGATAACAAGAGCGAGAAGGTTACGGTGAACAAGGAGGA
GCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAGGAGGCGG
GCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGAGAAGGGC
GTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGGAGACCAA
GTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTAGACAAGG
GCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGTAGTCATTTCGAAA
ACGCTAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCA
TATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTCT
GCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAG
GCGGATCCATCGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGCT
AACCACAAGGAATACCATTACACCCGGAGGAGTAGCCCCATATAGACCAG
CGGTAGATGCTACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAAA
GATATTTAGCTATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAAC
AAAAAAAAACATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGCG
GAACGAGGAGTGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCATT
TGCTATATACTTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAATC
TCTATCTCTATATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACGG
AAATGCGAGTCTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTTT
ACAATCTCACTCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCCC
CTTGCATTCTCATCGTATCTATAGGATATGTATATTGTACGTTAATAAAA
ATTAACCCATTTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTTG
CGCAAGGTTATCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAGT
TTATATGTTTTTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGTT
TTGAATCTACATAGATCATTGAGCTTTTTCCACATACCATATTTCGATCA
TTATACAAGGTCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTAT
GTCTGTGTGAATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCTG
TATTTGGTTATTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTTT
ACTCACGCTCAATTTTCTTTTGATTTCAATAACATAACCCGAATACTTTA
ACCAACATTATATCCATAAACTATATAGAGTGTTTTAAACAATCCAAATA
ATGTGTATTTTCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAAA
AACAAAAAAAAAACTAAATGTACAACGCCTGTAAACGTTTTTTGGGGGTT
TGTTTTGCTAACCAAAAACACGAAAACATTTAACTCATCGCTGAAATTAT
AACACCCGAAAAAACGACACATGAAATGCTTAATTAACCAAAATAACATG
TACGCCAAATCGTTCGGAAAATCATCTATATTCCTGATTCGTCAATTATT
TTCACCGGTTTATGTGACTTCATTTCATATTGTTTCACCTGCCACCCATT
GTTAATTATCGCTCTCTCTCTCTCTCTCTCTGCTGCATCTCCTCCTTCGC
TCTCTGATTTGCACTCCCATTTATTTGCCGTTATTTCTTCGCTCTTTTCT
GTGATTCTTTCTCTGCTTCACATTTATCACCCATTTCACAATCAATTTTC
TATTTCTGTTTGATTTGTTTACACCGAAAAACTTTGAATTAACCTTGCAA
AACGATCAAAAAAATGAATATATTGTAAAAAATGTCAACAAAATGCGCTA
CACAAAAAAAAAAAAAAAA

RH61230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RG 1778 SelR-RG 18..1778 2..1762 8805 100 Plus
SelR-RH 1757 SelR-RH 551..1757 556..1762 6035 100 Plus
SelR-RH 1757 SelR-RH 18..552 2..536 2675 100 Plus
SelR-RB 1208 SelR-RB 36..570 2..536 2675 100 Plus
SelR-RB 1208 SelR-RB 612..674 566..628 165 84.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6689469..6691188 2253..534 8600 100 Minus
chr3R 27901430 chr3R 6693976..6694177 203..2 1010 100 Minus
chr3R 27901430 chr3R 6692344..6692516 373..201 865 100 Minus
chr3R 27901430 chr3R 6692066..6692235 536..367 850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10863916..10865650 2268..534 8660 99.9 Minus
3R 32079331 3R 10868439..10868640 203..2 1010 100 Minus
3R 32079331 3R 10866807..10866979 373..201 865 100 Minus
3R 32079331 3R 10866529..10866698 536..367 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10604747..10606481 2268..534 8660 99.9 Minus
3R 31820162 3R 10609270..10609471 203..2 1010 100 Minus
3R 31820162 3R 10607638..10607810 373..201 865 100 Minus
3R 31820162 3R 10607360..10607529 536..367 850 100 Minus
3R 31820162 3R 10604586..10604648 628..566 165 84.1 Minus
Blast to na_te.dros performed 2019-03-16 04:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 7688..7788 1628..1528 135 61.8 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 867..950 1384..1308 125 65.5 Minus

RH61230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:32:04 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6693976..6694177 1..203 99   Minus
chr3R 6689469..6691185 537..2253 97 <- Minus
chr3R 6692066..6692230 372..536 100 <- Minus
chr3R 6692346..6692513 204..371 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:11 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..474 260..733 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:14 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..474 260..733 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:19 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..474 260..733 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:22 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..474 260..733 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:42:12 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..474 260..733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:02 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 16..1763 1..1747 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:14 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 16..1763 1..1747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:19 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..2254 1..2253 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:22 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 16..1763 1..1747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:42:12 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RG 1..2254 1..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:04 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863931..10865647 537..2253 100 <- Minus
3R 10866529..10866693 372..536 100 <- Minus
3R 10866809..10866976 204..371 100 <- Minus
3R 10868439..10868640 1..203 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:04 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863931..10865647 537..2253 100 <- Minus
3R 10866529..10866693 372..536 100 <- Minus
3R 10866809..10866976 204..371 100 <- Minus
3R 10868439..10868640 1..203 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:04 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863931..10865647 537..2253 100 <- Minus
3R 10866529..10866693 372..536 100 <- Minus
3R 10866809..10866976 204..371 100 <- Minus
3R 10868439..10868640 1..203 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:19 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6692251..6692415 372..536 100 <- Minus
arm_3R 6692531..6692698 204..371 100 <- Minus
arm_3R 6694161..6694362 1..203 99   Minus
arm_3R 6689653..6691369 537..2253 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:27 Download gff for RH61230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10607640..10607807 204..371 100 <- Minus
3R 10609270..10609471 1..203 99   Minus
3R 10604762..10606478 537..2253 100 <- Minus
3R 10607360..10607524 372..536 100 <- Minus

RH61230.hyp Sequence

Translation from 259 to 732

> RH61230.hyp
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG
MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP
STASSKK*

RH61230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PG 157 CG6584-PG 1..157 1..157 847 100 Plus
SelR-PH 150 CG6584-PH 1..150 1..157 799 95.5 Plus
SelR-PJ 192 CG6584-PJ 43..192 1..157 799 95.5 Plus
SelR-PI 155 CG6584-PI 1..141 1..154 671 81.8 Plus
SelR-PA 155 CG6584-PA 1..141 1..154 671 81.8 Plus

RH61230.pep Sequence

Translation from 259 to 732

> RH61230.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG
MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP
STASSKK*

RH61230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16176-PA 251 GF16176-PA 42..175 1..141 717 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17257-PA 238 GG17257-PA 42..175 1..141 724 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18739-PA 200 GH18739-PA 1..134 1..141 703 90.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PG 157 CG6584-PG 1..157 1..157 847 100 Plus
SelR-PH 150 CG6584-PH 1..150 1..157 799 95.5 Plus
SelR-PJ 192 CG6584-PJ 43..192 1..157 799 95.5 Plus
SelR-PI 155 CG6584-PI 1..141 1..154 671 81.8 Plus
SelR-PA 155 CG6584-PA 1..141 1..154 671 81.8 Plus
SelR-PC 197 CG6584-PC 43..183 1..154 671 81.8 Plus
SelR-PB 166 CG6584-PB 1..152 1..154 670 79.7 Plus
SelR-PE 208 CG6584-PE 43..194 1..154 670 79.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24656-PA 211 GI24656-PA 1..134 1..141 704 90.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12062-PA 205 GL12062-PA 1..141 1..141 743 95 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19702-PF 148 GA19702-PF 1..148 1..156 719 85.9 Plus
Dpse\GA19702-PE 203 GA19702-PE 37..182 1..142 649 79.5 Plus
Dpse\GA19702-PB 167 GA19702-PB 1..146 1..142 644 79.5 Plus
Dpse\GA19702-PD 156 GA19702-PD 1..135 1..142 643 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26142-PA 250 GM26142-PA 43..176 1..141 720 93.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20695-PA 251 GD20695-PA 43..177 1..141 698 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24030-PA 200 GJ24030-PA 1..134 1..141 709 91.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13287-PA 209 GK13287-PA 1..136 1..143 707 90.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24659-PA 252 GE24659-PA 45..178 1..141 722 93.6 Plus