Clone RH62806 Report

Search the DGRC for RH62806

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:628
Well:6
Vector:pFlc-1
Associated Gene/TranscriptPrBP-RA
Protein status:RH62806.pep: gold
Preliminary Size:590
Sequenced Size:1153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9296 2001-12-17 Blastp of sequenced clone
CG9296 2002-01-01 Sim4 clustering to Release 2
CG9296 2003-01-01 Sim4 clustering to Release 3
CG9296 2008-04-29 Release 5.5 accounting
CG9296 2008-08-15 Release 5.9 accounting
CG9296 2008-12-18 5.12 accounting

Clone Sequence Records

RH62806.complete Sequence

1153 bp (1153 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071756

> RH62806.complete
GATTTAACTAGTTCACGGCCGAACAGCTGTCTCGGCATTAGAATTAAAAA
TAAACATAATTGATTTTCTGCCCGAAAGTATACGTAAACGCGTAGGCGCT
CCCACCTGGCAGTGCACCCGATTGACCGACTTGCAACCTCCACGGCCACC
GATGGGCTCCGACGACCAGAGTGCCGGGGACAGGATCCAGAAGGGATTCC
AGATCAACTATATGATTCTGCGGGATGCCGACAGCGGAAAAATAATCTGG
CAGGAGAACAAGGACTTCTCGGCACCGGACCAGGAACATGAGGCCCGAGT
GCCGGTGAAAATACTCGACATGCGTGCCGTTTCCCGGGAGATCAACTTCA
GCACCATCGAGTCGATGGAGAACTTTCGCCTGGACCAGAAGGTGCTCTTC
AAGGGCCGCATCATGGAGGAGTGGTTCTTTGAGATGGGATTCGTGGGTGC
CAACACCACCAACACCTGGCAGTCGACAATCGAGGCGGCACCCGAATCCC
AGATGATGCCTGCCAAGGTCTTGAACGGCAATGTGACTATCCAAACCAGT
TTCTACGACAACGAGACACTCATCACCAAATCGGTTGTGCGCCTGTACTA
CATTTAGGCAAATGTGAGTCACCTGCCGTTCTGCTGATCGACCAGGTGTT
CTCGCGTCCACCCACAAGTTTTTTTGGTTGTTCTTCAAGATGTTCTCTAC
AAAACATGCATACTTCGCTTTTGAGTACTTCAGCATTTCAATGCAATTGT
TTGCGCGTTTATGAACTAGTTGTAGTCCAATGCATTTTAATCTAATCTAA
TTTTACGTTTACCACAGTAATATATTAATAAAAAATTAACAAATGTAATT
TGCATAAACCAAGGAGTCTGTCAACTCGAATTCGAACGCAACATGCATGC
TTATGTACAAATCTTTTGTAGACTGTCACATATGGACTAAAAATAGCTGC
CGAACATTGTGTCATTTGAGATAAATTGTATCTATAGATCTCTGTACCAG
TTGTAACCAATCCATAAAGTCTACTTAAGTCTGTTGAAGCTGTATGAGGA
GTAATTCACTCATACAATCGAAAACGTTGTATTAGATATAGCCTAGCTGT
ACGCAATTTGTCAGCAAATATAAACAGATGTTAAAAGAAAAAAAAAAAAA
AAA

RH62806.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-RA 1140 PrBP-RA 2..1140 2..1140 5680 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8683703..8684838 1137..2 5665 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8684815..8685953 1140..2 5680 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8684815..8685953 1140..2 5680 99.9 Minus
Blast to na_te.dros performed 2019-03-16 05:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 597..679 784..862 116 65.1 Plus

RH62806.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:13:44 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8683703..8684838 1..1137 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:37 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 1..456 152..607 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:47 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 1..456 152..607 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:07:46 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 1..456 152..607 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:27 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 1..456 152..607 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:59:30 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 1..456 152..607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:26:56 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 2..1137 2..1137 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:47 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 2..1137 2..1137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:46 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 2..1133 1..1132 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:27 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
CG9296-RA 2..1137 2..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:59:30 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
PrBP-RA 2..1133 1..1132 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:44 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8684818..8685953 1..1137 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:44 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8684818..8685953 1..1137 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:44 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8684818..8685953 1..1137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:46 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8684818..8685953 1..1137 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:54 Download gff for RH62806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8684818..8685953 1..1137 99   Minus

RH62806.pep Sequence

Translation from 151 to 606

> RH62806.pep
MGSDDQSAGDRIQKGFQINYMILRDADSGKIIWQENKDFSAPDQEHEARV
PVKILDMRAVSREINFSTIESMENFRLDQKVLFKGRIMEEWFFEMGFVGA
NTTNTWQSTIEAAPESQMMPAKVLNGNVTIQTSFYDNETLITKSVVRLYY
I*

RH62806.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14360-PA 151 GF14360-PA 1..151 1..151 792 98 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24057-PA 151 GG24057-PA 1..151 1..151 801 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10462-PA 151 GH10462-PA 1..151 1..151 776 95.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-PA 151 CG9296-PA 1..151 1..151 779 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18057-PA 151 GI18057-PA 1..151 1..151 777 96 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26220-PA 151 GL26220-PA 1..151 1..151 784 96.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21678-PA 151 GA21678-PA 1..151 1..151 784 96.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12770-PA 151 GM12770-PA 1..151 1..151 800 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22388-PA 151 GD22388-PA 1..151 1..151 805 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16426-PA 151 GJ16426-PA 1..151 1..151 781 96 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18665-PA 151 GK18665-PA 1..151 1..151 776 96.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10828-PA 151 GE10828-PA 1..151 1..151 805 100 Plus

RH62806.hyp Sequence

Translation from 151 to 606

> RH62806.hyp
MGSDDQSAGDRIQKGFQINYMILRDADSGKIIWQENKDFSAPDQEHEARV
PVKILDMRAVSREINFSTIESMENFRLDQKVLFKGRIMEEWFFEMGFVGA
NTTNTWQSTIEAAPESQMMPAKVLNGNVTIQTSFYDNETLITKSVVRLYY
I*

RH62806.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
PrBP-PA 151 CG9296-PA 1..151 1..151 779 100 Plus