Clone RH61816 Report

Search the DGRC for RH61816

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:618
Well:16
Vector:pFlc-1
Associated Gene/TranscriptCG3091-RA
Protein status:RH61816.pep: gold
Preliminary Size:932
Sequenced Size:1236

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3091 2002-01-01 Sim4 clustering to Release 2
CG3091 2003-01-01 Sim4 clustering to Release 3
CG3091 2003-05-20 Blastp of sequenced clone
CG3091 2008-04-29 Release 5.5 accounting
CG3091 2008-08-15 Release 5.9 accounting
CG3091 2008-12-18 5.12 accounting

Clone Sequence Records

RH61816.complete Sequence

1236 bp (1236 high quality bases) assembled on 2003-05-20

GenBank Submission: BT011016

> RH61816.complete
GAGTGGCTTTCTGCGGCCCCTGAGAGACGCATTGGGCTACAACAATGGAT
AAAGATACAGGGGATAAGGACTCCGCCCCCGAGACCAGCGCTTCGCCAGC
AACTGGATGGAGCGACAAGCTGACGGATCTGGTCGCCTGGTTCGAGGCCA
ATCCCAATCTGCCCGAGAAGATCGAACCAATAGTTATGCTACGATTCCTC
AAGTGCACGGCTTTTGATGTGGAACGCACCAAGGCCCTGGCGGAGCTAAA
TTATTGTATGCGCAATAAGAGCCCACATCTGTTCATGGATCGCAACATGG
AGGACGAGATGACCGCCGAGGGCCTGAGGGTTTCGGACCTTTTGATATTA
CCCGGAGTCACTCCCCAGGGAAATAAGCTCATCTTCTTCCGCATGGCCGA
TCTGGATCCACGAACGCGGAATTCTGTCGAGGAGACCAAAATCTTTGTCA
TGATGAGTGATGCACGATTCACAAAGCCGGATGTAGAGCGAGAAACAGGA
AGCGGAGCTGATTACGTACTAGACGAAGCGGACATTGCCGAGGGCGATGT
TCAGATTGTGGACATTGGGGGCTACACCCTACGCCACCTGGCCTACGTGT
CCATATTCGTGCTGCGTGTTTACATGAAGTTCCTGCAGGAAGCCTATCCC
TCGCGACTCCAGGCCATGCATGTCATCAACTGCCCCACTTACCTGGACAA
GCTCATATCCATGATGTCGCCCTTCCTAAGGGAGGAAGTCCGCAACATGA
TCCGGTACCACACAGAGGGTATGGATAGCCTTTACAAAGAAGTGCCCAGG
GACATGTTGCCGAACGAGTACGGCGGCAAGGCGGGCACTGTAGCGGAACT
CAAGGCGAAAGGCATTCAGTCCATCAGGGACAACGCGGCTTATCTCAGCG
ACGAGCGGTACTGGAAGGTGGCCGCTCAGAGCAAGAGTCGGTGGTCCTGG
TTCTGATATCCTGATCATCGAACGTGATATAAACATAAATGTGATCAAGC
ATCGCGTCTTGCCAAGCGAAGATATCGATTAGTTGGGAAAGTCCCAGAAA
CACTTACAGGTTCTAGAGCTCAGTGAAGCTGGCCCTCCATTAAGAATTCT
TATTTTCATATTTTATTATTTTCTTACCAATTTCTCTATTATCAAATAAG
GGGCTATTGTCGATTGATTGACAGCAATGGGAACAATATACTTGACAAAA
CAATAAATTATATTAATTACAAAAAAAAAAAAAAAA

RH61816.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RA 1380 CG3091-RA 161..1380 2..1221 6100 100 Plus
CG3091.a 1395 CG3091.a 5..1224 2..1221 6100 100 Plus
CG3091.b 1459 CG3091.b 483..1288 416..1221 4030 100 Plus
CG3091.b 1459 CG3091.b 1..415 2..416 2075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2146272..2146605 1220..887 1655 99.7 Minus
chrX 22417052 chrX 2146856..2147189 749..416 1655 99.7 Minus
chrX 22417052 chrX 2147895..2148067 174..2 835 98.8 Minus
chrX 22417052 chrX 2147390..2147555 335..170 815 99.4 Minus
chrX 22417052 chrX 2146663..2146801 887..749 695 100 Minus
chrX 22417052 chrX 2147257..2147338 416..335 395 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:35:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252331..2252665 1221..887 1675 100 Minus
X 23542271 X 2252916..2253249 749..416 1670 100 Minus
X 23542271 X 2253958..2254130 174..2 865 100 Minus
X 23542271 X 2253450..2253615 335..170 815 99.4 Minus
X 23542271 X 2252723..2252861 887..749 695 100 Minus
X 23542271 X 2253317..2253398 416..335 410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2260429..2260763 1221..887 1675 100 Minus
X 23527363 X 2261014..2261347 749..416 1670 100 Minus
X 23527363 X 2262056..2262228 174..2 865 100 Minus
X 23527363 X 2261548..2261713 335..170 815 99.3 Minus
X 23527363 X 2260821..2260959 887..749 695 100 Minus
X 23527363 X 2261415..2261496 416..335 410 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:38:48 has no hits.

RH61816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:39:53 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2147895..2148067 1..174 98   Minus
chrX 2146272..2146605 887..1220 99 <- Minus
chrX 2146664..2146800 750..886 100 <- Minus
chrX 2146856..2147188 417..749 99 <- Minus
chrX 2147257..2147338 335..416 98 <- Minus
chrX 2147391..2147550 175..334 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:24 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 45..956 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:54 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 45..956 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:05:10 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 45..956 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:55 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 45..956 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:09 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 45..956 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:40:22 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..1219 2..1220 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:54 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..1219 2..1220 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:05:10 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..1219 2..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:55 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..1219 2..1220 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:09 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..1219 2..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:53 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
X 2252332..2252665 887..1220 100 <- Minus
X 2252724..2252860 750..886 100 <- Minus
X 2252916..2253248 417..749 100 <- Minus
X 2253317..2253398 335..416 100 <- Minus
X 2253451..2253610 175..334 100 <- Minus
X 2253958..2254130 1..174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:53 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
X 2252332..2252665 887..1220 100 <- Minus
X 2252724..2252860 750..886 100 <- Minus
X 2252916..2253248 417..749 100 <- Minus
X 2253317..2253398 335..416 100 <- Minus
X 2253451..2253610 175..334 100 <- Minus
X 2253958..2254130 1..174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:53 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
X 2252332..2252665 887..1220 100 <- Minus
X 2252724..2252860 750..886 100 <- Minus
X 2252916..2253248 417..749 100 <- Minus
X 2253317..2253398 335..416 100 <- Minus
X 2253451..2253610 175..334 100 <- Minus
X 2253958..2254130 1..174 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:05:10 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2146757..2146893 750..886 100 <- Minus
arm_X 2147484..2147643 175..334 100 <- Minus
arm_X 2146365..2146698 887..1220 100 <- Minus
arm_X 2147991..2148163 1..174 99   Minus
arm_X 2146949..2147281 417..749 100 <- Minus
arm_X 2147350..2147431 335..416 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:49:24 Download gff for RH61816.complete
Subject Subject Range Query Range Percent Splice Strand
X 2260430..2260763 887..1220 100 <- Minus
X 2260822..2260958 750..886 100 <- Minus
X 2261014..2261346 417..749 100 <- Minus
X 2261415..2261496 335..416 100 <- Minus
X 2261549..2261708 175..334 100 <- Minus
X 2262056..2262228 1..174 99   Minus

RH61816.pep Sequence

Translation from 44 to 955

> RH61816.pep
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWF*

RH61816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21967-PA 300 GF21967-PA 1..300 1..303 1139 67.8 Plus
Dana\GF21968-PA 304 GF21968-PA 5..303 6..303 661 40.5 Plus
Dana\GF20915-PA 292 GF20915-PA 11..272 23..298 599 38.8 Plus
Dana\GF17713-PA 308 GF17713-PA 37..275 32..287 392 32 Plus
Dana\GF23257-PA 298 GF23257-PA 24..257 29..280 287 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12632-PA 305 GG12632-PA 1..305 1..303 1477 89.8 Plus
Dere\GG12633-PA 309 GG12633-PA 38..308 26..303 596 39.8 Plus
Dere\GG19584-PA 295 GG19584-PA 14..275 23..298 594 38 Plus
Dere\GG11035-PA 308 GG11035-PA 37..275 32..287 397 32.8 Plus
Dere\GG14766-PA 324 GG14766-PA 42..294 24..290 293 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12309-PA 313 GH12309-PA 28..313 25..303 1080 67.6 Plus
Dgri\GH12310-PA 288 GH12310-PA 17..284 26..302 582 39.9 Plus
Dgri\GH24053-PA 295 GH24053-PA 12..267 23..292 580 40.7 Plus
Dgri\GH22617-PA 308 GH22617-PA 37..275 32..287 381 31.6 Plus
Dgri\GH18936-PA 298 GH18936-PA 24..257 29..280 301 25 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PC 303 CG3091-PC 1..303 1..303 1582 100 Plus
CG3091-PA 303 CG3091-PA 1..303 1..303 1582 100 Plus
CG3823-PA 295 CG3823-PA 16..269 25..292 589 39.9 Plus
CG3191-PC 309 CG3191-PC 20..308 8..303 582 38.3 Plus
CG3191-PA 309 CG3191-PA 20..308 8..303 582 38.3 Plus
CG2663-PC 308 CG2663-PC 37..275 32..287 385 32.4 Plus
CG2663-PA 308 CG2663-PA 37..275 32..287 385 32.4 Plus
CG33966-PA 310 CG33966-PA 28..278 24..288 305 27.6 Plus
CG11550-PA 298 CG11550-PA 27..257 32..280 289 25.3 Plus
CG12926-PA 313 CG12926-PA 33..262 24..269 228 24.3 Plus
CG33514-PA 311 CG33514-PA 37..277 32..286 223 23.4 Plus
CG30339-PA 308 CG30339-PA 36..283 32..295 203 22.6 Plus
CG10300-PA 311 CG10300-PA 31..276 26..287 201 22.8 Plus
CG10657-PA 334 CG10657-PA 60..287 32..272 187 24.9 Plus
CG31636-PB 313 CG31636-PB 36..259 32..269 174 22.5 Plus
CG31636-PA 313 CG31636-PA 36..259 32..269 174 22.5 Plus
CG33965-PA 317 CG33965-PA 18..281 8..286 167 21.6 Plus
pinta-PB 273 CG13848-PB 25..268 25..289 154 23.7 Plus
pinta-PA 273 CG13848-PA 25..268 25..289 154 23.7 Plus
CG10237-PD 301 CG10237-PD 71..267 48..261 151 22.2 Plus
CG10237-PA 301 CG10237-PA 71..267 48..261 151 22.2 Plus
CG10237-PE 306 CG10237-PE 76..272 48..261 151 22.2 Plus
CG10237-PC 306 CG10237-PC 76..272 48..261 151 22.2 Plus
CG5973-PF 311 CG5973-PF 178..274 167..263 151 30.9 Plus
CG5973-PE 311 CG5973-PE 178..274 167..263 151 30.9 Plus
CG5973-PG 311 CG5973-PG 178..274 167..263 151 30.9 Plus
CG5973-PD 311 CG5973-PD 178..274 167..263 151 30.9 Plus
CG5973-PC 311 CG5973-PC 178..274 167..263 151 30.9 Plus
CG5973-PB 311 CG5973-PB 178..274 167..263 151 30.9 Plus
CG5973-PA 311 CG5973-PA 178..274 167..263 151 30.9 Plus
CG10237-PB 324 CG10237-PB 94..290 48..261 151 22.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21451-PA 297 GI21451-PA 16..297 25..303 1070 68.4 Plus
Dmoj\GI21454-PA 288 GI21454-PA 17..287 26..303 624 41.6 Plus
Dmoj\GI21476-PA 305 GI21476-PA 12..267 23..292 564 38.5 Plus
Dmoj\GI23644-PA 308 GI23644-PA 37..275 32..287 381 31.2 Plus
Dmoj\GI24455-PA 298 GI24455-PA 19..239 24..262 295 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13389-PA 295 GL13389-PA 14..295 20..303 1267 79.9 Plus
Dper\GL13391-PA 287 GL13391-PA 15..276 26..297 602 40.1 Plus
Dper\GL26848-PA 3514 GL26848-PA 3249..3486 46..297 533 39.3 Plus
Dper\GL22169-PA 308 GL22169-PA 37..275 32..287 372 32 Plus
Dper\GL23532-PA 298 GL23532-PA 20..238 25..261 293 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22852-PA 295 GA22852-PA 14..295 20..303 1267 79.9 Plus
Dpse\GA22853-PA 287 GA22853-PA 15..276 26..297 603 40.1 Plus
Dpse\GA17712-PA 303 GA17712-PA 17..275 25..297 560 38.1 Plus
Dpse\GA15415-PA 308 GA15415-PA 37..275 32..287 372 32 Plus
Dpse\GA11062-PA 298 GA11062-PA 20..238 25..261 292 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18899-PA 303 GM18899-PA 1..303 1..303 1537 94.1 Plus
Dsec\GM18900-PA 309 GM18900-PA 20..308 8..303 610 39 Plus
Dsec\GM12480-PA 295 GM12480-PA 14..275 23..298 601 38.8 Plus
Dsec\GM10638-PA 308 GM10638-PA 37..275 32..287 394 32.8 Plus
Dsec\GM16424-PA 298 GM16424-PA 27..239 32..262 289 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16379-PA 303 GD16379-PA 1..303 1..303 1516 95 Plus
Dsim\GD19620-PA 308 GD19620-PA 37..275 32..287 394 32.8 Plus
Dsim\GD16370-PA 298 GD16370-PA 24..239 29..262 292 26.1 Plus
Dsim\GD13840-PA 311 GD13840-PA 31..285 26..287 223 27 Plus
Dsim\GD10061-PA 308 GD10061-PA 30..283 26..295 208 23.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16473-PA 282 GJ16473-PA 2..282 26..303 1091 69.4 Plus
Dvir\GJ16475-PA 288 GJ16475-PA 17..287 26..303 613 42.3 Plus
Dvir\GJ16499-PA 295 GJ16499-PA 12..272 23..297 586 40.4 Plus
Dvir\GJ24720-PA 307 GJ24720-PA 36..274 32..287 394 32.4 Plus
Dvir\GJ24121-PA 298 GJ24121-PA 19..257 24..280 283 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16331-PA 296 GK16331-PA 18..296 25..303 1080 66.7 Plus
Dwil\GK16332-PA 291 GK16332-PA 18..290 26..303 612 41 Plus
Dwil\GK19881-PA 298 GK19881-PA 19..277 25..297 584 39.2 Plus
Dwil\GK22841-PA 306 GK22841-PA 35..273 32..287 391 31.6 Plus
Dwil\GK10975-PA 298 GK10975-PA 20..238 25..261 289 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16961-PA 306 GE16961-PA 4..306 2..303 1481 89.1 Plus
Dyak\GE16962-PA 309 GE16962-PA 7..308 3..303 620 38.8 Plus
Dyak\GE16743-PA 295 GE16743-PA 14..280 23..298 591 38.4 Plus
Dyak\GE25285-PA 308 GE25285-PA 37..275 32..287 395 32.8 Plus
Dyak\GE21129-PA 310 GE21129-PA 12..280 8..290 295 26.2 Plus

RH61816.hyp Sequence

Translation from 44 to 955

> RH61816.hyp
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWF*

RH61816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PC 303 CG3091-PC 1..303 1..303 1582 100 Plus
CG3091-PA 303 CG3091-PA 1..303 1..303 1582 100 Plus
CG3823-PA 295 CG3823-PA 16..269 25..292 589 39.9 Plus
CG3191-PC 309 CG3191-PC 20..308 8..303 582 38.3 Plus
CG3191-PA 309 CG3191-PA 20..308 8..303 582 38.3 Plus