Clone RH62508 Report

Search the DGRC for RH62508

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:625
Well:8
Vector:pFlc-1
Associated Gene/TranscriptCG7829-RB
Protein status:RH62508.pep: wuzgold
Sequenced Size:1025

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7829-RB 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

RH62508.complete Sequence

1025 bp assembled on 2011-03-18

GenBank Submission: BT126230.1

> RH62508.complete
GCTACTTTAAAGCGATTCTTTCTCCGTTTAACTGCGAATGATGTACAAGT
TATGGTGGAAATTGCTTCTCCTCCAGGCTTCTGGGTGTCTATCTCTGGAG
AGTCGCCCAGATCCACGCATAGTCGGTGGCTTCCCAGCCGATATCGCCAA
CATTCCGTACATAGTGTCCATCCAACTGTACGGCATCCACCATTGTGGCG
GCTCCATAATAAATAACCACACCATCCTAACGGCTGGCCATTGTCTGAAC
GGAGTGCCACATCGCCTGCTGAAAGTTAAGGTCGGCGGAACGTCGCGCTA
CCGAAAAGATGGGGAACTGTTCTCGGTCGCTGACCTGCAAGTCCACGAGA
ATTTCAATCCCAAGACCATGGACTATGACATCGGTATCATCAGGTTGACC
AAAAACCTAACACTATCTAGAAAGGTTTGAAATACTCTCAGCTAAAATGA
GTTAGTTCAGCAATTTGCTCTGTAGGTAAAGGCCATTCCCATAAACCCAG
AGAGAGTAGCCGAAGGCACCTATGCCACCATTGCCGGCTGGGGATTTAAG
TCCATGAATGGTCCTCCCTCGGACAGTCTGAGATATGCCCGAGTGCCGAT
CGTGAATCAGACCGCCTGCAGGAACCTACTGGGCAAAACTGTGACGGATC
GGATGCTCTGTGCAGGCTACCTCAAGGGCGGCACGGATGCCTGCCAGATG
GACTCCGGTGGACCCTTGTCGGTGAGGGAGCAGCTGGTGGGCATCGTGTC
GTGGGGAGTGGGGTGCGCCCTGGCGGACAAGCCGGGAGTCTACTCCCGCC
TCGATGCACTGCATCCCTGGCTAGACAGGTCTTGAATAAGTCAAAGTAAT
GCAACATACTTGATTCGGGCAGTTTCACTATTTTAGCAGTTGGCACCCAT
GAAAGACGCATAAAAACGTGCACGTAAATGCTTTCTCGCTTAAAGTGAAA
AAATCTACGCGGATTTAATCGTACAAAATAATAAAAACTTTAAGGTTCAT
TAAAAGCCGAAAAAAAAAAAAAAAA

RH62508.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25639312..25640319 1008..2 4930 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29816757..29817764 1008..2 4990 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29557588..29558595 1008..2 5000 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 22:33:23 has no hits.

RH62508.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:34:07 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25639311..25640319 1..1009 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:25 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RB 1..393 38..430 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:58 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..389 38..426 100 == Plus
CG7829-RA 390..762 478..849 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:14 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..389 38..426 100 == Plus
CG7829-RA 390..762 478..849 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:25 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RB 1..644 2..645 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:58 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..414 2..415 100 == Plus
CG7829-RA 415..957 469..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:14 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..414 2..415 100 == Plus
CG7829-RA 415..957 469..1009 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:07 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816756..29817764 1..1009 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:07 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816756..29817764 1..1009 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:07 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816756..29817764 1..1009 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:58 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642478..25643486 1..1009 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:14 Download gff for RH62508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29557587..29558595 1..1009 99   Minus

RH62508.pep Sequence

Translation from 37 to 429

> RH62508.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKV*

RH62508.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16324-PA 250 GF16324-PA 1..129 2..130 457 69 Plus
Dana\GF12546-PA 256 GF12546-PA 28..132 25..130 227 43.4 Plus
Dana\GF12402-PA 256 GF12402-PA 28..132 25..130 220 42.5 Plus
Dana\GF11402-PA 257 GF11402-PA 6..134 4..130 220 36.4 Plus
Dana\GF13692-PA 261 GF13692-PA 34..137 27..130 218 42.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11998-PA 252 GG11998-PA 1..130 1..130 593 85.4 Plus
Dere\epsilonTry-PA 256 GG22660-PA 28..132 25..130 220 41.5 Plus
Dere\GG21582-PA 258 GG21582-PA 27..133 24..130 218 43.5 Plus
Dere\betaTry-PA 253 GG20194-PA 28..132 25..130 216 39.6 Plus
Dere\GG20196-PA 252 GG20196-PA 27..125 27..126 203 45 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22924-PA 256 GH22924-PA 28..132 25..130 226 41.5 Plus
Dgri\GH23079-PA 254 GH23079-PA 9..131 9..130 224 38.2 Plus
Dgri\GH22866-PA 255 GH22866-PA 28..132 25..130 222 43.4 Plus
Dgri\GH22925-PA 254 GH22925-PA 28..132 25..130 211 40.6 Plus
Dgri\GH22927-PA 256 GH22927-PA 28..132 25..130 209 39.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..130 1..130 692 100 Plus
epsilonTry-PA 256 CG18681-PA 28..132 25..130 222 42.5 Plus
gammaTry-PA 253 CG30028-PA 5..132 9..130 207 37.2 Plus
CG30025-PA 253 CG30025-PA 5..132 9..130 207 37.2 Plus
deltaTry-PA 253 CG12351-PA 5..132 9..130 207 37.2 Plus
CG30031-PA 253 CG30031-PA 5..132 9..130 207 37.2 Plus
CG17571-PB 258 CG17571-PB 27..133 24..130 206 42.6 Plus
CG17571-PA 258 CG17571-PA 27..133 24..130 206 42.6 Plus
alphaTry-PA 256 CG18444-PA 28..132 25..130 200 39.6 Plus
iotaTry-PA 252 CG7754-PA 27..124 27..125 196 43.4 Plus
thetaTry-PA 262 CG12385-PA 34..131 27..124 196 43.4 Plus
CG34458-PA 257 CG34458-PA 29..134 25..130 195 35.8 Plus
kappaTry-PC 263 CG12388-PC 7..132 9..127 195 34.9 Plus
betaTry-PB 253 CG18211-PB 5..132 9..130 192 34.9 Plus
betaTry-PA 253 CG18211-PA 5..132 9..130 192 34.9 Plus
CG11192-PB 279 CG11192-PB 7..127 5..127 187 35 Plus
Ser8-PA 260 CG4812-PA 34..137 27..130 186 39 Plus
CG31265-PA 266 CG31265-PA 36..136 27..127 186 37.3 Plus
CG31954-PA 277 CG31954-PA 43..141 20..120 184 42.6 Plus
CG32271-PA 248 CG32271-PA 1..116 2..120 181 31.9 Plus
zetaTry-PA 280 CG12387-PA 29..147 18..127 181 37 Plus
CG9676-PA 251 CG9676-PA 1..131 2..130 180 34.3 Plus
Try29F-PD 267 CG9564-PD 23..141 9..125 180 38.8 Plus
Try29F-PC 267 CG9564-PC 23..141 9..125 180 38.8 Plus
CG17477-PA 267 CG17477-PA 27..126 28..127 177 39.6 Plus
Send1-PA 255 CG17012-PA 26..128 24..130 173 32.7 Plus
Send2-PA 239 CG18125-PA 7..120 10..130 171 37.4 Plus
CG3650-PA 249 CG3650-PA 1..123 5..125 168 31.5 Plus
CG31267-PA 275 CG31267-PA 44..154 27..127 168 34.2 Plus
CG31681-PA 264 CG31681-PA 10..131 9..130 167 35 Plus
CG9294-PB 352 CG9294-PB 100..202 27..126 167 32 Plus
CG32270-PA 259 CG32270-PA 4..129 1..127 165 32.8 Plus
CG17234-PA 251 CG17234-PA 7..133 10..130 163 36.7 Plus
CG32523-PA 262 CG32523-PA 1..141 2..130 160 31.5 Plus
CG13430-PB 267 CG13430-PB 12..135 5..130 160 34.6 Plus
CG13430-PA 267 CG13430-PA 12..135 5..130 160 34.6 Plus
CG32833-PA 268 CG32833-PA 39..139 29..130 159 33 Plus
CG18735-PA 364 CG18735-PA 82..183 27..126 159 30.4 Plus
CG12951-PA 265 CG12951-PA 29..111 27..108 158 36.1 Plus
CG32269-PB 332 CG32269-PB 103..205 22..125 157 35.6 Plus
CG32269-PA 332 CG32269-PA 103..205 22..125 157 35.6 Plus
CG8299-PA 260 CG8299-PA 7..133 9..130 154 35.4 Plus
CG17475-PB 288 CG17475-PB 49..146 27..124 153 34.3 Plus
CG17475-PA 288 CG17475-PA 49..146 27..124 153 34.3 Plus
CG4271-PA 242 CG4271-PA 1..110 10..122 149 32.7 Plus
CG16998-PA 258 CG16998-PA 6..124 9..130 149 28.7 Plus
Phae1-PB 270 CG16996-PB 32..129 24..118 148 35 Plus
Phae1-PA 270 CG16996-PA 32..129 24..118 148 35 Plus
CG32808-PA 284 CG32808-PA 12..135 10..130 146 29.8 Plus
CG43335-PA 281 CG43335-PA 24..143 10..124 144 31.1 Plus
CG31266-PB 282 CG31266-PB 43..161 19..127 144 32.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21244-PA 256 GI21244-PA 28..121 25..119 230 48.4 Plus
Dmoj\GI21243-PA 255 GI21243-PA 28..132 25..130 224 41.5 Plus
Dmoj\GI18413-PA 256 GI18413-PA 28..121 25..119 224 47.4 Plus
Dmoj\GI18414-PA 256 GI18414-PA 28..121 25..119 223 47.4 Plus
Dmoj\GI17438-PA 258 GI17438-PA 12..133 9..130 218 39.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13444-PA 259 GL13444-PA 1..131 2..130 408 61.1 Plus
Dper\GL11685-PA 259 GL11685-PA 9..136 9..130 226 45 Plus
Dper\GL17143-PA 256 GL17143-PA 28..132 25..130 215 39.6 Plus
Dper\GL17142-PA 256 GL17142-PA 28..132 25..130 214 39.6 Plus
Dper\GL17338-PA 256 GL17338-PA 28..132 25..130 213 41.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20613-PA 259 GA20613-PA 20..131 19..130 407 67 Plus
Dpse\GA18449-PA 259 GA18449-PA 9..136 9..130 226 45 Plus
Dpse\GA24980-PA 256 GA24980-PA 28..132 25..130 214 39.6 Plus
Dpse\GA24979-PA 256 GA24979-PA 28..132 25..130 214 39.6 Plus
Dpse\GA15051-PA 256 GA15051-PA 28..132 25..130 213 41.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12217-PA 294 GM12217-PA 55..171 14..130 598 95.7 Plus
Dsec\GM18245-PA 250 GM18245-PA 21..132 22..130 224 39.8 Plus
Dsec\GM23335-PA 200 GM23335-PA 20..126 24..130 219 43.5 Plus
Dsec\GM20439-PA 378 GM20439-PA 28..132 25..130 218 41.5 Plus
Dsec\GM14874-PA 245 GM14874-PA 22..126 23..130 199 38.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17644-PA 211 GD17644-PA 1..130 1..130 612 95.4 Plus
Dsim\GD22851-PA 250 GD22851-PA 21..132 22..130 230 40.7 Plus
Dsim\GD25907-PA 485 GD25907-PA 28..132 25..130 227 42.5 Plus
Dsim\GD15391-PA 253 GD15391-PA 28..132 25..130 225 41.5 Plus
Dsim\GD21711-PA 258 GD21711-PA 27..133 24..130 221 43.5 Plus
Dsim\GD25907-PA 485 GD25907-PA 257..350 25..119 186 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Try2-PA 259 GJ21501-PA 11..133 8..130 224 41.9 Plus
Dvir\GJ20996-PA 256 GJ20996-PA 29..133 26..130 218 39 Plus
Dvir\GJ21048-PA 259 GJ21048-PA 12..136 10..130 216 41.3 Plus
Dvir\GJ20753-PA 258 GJ20753-PA 25..130 22..128 213 42.1 Plus
Dvir\GJ21497-PA 309 GJ21497-PA 77..185 21..130 208 39.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22079-PA 257 GK22079-PA 24..129 25..130 358 64.5 Plus
Dwil\GK21994-PA 256 GK21994-PA 28..132 25..130 226 43.4 Plus
Dwil\GK19007-PA 261 GK19007-PA 33..134 25..126 214 46.2 Plus
Dwil\GK19675-PA 256 GK19675-PA 28..132 25..130 210 40.6 Plus
Dwil\GK19676-PA 244 GK19676-PA 16..120 25..130 206 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10423-PA 253 GE10423-PA 1..131 2..130 614 89.3 Plus
Dyak\GE12353-PA 253 GE12353-PA 5..132 9..130 222 38 Plus
Dyak\GE12601-PA 258 GE12601-PA 27..133 24..130 221 44.4 Plus
Dyak\GE13533-PA 256 GE13533-PA 5..132 9..130 219 38 Plus
Dyak\GE12354-PA 256 GE12354-PA 5..132 9..130 219 38 Plus

RH62508.hyp Sequence

Translation from 37 to 429

> RH62508.hyp
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKV*

RH62508.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..130 1..130 692 100 Plus
epsilonTry-PA 256 CG18681-PA 28..132 25..130 222 42.5 Plus
gammaTry-PA 253 CG30028-PA 5..132 9..130 207 37.2 Plus
deltaTry-PA 253 CG12351-PA 5..132 9..130 207 37.2 Plus
CG30031-PA 253 CG30031-PA 5..132 9..130 207 37.2 Plus