Clone RH62992 Report

Search the DGRC for RH62992

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:629
Well:92
Vector:pFlc-1
Associated Gene/Transcriptsn-RA
Protein status:RH62992.pep: gold
Preliminary Size:126
Sequenced Size:2336

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32858 2001-12-17 Blastp of sequenced clone
CG15331 2002-01-01 Sim4 clustering to Release 2
CG32858 2003-01-01 Sim4 clustering to Release 3
sn 2008-04-29 Release 5.5 accounting
sn 2008-08-15 Release 5.9 accounting
sn 2008-12-18 5.12 accounting

Clone Sequence Records

RH62992.complete Sequence

2336 bp (2336 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071759

> RH62992.complete
GATTTAGACCGAGGTAGTTGCGCAAAGCGGTGAACAGTACGCGTTGTAGC
CGGATCATAATCACCTGGATGACGCGAATCATTACGTCCGGATTGTCCTG
GAACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACA
CCATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGC
CTCAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGG
CCACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGA
CCATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTT
GGGTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTG
GACGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTC
ATCTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAG
AGCGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGA
CGGCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGG
GCGGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCGGCGCCAGT
GAGTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCTC
CATCGGACGCAAGCGATTCGCCCATTTGTCGGAGTCGCAGGACGAGATCC
ATGTGGACGCCAATATTCCTTGGGGCGAGGATACGCTCTTTACGCTGGAG
TTCCGTGCCGAGGAGGGCGGTCGCTATGCTCTGCATACGTGCAACAACAA
ATATCTGAACGCCAATGGAAAATTGCAGGTGGTGTGCAACGAGGATTGCC
TGTTCAGTGCCGAATATCATGGTGGCCATCTGGCGCTGCGCGATCGTCAG
GGTCAGTACTTGTCGCCCATTGGCTCCAAGGCGGTGTTGAAGTCCCGCTC
GTCGTCAGTGACGCGGGATGAGCTCTTCTCGCTGGAGGATTCGCTGCCCC
AGGCTTCCTTTATAGCCGGACTCAATTTGCGATATGTGAGCGTTAAGCAG
GGCGTCGATGTGACGGCCAACCAGGACGAGGTCGGTGAGAACGAGACGTT
CCAGCTGGAGTACGATTGGTCGGCGCACCGTTGGGCCCTCCGCACCACCC
AGGATCGCTACTGGTGTCTGTCGGCGGGCGGTGGCATCCAGGCCACCGGC
AATCGTCGCTGTGCCGACGCTCTCTTCGAGCTGATCTGGCACGGCGATGG
CTCGCTCTCGTTCCGGGCTAACAACGGCAAGTTCTTGGCCACCAAGCGCT
CTGGTCATCTGTTTGCCACCTCGGAGTCGATCGAGGAGATAGCCAAGTTC
TATTTCTACTTGATTAATAGACCAATTCTTGTACTGAAGTGCGAGCAGGG
ATTCGTGGGCTATCGCACGCCCGGCAACCTGAAGCTCGAGTGCAATAAGG
CCACCTATGAAACGATTCTGGTGGAGCGGGCCCAGAAGGGCCTGGTGCAT
CTGAAGGCGCATAGCGGCAAATACTGGCGCATCGAGGGCGAAAGCATCTC
GGTGGATGCCGATGCGCCCAGCGATGGTTTCTTCCTCGAGCTTCGCGAGC
CGACCAGGATCTGCATAAGATCGCAGCAGGGCAAGTACCTGGGCGCTACG
AAGAACGGGGCGTTCAAGCTGCTGGATGATGGAACCGATTCGGCCACACA
GTGGGAGTTCTAGGGCGTGACCACGACCATCCCGAATGGGTTGCTGCACG
CGTCATCAGTATCACAATCACACACATACTTCCCAACCAAGCGGGGATTC
CCTAATTATTGATCCACGCAGCTGAAGCGCCAAGAAGAGTCGCACAAGAA
TTTGATATATCCTAAACAATTGCAAAATGAACGAAATTAAAATGATAGGA
AGGAAACGTTAATAGACCCAAGGAGATACGAGTGAATGAAAAATGAAGAA
ACAAACTTATATATTTATATATAAAGATCTACGTATACATAGAGAGAGAT
TTTTTTTAAACAACCTATTTAGCTTTTTATACGTTTTATACGATGAGAAT
ATCTACAAACGAGAACAAGAAATCTTTTAGCGTAGACAACAAAACAAAAC
TTCTGTCGCGAGTCCTTCCGTTTTATCAAATATATCAGCAACTAGGCCAG
CAAAAATGAAGAAAGACGTAATGGTTATACAAGCACATCATATATACACC
AATATATACATATTCGATTCGTAAAGCTTCACGGAAAAGAAACTAAAAAA
AAAGCGAAGGGAAATAAGAGCAAAAAAAAAAAAAAA

RH62992.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
sn-RG 2322 sn-RG 3..2322 2..2321 11585 99.9 Plus
sn.b 2322 sn.b 3..2322 2..2321 11585 99.9 Plus
sn.c 3423 sn.c 733..2922 147..2336 10935 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7877327..7877980 1668..2321 3240 99.7 Plus
chrX 22417052 chrX 7876365..7876934 851..1420 2790 99.3 Plus
chrX 22417052 chrX 7875884..7876304 430..850 2075 99.5 Plus
chrX 22417052 chrX 7874280..7874562 149..431 1415 100 Plus
chrX 22417052 chrX 7876995..7877251 1413..1669 1240 98.8 Plus
chrX 22417052 chrX 7855923..7856069 2..148 735 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7985432..7986100 1668..2336 3330 99.9 Plus
X 23542271 X 7984470..7985039 851..1420 2850 100 Plus
X 23542271 X 7983988..7984408 430..850 2105 100 Plus
X 23542271 X 7982371..7982653 149..431 1415 100 Plus
X 23542271 X 7985100..7985356 1413..1669 1270 99.6 Plus
X 23542271 X 7964026..7964172 2..148 735 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7993530..7994198 1668..2336 3330 99.8 Plus
X 23527363 X 7992568..7993137 851..1420 2850 100 Plus
X 23527363 X 7992086..7992506 430..850 2105 100 Plus
X 23527363 X 7990469..7990751 149..431 1415 100 Plus
X 23527363 X 7993198..7993454 1413..1669 1270 99.6 Plus
X 23527363 X 7972124..7972270 2..148 735 100 Plus
Blast to na_te.dros performed 2019-03-16 04:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 408..498 1957..2048 142 63 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 6845..7025 1966..2143 142 57.3 Plus
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 133..201 2053..1985 128 68.6 Minus
gypsy10 6006 gypsy10 GYPSY10 6006bp 755..896 1914..2056 127 58.2 Plus

RH62992.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:58 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7855921..7856069 1..148 99 -> Plus
chrX 7874280..7874560 149..429 100 -> Plus
chrX 7875884..7876304 430..850 99 -> Plus
chrX 7876365..7876934 851..1420 99 -> Plus
chrX 7877003..7877251 1421..1669 99 -> Plus
chrX 7877329..7877970 1670..2311 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:42 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RC 1..1695 69..1763 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:00:35 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RD 1..1539 225..1763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:39:04 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RB 1..1539 225..1763 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:14 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RC 1..1695 69..1763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:48:14 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RB 1..1539 225..1763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:41 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RC 1..2322 1..2321 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:00:35 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RG 1..2322 1..2321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:04 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RG 1..2322 1..2321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:15 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RC 1..2322 1..2321 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:48:14 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
sn-RG 1..2322 1..2321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:58 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
X 7964024..7964172 1..148 99 -> Plus
X 7982371..7982651 149..429 100 -> Plus
X 7983988..7984408 430..850 100 -> Plus
X 7984470..7985039 851..1420 100 -> Plus
X 7985108..7985356 1421..1669 100 -> Plus
X 7985434..7986085 1670..2321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:58 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
X 7964024..7964172 1..148 99 -> Plus
X 7982371..7982651 149..429 100 -> Plus
X 7983988..7984408 430..850 100 -> Plus
X 7984470..7985039 851..1420 100 -> Plus
X 7985108..7985356 1421..1669 100 -> Plus
X 7985434..7986085 1670..2321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:58 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
X 7964024..7964172 1..148 99 -> Plus
X 7982371..7982651 149..429 100 -> Plus
X 7983988..7984408 430..850 100 -> Plus
X 7984470..7985039 851..1420 100 -> Plus
X 7985108..7985356 1421..1669 100 -> Plus
X 7985434..7986085 1670..2321 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:04 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7858057..7858205 1..148 99 -> Plus
arm_X 7876404..7876684 149..429 100 -> Plus
arm_X 7878021..7878441 430..850 100 -> Plus
arm_X 7878503..7879072 851..1420 100 -> Plus
arm_X 7879141..7879389 1421..1669 100 -> Plus
arm_X 7879467..7880118 1670..2321 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:00:40 Download gff for RH62992.complete
Subject Subject Range Query Range Percent Splice Strand
X 7990469..7990749 149..429 100 -> Plus
X 7992086..7992506 430..850 100 -> Plus
X 7992568..7993137 851..1420 100 -> Plus
X 7993206..7993454 1421..1669 100 -> Plus
X 7993532..7994183 1670..2321 99   Plus
X 7972122..7972270 1..148 99 -> Plus

RH62992.pep Sequence

Translation from 68 to 1762

> RH62992.pep
MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI
STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA
NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA
GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH
LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG
GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP
IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA
NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD
ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN
RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG
KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK
LLDDGTDSATQWEF*

RH62992.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21295-PA 520 GF21295-PA 1..520 47..564 2755 98.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19678-PA 512 GG19678-PA 1..512 53..564 2749 99.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24440-PA 512 GH24440-PA 1..512 53..564 2704 97.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
sn-PG 512 CG32858-PG 1..512 53..564 2724 100 Plus
sn-PE 512 CG32858-PE 1..512 53..564 2724 100 Plus
sn-PB 512 CG32858-PB 1..512 53..564 2724 100 Plus
sn-PA 512 CG32858-PA 1..512 53..564 2724 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21600-PA 512 GI21600-PA 1..512 53..564 2714 97.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15138-PA 2080 GL15138-PA 1553..2080 43..564 2797 97.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17189-PA 524 GA17189-PA 1..524 47..564 2745 97.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11990-PA 512 GM11990-PA 1..512 53..564 2669 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16540-PA 512 GJ16540-PA 1..512 53..564 2737 98.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25072-PA 512 GK25072-PA 1..512 53..564 2709 97.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\sn-PA 512 GE15753-PA 1..512 53..564 2749 99.8 Plus

RH62992.hyp Sequence

Translation from 68 to 1762

> RH62992.hyp
MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI
STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA
NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA
GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH
LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG
GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP
IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA
NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD
ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN
RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG
KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK
LLDDGTDSATQWEF*

RH62992.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
sn-PG 512 CG32858-PG 1..512 53..564 2724 100 Plus
sn-PE 512 CG32858-PE 1..512 53..564 2724 100 Plus
sn-PB 512 CG32858-PB 1..512 53..564 2724 100 Plus
sn-PA 512 CG32858-PA 1..512 53..564 2724 100 Plus