Clone RH61335 Report

Search the DGRC for RH61335

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:613
Well:35
Vector:pFlc-1
Associated Gene/TranscriptPHGPx-RA
Protein status:RH61335.pep: gold
Preliminary Size:737
Sequenced Size:991

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12013 2003-02-13 Blastp of sequenced clone
PHGPx 2008-04-29 Release 5.5 accounting
PHGPx 2008-08-15 Release 5.9 accounting
PHGPx 2008-12-18 5.12 accounting

Clone Sequence Records

RH61335.complete Sequence

991 bp (991 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003748

> RH61335.complete
GATTTACGCTTCGAAAGTGAGAAAGTGCCCAGTTCCATTAGTCATTGCTA
TTACGCCATAACATTTAAAGAATGAGTCTCAGGCAGTTTCAGAACATTTC
CCGCCAGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCC
TCGAGCTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATG
CTTCCCGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGC
CCAGCACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACA
AGAACGCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAAC
GATGTTTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACAT
CGCCTCCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATC
TAAAGGAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGC
AATCAGTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTG
CCACCTGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCG
ATGTGAATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAG
CAGACCGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCT
GGTGAACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATC
CCATGGACATCGCCAAGGACATTGAAAAGCTGCTGTAGATGTGCCCTAGA
CGTTAGCTGCTCTTTTGGACTGTGTTTTCGCGTAGCTTTAGCTTGTAACC
GTCTGGCCACAGATAGTCTTGTGGCCGGCCACATGCACCGCATGGTATAT
ATATTGTCTACTCCTTACTGGTTTTGATTCCCACCCGCAAACATAATAAA
CGCCATTCGTGGTTACCACACTAAGAAAAAAAAAAAAAAAA

RH61335.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1078 PHGPx-RD 59..1030 2..973 4845 99.8 Plus
PHGPx-RC 1212 PHGPx-RC 464..1164 273..973 3505 100 Plus
PHGPx-RA 867 PHGPx-RA 119..819 273..973 3505 100 Plus
PHGPx-RC 1212 PHGPx-RC 59..118 2..61 300 100 Plus
PHGPx-RA 867 PHGPx-RA 59..118 2..61 300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3327656..3328034 595..973 1880 99.7 Plus
chr3L 24539361 chr3L 3327267..3327592 273..598 1585 99.1 Plus
chr3L 24539361 chr3L 3326761..3326971 62..272 1040 99.5 Plus
chr3L 24539361 chr3L 3325717..3325776 2..61 270 96.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3328249..3328627 595..973 1895 100 Plus
3L 28110227 3L 3327860..3328185 273..598 1630 100 Plus
3L 28110227 3L 3327343..3327553 62..272 1040 99.5 Plus
3L 28110227 3L 3326308..3326367 2..61 300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3328249..3328627 595..973 1895 100 Plus
3L 28103327 3L 3327860..3328185 273..598 1630 100 Plus
3L 28103327 3L 3327343..3327553 62..272 1040 99.5 Plus
3L 28103327 3L 3326308..3326367 2..61 300 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:04:35 has no hits.

RH61335.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:05:36 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3325716..3325776 1..61 95 -> Plus
chr3L 3326761..3326971 62..272 99 -> Plus
chr3L 3327267..3327590 273..596 99 -> Plus
chr3L 3327658..3328034 597..975 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:13 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 72..788 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:51 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 72..788 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 72..788 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:02 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 72..788 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:43 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 1..717 72..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:04:13 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 11..982 1..972 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:51 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 11..982 1..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 43..1014 1..972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:03 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 11..982 1..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:43 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 43..1014 1..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:36 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327343..3327553 62..272 99 -> Plus
3L 3326307..3326367 1..61 98 -> Plus
3L 3327860..3328183 273..596 100 -> Plus
3L 3328251..3328627 597..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:36 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327343..3327553 62..272 99 -> Plus
3L 3326307..3326367 1..61 98 -> Plus
3L 3327860..3328183 273..596 100 -> Plus
3L 3328251..3328627 597..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:36 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327343..3327553 62..272 99 -> Plus
3L 3326307..3326367 1..61 98 -> Plus
3L 3327860..3328183 273..596 100 -> Plus
3L 3328251..3328627 597..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:48 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326307..3326367 1..61 98 -> Plus
arm_3L 3327343..3327553 62..272 99 -> Plus
arm_3L 3327860..3328183 273..596 100 -> Plus
arm_3L 3328251..3328627 597..975 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:41 Download gff for RH61335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327343..3327553 62..272 99 -> Plus
3L 3327860..3328183 273..596 100 -> Plus
3L 3328251..3328627 597..975 99   Plus
3L 3326307..3326367 1..61 98 -> Plus

RH61335.pep Sequence

Translation from 71 to 787

> RH61335.pep
MSLRQFQNISRQALRCYSMRRTPGPFLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*

RH61335.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10532-PA 240 GF10532-PA 1..240 1..238 1064 82.9 Plus
Dana\GF13732-PA 195 GF13732-PA 40..191 82..238 451 53.5 Plus
Dana\GF20161-PA 187 GF20161-PA 5..103 101..238 372 58 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15132-PA 265 GG15132-PA 28..265 1..238 1125 95 Plus
Dere\GG20925-PA 193 GG20925-PA 33..191 75..238 433 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15953-PA 245 GH15953-PA 1..245 1..238 962 76 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PD 238 CG12013-PD 1..238 1..238 1232 99.6 Plus
PHGPx-PC 198 CG12013-PC 28..198 68..238 897 100 Plus
PHGPx-PA 169 CG12013-PA 1..169 70..238 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 75..238 403 50.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16605-PA 213 GI16605-PA 32..213 56..238 900 89.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16141-PA 238 GL16141-PA 1..238 1..238 1056 80.2 Plus
Dper\GL10571-PA 201 GL10571-PA 11..196 42..238 461 46.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11336-PA 238 GA11336-PA 1..238 1..238 1056 80.2 Plus
Dpse\GA13504-PA 201 GA13504-PA 37..196 79..238 462 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14565-PA 253 GM14565-PA 16..253 1..238 1185 92 Plus
Dsec\GM19853-PA 193 GM19853-PA 33..191 75..238 424 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13757-PA 196 GD13757-PA 16..190 1..175 845 89.1 Plus
Dsim\GD25340-PA 193 GD25340-PA 33..191 75..238 426 50.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12858-PA 244 GJ12858-PA 1..244 1..238 942 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20508-PA 254 GK20508-PA 27..254 5..238 1020 80 Plus
Dwil\GK19311-PA 194 GK19311-PA 39..190 81..238 432 51.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21358-PA 265 GE21358-PA 28..265 1..238 1123 94.5 Plus
Dyak\GE13862-PA 193 GE13862-PA 39..191 81..238 437 52.5 Plus

RH61335.hyp Sequence

Translation from 71 to 787

> RH61335.hyp
MSLRQFQNISRQALRCYSMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL*

RH61335.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PD 238 CG12013-PD 1..238 1..238 1237 100 Plus
PHGPx-PC 198 CG12013-PC 28..198 68..238 897 100 Plus
PHGPx-PA 169 CG12013-PA 1..169 70..238 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 75..238 403 50.6 Plus