BDGP Sequence Production Resources |
Search the DGRC for RH61230
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 612 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SelR-RG |
Protein status: | RH61230.pep: gold |
Preliminary Size: | 1023 |
Sequenced Size: | 2269 |
Gene | Date | Evidence |
---|---|---|
CG6584 | 2002-10-17 | Blastp of sequenced clone |
SelR | 2008-04-29 | Release 5.5 accounting |
SelR | 2008-08-15 | Release 5.9 accounting |
SelR | 2008-12-18 | 5.12 accounting |
2269 bp (2269 high quality bases) assembled on 2002-10-17
GenBank Submission: BT001854
> RH61230.complete GATTCGATTGGCAACGCGAGCCAGCCAGGTGTTTGATTTTCATCGCGTGC AGCTGTTTTCCCAAGCAGCTTTTTTTGTATTAGTTTTTAATTTTCCACCG CTGCGTAACATTGCGACGCACGCTTGTTTTCGCCCGCGTTTGGCGCATTC ATAAACAAAAGGCCAAAAATAGAATCAGCACCATTTAGAGCGCTATTCAG CAGATTCACGCCAAGACAGCGACAATCCGGACAAAAGGTATTCCGGACCA GCAGCGACTATGGATAACAAGAGCGAGAAGGTTACGGTGAACAAGGAGGA GCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAGGAGGCGG GCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGAGAAGGGC GTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGGAGACCAA GTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTAGACAAGG GCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGTAGTCATTTCGAAA ACGCTAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCA TATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTCT GCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAG GCGGATCCATCGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGCT AACCACAAGGAATACCATTACACCCGGAGGAGTAGCCCCATATAGACCAG CGGTAGATGCTACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAAA GATATTTAGCTATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAAC AAAAAAAAACATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGCG GAACGAGGAGTGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCATT TGCTATATACTTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAATC TCTATCTCTATATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACGG AAATGCGAGTCTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTTT ACAATCTCACTCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCCC CTTGCATTCTCATCGTATCTATAGGATATGTATATTGTACGTTAATAAAA ATTAACCCATTTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTTG CGCAAGGTTATCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAGT TTATATGTTTTTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGTT TTGAATCTACATAGATCATTGAGCTTTTTCCACATACCATATTTCGATCA TTATACAAGGTCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTAT GTCTGTGTGAATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCTG TATTTGGTTATTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTTT ACTCACGCTCAATTTTCTTTTGATTTCAATAACATAACCCGAATACTTTA ACCAACATTATATCCATAAACTATATAGAGTGTTTTAAACAATCCAAATA ATGTGTATTTTCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAAA AACAAAAAAAAAACTAAATGTACAACGCCTGTAAACGTTTTTTGGGGGTT TGTTTTGCTAACCAAAAACACGAAAACATTTAACTCATCGCTGAAATTAT AACACCCGAAAAAACGACACATGAAATGCTTAATTAACCAAAATAACATG TACGCCAAATCGTTCGGAAAATCATCTATATTCCTGATTCGTCAATTATT TTCACCGGTTTATGTGACTTCATTTCATATTGTTTCACCTGCCACCCATT GTTAATTATCGCTCTCTCTCTCTCTCTCTCTGCTGCATCTCCTCCTTCGC TCTCTGATTTGCACTCCCATTTATTTGCCGTTATTTCTTCGCTCTTTTCT GTGATTCTTTCTCTGCTTCACATTTATCACCCATTTCACAATCAATTTTC TATTTCTGTTTGATTTGTTTACACCGAAAAACTTTGAATTAACCTTGCAA AACGATCAAAAAAATGAATATATTGTAAAAAATGTCAACAAAATGCGCTA CACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-RG | 1778 | SelR-RG | 18..1778 | 2..1762 | 8805 | 100 | Plus |
SelR-RH | 1757 | SelR-RH | 551..1757 | 556..1762 | 6035 | 100 | Plus |
SelR-RH | 1757 | SelR-RH | 18..552 | 2..536 | 2675 | 100 | Plus |
SelR-RB | 1208 | SelR-RB | 36..570 | 2..536 | 2675 | 100 | Plus |
SelR-RB | 1208 | SelR-RB | 612..674 | 566..628 | 165 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6689469..6691188 | 2253..534 | 8600 | 100 | Minus |
chr3R | 27901430 | chr3R | 6693976..6694177 | 203..2 | 1010 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692344..6692516 | 373..201 | 865 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692066..6692235 | 536..367 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10863916..10865650 | 2268..534 | 8660 | 99.9 | Minus |
3R | 32079331 | 3R | 10868439..10868640 | 203..2 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 373..201 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866529..10866698 | 536..367 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10604747..10606481 | 2268..534 | 8660 | 99.9 | Minus |
3R | 31820162 | 3R | 10609270..10609471 | 203..2 | 1010 | 100 | Minus |
3R | 31820162 | 3R | 10607638..10607810 | 373..201 | 865 | 100 | Minus |
3R | 31820162 | 3R | 10607360..10607529 | 536..367 | 850 | 100 | Minus |
3R | 31820162 | 3R | 10604586..10604648 | 628..566 | 165 | 84.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6693976..6694177 | 1..203 | 99 | Minus | |
chr3R | 6689469..6691185 | 537..2253 | 97 | <- | Minus |
chr3R | 6692066..6692230 | 372..536 | 100 | <- | Minus |
chr3R | 6692346..6692513 | 204..371 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..474 | 260..733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..474 | 260..733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..474 | 260..733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..474 | 260..733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..474 | 260..733 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 16..1763 | 1..1747 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 16..1763 | 1..1747 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..2254 | 1..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 16..1763 | 1..1747 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RG | 1..2254 | 1..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863931..10865647 | 537..2253 | 100 | <- | Minus |
3R | 10866529..10866693 | 372..536 | 100 | <- | Minus |
3R | 10866809..10866976 | 204..371 | 100 | <- | Minus |
3R | 10868439..10868640 | 1..203 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863931..10865647 | 537..2253 | 100 | <- | Minus |
3R | 10866529..10866693 | 372..536 | 100 | <- | Minus |
3R | 10866809..10866976 | 204..371 | 100 | <- | Minus |
3R | 10868439..10868640 | 1..203 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10863931..10865647 | 537..2253 | 100 | <- | Minus |
3R | 10866529..10866693 | 372..536 | 100 | <- | Minus |
3R | 10866809..10866976 | 204..371 | 100 | <- | Minus |
3R | 10868439..10868640 | 1..203 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6692251..6692415 | 372..536 | 100 | <- | Minus |
arm_3R | 6692531..6692698 | 204..371 | 100 | <- | Minus |
arm_3R | 6694161..6694362 | 1..203 | 99 | Minus | |
arm_3R | 6689653..6691369 | 537..2253 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10607640..10607807 | 204..371 | 100 | <- | Minus |
3R | 10609270..10609471 | 1..203 | 99 | Minus | |
3R | 10604762..10606478 | 537..2253 | 100 | <- | Minus |
3R | 10607360..10607524 | 372..536 | 100 | <- | Minus |
Translation from 259 to 732
> RH61230.hyp MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP STASSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PG | 157 | CG6584-PG | 1..157 | 1..157 | 847 | 100 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 1..157 | 799 | 95.5 | Plus |
SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..157 | 799 | 95.5 | Plus |
SelR-PI | 155 | CG6584-PI | 1..141 | 1..154 | 671 | 81.8 | Plus |
SelR-PA | 155 | CG6584-PA | 1..141 | 1..154 | 671 | 81.8 | Plus |
Translation from 259 to 732
> RH61230.pep MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP STASSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16176-PA | 251 | GF16176-PA | 42..175 | 1..141 | 717 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17257-PA | 238 | GG17257-PA | 42..175 | 1..141 | 724 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18739-PA | 200 | GH18739-PA | 1..134 | 1..141 | 703 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PG | 157 | CG6584-PG | 1..157 | 1..157 | 847 | 100 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 1..157 | 799 | 95.5 | Plus |
SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..157 | 799 | 95.5 | Plus |
SelR-PI | 155 | CG6584-PI | 1..141 | 1..154 | 671 | 81.8 | Plus |
SelR-PA | 155 | CG6584-PA | 1..141 | 1..154 | 671 | 81.8 | Plus |
SelR-PC | 197 | CG6584-PC | 43..183 | 1..154 | 671 | 81.8 | Plus |
SelR-PB | 166 | CG6584-PB | 1..152 | 1..154 | 670 | 79.7 | Plus |
SelR-PE | 208 | CG6584-PE | 43..194 | 1..154 | 670 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24656-PA | 211 | GI24656-PA | 1..134 | 1..141 | 704 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12062-PA | 205 | GL12062-PA | 1..141 | 1..141 | 743 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19702-PF | 148 | GA19702-PF | 1..148 | 1..156 | 719 | 85.9 | Plus |
Dpse\GA19702-PE | 203 | GA19702-PE | 37..182 | 1..142 | 649 | 79.5 | Plus |
Dpse\GA19702-PB | 167 | GA19702-PB | 1..146 | 1..142 | 644 | 79.5 | Plus |
Dpse\GA19702-PD | 156 | GA19702-PD | 1..135 | 1..142 | 643 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26142-PA | 250 | GM26142-PA | 43..176 | 1..141 | 720 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20695-PA | 251 | GD20695-PA | 43..177 | 1..141 | 698 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24030-PA | 200 | GJ24030-PA | 1..134 | 1..141 | 709 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13287-PA | 209 | GK13287-PA | 1..136 | 1..143 | 707 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24659-PA | 252 | GE24659-PA | 45..178 | 1..141 | 722 | 93.6 | Plus |