BDGP Sequence Production Resources |
Search the DGRC for RH62559
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 625 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8317-RA |
Protein status: | RH62559.pep: gold |
Preliminary Size: | 693 |
Sequenced Size: | 1047 |
Gene | Date | Evidence |
---|---|---|
CG8317 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8317 | 2003-05-20 | Blastp of sequenced clone |
CG8317 | 2008-04-29 | Release 5.5 accounting |
CG8317 | 2008-08-15 | Release 5.9 accounting |
CG8317 | 2008-12-18 | 5.12 accounting |
1047 bp (1047 high quality bases) assembled on 2003-05-20
GenBank Submission: BT011014
> RH62559.complete GACAGTCGAAGCGCACGCTCAGCGGCGACAGCAACGAGAATCGAAGCCAA CCAAAGCGAATCGATAGCCCCGGGGGCCAACAAGGTGTTAAGCGATCACT GATAACAAACAAACTGACTAACTAATCGATCGATCAGAACGGTTTCGACT ATTCGCGAGTGAAATCTTCAATCTACAATCTGCAATCTGCAATCTACAAT CTTTCATCCGAATTGGAAAAAGTGACTAAGTGCAGACTCGAAACAGGATA CTCCACTCAACGCAACTCGACTAACGCATACCCAGCAAAGATGTTTGCGT ACACTTGGCAACTCGCTCCACTGATCCTGGTCATTCTGGCGACAACGATG ACGACGACAATGGCTGCACCGCAGCAGCAGGAGGTGCCCCACGCCCTGCT GGACATCGAGACGCCCAATCAGTTCAACTACAGTCCCTCGCCGTTGGCAC AGCCGGATAGTCTGCGATCCAAGCCGTACTTTGATTTTCTGAGCACACTG TATGCCCACGATACGGCCAAGTCGAATCTGTTTCGGCCATATTCGGTGCG CCAGCGCAGGGATGCGGATGTCCAGAAGCTGAGTCGTCCGCGACGGGCCA TCGTCTTTCGGCCGCTGTTCGTGTACAAGCAGCAGGAGATTCGGAAGCAG GAGATCAGGGACAGGAATGCCCAGAGGCGTCACGATCTGAACCGTCTGCA GCGGGTGTAGTACACTCCAATCGAATCCAGTGTCCATCCAGCCAATCCGG TTTGGTTTGGCCTTCTACAGGGTCCTCTAGCACTTAGCCACTTAGCCACT TTCGATGCGTCCTAGTTCTAAGTCAAATGCACTGAGCACGAATATAGAGA AAGAGAATGGAGCACTCATCATATTAAATATTATATAATATATATATATA TATACACATTCGCACCAAACACCCACAATCACAACCACAAACACATCCTC GTAGATTAAGGCCCAAATGTTTGTTATGCCACTTGTTATCGCGACGTTTG ATTAAAGCTAACAAAACTGATATCAAAATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 554..617 | 313..379 | 110 | 70.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12461820..12462550 | 312..1031 | 97 | <- | Minus |
chr2R | 12463519..12463828 | 1..311 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..420 | 291..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..420 | 291..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..420 | 291..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..420 | 291..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..420 | 291..710 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..1031 | 2..1031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..1031 | 2..1031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 3..1035 | 1..1031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 1..1031 | 2..1031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8317-RA | 3..1035 | 1..1031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16574579..16575299 | 312..1031 | 99 | <- | Minus |
2R | 16576273..16576582 | 1..311 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16574579..16575299 | 312..1031 | 99 | <- | Minus |
2R | 16576273..16576582 | 1..311 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16574579..16575299 | 312..1031 | 99 | <- | Minus |
2R | 16576273..16576582 | 1..311 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12462084..12462804 | 312..1031 | 99 | <- | Minus |
arm_2R | 12463778..12464087 | 1..311 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16575778..16576498 | 312..1031 | 99 | <- | Minus |
2R | 16577472..16577781 | 1..311 | 99 | Minus |
Translation from 290 to 709
> RH62559.hyp MFAYTWQLAPLILVILATTMTTTMAAPQQQEVPHALLDIETPNQFNYSPS PLAQPDSLRSKPYFDFLSTLYAHDTAKSNLFRPYSVRQRRDADVQKLSRP RRAIVFRPLFVYKQQEIRKQEIRDRNAQRRHDLNRLQRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8317-PA | 139 | CG8317-PA | 1..139 | 1..139 | 716 | 100 | Plus |
CG8317-PB | 152 | CG8317-PB | 1..152 | 1..139 | 692 | 91.4 | Plus |
CG8317-PC | 120 | CG8317-PC | 1..120 | 20..139 | 620 | 100 | Plus |
Translation from 290 to 709
> RH62559.pep MFAYTWQLAPLILVILATTMTTTMAAPQQQEVPHALLDIETPNQFNYSPS PLAQPDSLRSKPYFDFLSTLYAHDTAKSNLFRPYSVRQRRDADVQKLSRP RRAIVFRPLFVYKQQEIRKQEIRDRNAQRRHDLNRLQRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13463-PA | 137 | GF13463-PA | 1..137 | 1..139 | 539 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22260-PA | 140 | GG22260-PA | 1..140 | 1..139 | 623 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20709-PA | 171 | GH20709-PA | 51..157 | 31..122 | 304 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lst-PA | 139 | CG8317-PA | 1..139 | 1..139 | 716 | 100 | Plus |
Lst-PB | 152 | CG8317-PB | 1..152 | 1..139 | 692 | 91.4 | Plus |
Lst-PC | 120 | CG8317-PC | 1..120 | 20..139 | 620 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19070-PA | 118 | GI19070-PA | 5..118 | 27..139 | 323 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17215-PA | 146 | GL17215-PA | 1..139 | 1..132 | 495 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25045-PA | 146 | GA25045-PA | 1..139 | 1..132 | 496 | 72.9 | Plus |
Dpse\GA25045-PC | 149 | GA25045-PC | 5..142 | 3..132 | 469 | 69.6 | Plus |
Dpse\GA25045-PB | 130 | GA25045-PB | 3..123 | 20..132 | 450 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20050-PA | 139 | GM20050-PA | 2..139 | 1..139 | 698 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25531-PA | 139 | GD25531-PA | 2..139 | 1..139 | 654 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20043-PA | 123 | GJ20043-PA | 5..109 | 27..132 | 315 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20896-PA | 145 | GK20896-PA | 1..134 | 1..132 | 448 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14053-PA | 139 | GE14053-PA | 1..139 | 1..139 | 613 | 87.3 | Plus |