BDGP Sequence Production Resources |
Search the DGRC for RH62992
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 629 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | sn-RA |
Protein status: | RH62992.pep: gold |
Preliminary Size: | 126 |
Sequenced Size: | 2336 |
Gene | Date | Evidence |
---|---|---|
CG32858 | 2001-12-17 | Blastp of sequenced clone |
CG15331 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32858 | 2003-01-01 | Sim4 clustering to Release 3 |
sn | 2008-04-29 | Release 5.5 accounting |
sn | 2008-08-15 | Release 5.9 accounting |
sn | 2008-12-18 | 5.12 accounting |
2336 bp (2336 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071759
> RH62992.complete GATTTAGACCGAGGTAGTTGCGCAAAGCGGTGAACAGTACGCGTTGTAGC CGGATCATAATCACCTGGATGACGCGAATCATTACGTCCGGATTGTCCTG GAACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACA CCATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGC CTCAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGG CCACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGA CCATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTT GGGTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTG GACGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTC ATCTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAG AGCGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGA CGGCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGG GCGGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCGGCGCCAGT GAGTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCTC CATCGGACGCAAGCGATTCGCCCATTTGTCGGAGTCGCAGGACGAGATCC ATGTGGACGCCAATATTCCTTGGGGCGAGGATACGCTCTTTACGCTGGAG TTCCGTGCCGAGGAGGGCGGTCGCTATGCTCTGCATACGTGCAACAACAA ATATCTGAACGCCAATGGAAAATTGCAGGTGGTGTGCAACGAGGATTGCC TGTTCAGTGCCGAATATCATGGTGGCCATCTGGCGCTGCGCGATCGTCAG GGTCAGTACTTGTCGCCCATTGGCTCCAAGGCGGTGTTGAAGTCCCGCTC GTCGTCAGTGACGCGGGATGAGCTCTTCTCGCTGGAGGATTCGCTGCCCC AGGCTTCCTTTATAGCCGGACTCAATTTGCGATATGTGAGCGTTAAGCAG GGCGTCGATGTGACGGCCAACCAGGACGAGGTCGGTGAGAACGAGACGTT CCAGCTGGAGTACGATTGGTCGGCGCACCGTTGGGCCCTCCGCACCACCC AGGATCGCTACTGGTGTCTGTCGGCGGGCGGTGGCATCCAGGCCACCGGC AATCGTCGCTGTGCCGACGCTCTCTTCGAGCTGATCTGGCACGGCGATGG CTCGCTCTCGTTCCGGGCTAACAACGGCAAGTTCTTGGCCACCAAGCGCT CTGGTCATCTGTTTGCCACCTCGGAGTCGATCGAGGAGATAGCCAAGTTC TATTTCTACTTGATTAATAGACCAATTCTTGTACTGAAGTGCGAGCAGGG ATTCGTGGGCTATCGCACGCCCGGCAACCTGAAGCTCGAGTGCAATAAGG CCACCTATGAAACGATTCTGGTGGAGCGGGCCCAGAAGGGCCTGGTGCAT CTGAAGGCGCATAGCGGCAAATACTGGCGCATCGAGGGCGAAAGCATCTC GGTGGATGCCGATGCGCCCAGCGATGGTTTCTTCCTCGAGCTTCGCGAGC CGACCAGGATCTGCATAAGATCGCAGCAGGGCAAGTACCTGGGCGCTACG AAGAACGGGGCGTTCAAGCTGCTGGATGATGGAACCGATTCGGCCACACA GTGGGAGTTCTAGGGCGTGACCACGACCATCCCGAATGGGTTGCTGCACG CGTCATCAGTATCACAATCACACACATACTTCCCAACCAAGCGGGGATTC CCTAATTATTGATCCACGCAGCTGAAGCGCCAAGAAGAGTCGCACAAGAA TTTGATATATCCTAAACAATTGCAAAATGAACGAAATTAAAATGATAGGA AGGAAACGTTAATAGACCCAAGGAGATACGAGTGAATGAAAAATGAAGAA ACAAACTTATATATTTATATATAAAGATCTACGTATACATAGAGAGAGAT TTTTTTTAAACAACCTATTTAGCTTTTTATACGTTTTATACGATGAGAAT ATCTACAAACGAGAACAAGAAATCTTTTAGCGTAGACAACAAAACAAAAC TTCTGTCGCGAGTCCTTCCGTTTTATCAAATATATCAGCAACTAGGCCAG CAAAAATGAAGAAAGACGTAATGGTTATACAAGCACATCATATATACACC AATATATACATATTCGATTCGTAAAGCTTCACGGAAAAGAAACTAAAAAA AAAGCGAAGGGAAATAAGAGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 7877327..7877980 | 1668..2321 | 3240 | 99.7 | Plus |
chrX | 22417052 | chrX | 7876365..7876934 | 851..1420 | 2790 | 99.3 | Plus |
chrX | 22417052 | chrX | 7875884..7876304 | 430..850 | 2075 | 99.5 | Plus |
chrX | 22417052 | chrX | 7874280..7874562 | 149..431 | 1415 | 100 | Plus |
chrX | 22417052 | chrX | 7876995..7877251 | 1413..1669 | 1240 | 98.8 | Plus |
chrX | 22417052 | chrX | 7855923..7856069 | 2..148 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 7985432..7986100 | 1668..2336 | 3330 | 99.9 | Plus |
X | 23542271 | X | 7984470..7985039 | 851..1420 | 2850 | 100 | Plus |
X | 23542271 | X | 7983988..7984408 | 430..850 | 2105 | 100 | Plus |
X | 23542271 | X | 7982371..7982653 | 149..431 | 1415 | 100 | Plus |
X | 23542271 | X | 7985100..7985356 | 1413..1669 | 1270 | 99.6 | Plus |
X | 23542271 | X | 7964026..7964172 | 2..148 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 7993530..7994198 | 1668..2336 | 3330 | 99.8 | Plus |
X | 23527363 | X | 7992568..7993137 | 851..1420 | 2850 | 100 | Plus |
X | 23527363 | X | 7992086..7992506 | 430..850 | 2105 | 100 | Plus |
X | 23527363 | X | 7990469..7990751 | 149..431 | 1415 | 100 | Plus |
X | 23527363 | X | 7993198..7993454 | 1413..1669 | 1270 | 99.6 | Plus |
X | 23527363 | X | 7972124..7972270 | 2..148 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Kepler | 722 | Dbuz\Kepler KEPLER 722bp | 408..498 | 1957..2048 | 142 | 63 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 6845..7025 | 1966..2143 | 142 | 57.3 | Plus |
Dwil\Vege | 884 | Dwil\Vege VEGE 884bp Derived from AF518730. | 133..201 | 2053..1985 | 128 | 68.6 | Minus |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 755..896 | 1914..2056 | 127 | 58.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 7855921..7856069 | 1..148 | 99 | -> | Plus |
chrX | 7874280..7874560 | 149..429 | 100 | -> | Plus |
chrX | 7875884..7876304 | 430..850 | 99 | -> | Plus |
chrX | 7876365..7876934 | 851..1420 | 99 | -> | Plus |
chrX | 7877003..7877251 | 1421..1669 | 99 | -> | Plus |
chrX | 7877329..7877970 | 1670..2311 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RC | 1..1695 | 69..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RD | 1..1539 | 225..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RB | 1..1539 | 225..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RC | 1..1695 | 69..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RB | 1..1539 | 225..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RC | 1..2322 | 1..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RG | 1..2322 | 1..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RG | 1..2322 | 1..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RC | 1..2322 | 1..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sn-RG | 1..2322 | 1..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7964024..7964172 | 1..148 | 99 | -> | Plus |
X | 7982371..7982651 | 149..429 | 100 | -> | Plus |
X | 7983988..7984408 | 430..850 | 100 | -> | Plus |
X | 7984470..7985039 | 851..1420 | 100 | -> | Plus |
X | 7985108..7985356 | 1421..1669 | 100 | -> | Plus |
X | 7985434..7986085 | 1670..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7964024..7964172 | 1..148 | 99 | -> | Plus |
X | 7982371..7982651 | 149..429 | 100 | -> | Plus |
X | 7983988..7984408 | 430..850 | 100 | -> | Plus |
X | 7984470..7985039 | 851..1420 | 100 | -> | Plus |
X | 7985108..7985356 | 1421..1669 | 100 | -> | Plus |
X | 7985434..7986085 | 1670..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7964024..7964172 | 1..148 | 99 | -> | Plus |
X | 7982371..7982651 | 149..429 | 100 | -> | Plus |
X | 7983988..7984408 | 430..850 | 100 | -> | Plus |
X | 7984470..7985039 | 851..1420 | 100 | -> | Plus |
X | 7985108..7985356 | 1421..1669 | 100 | -> | Plus |
X | 7985434..7986085 | 1670..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 7858057..7858205 | 1..148 | 99 | -> | Plus |
arm_X | 7876404..7876684 | 149..429 | 100 | -> | Plus |
arm_X | 7878021..7878441 | 430..850 | 100 | -> | Plus |
arm_X | 7878503..7879072 | 851..1420 | 100 | -> | Plus |
arm_X | 7879141..7879389 | 1421..1669 | 100 | -> | Plus |
arm_X | 7879467..7880118 | 1670..2321 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7990469..7990749 | 149..429 | 100 | -> | Plus |
X | 7992086..7992506 | 430..850 | 100 | -> | Plus |
X | 7992568..7993137 | 851..1420 | 100 | -> | Plus |
X | 7993206..7993454 | 1421..1669 | 100 | -> | Plus |
X | 7993532..7994183 | 1670..2321 | 99 | Plus | |
X | 7972122..7972270 | 1..148 | 99 | -> | Plus |
Translation from 68 to 1762
> RH62992.pep MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK LLDDGTDSATQWEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21295-PA | 520 | GF21295-PA | 1..520 | 47..564 | 2755 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19678-PA | 512 | GG19678-PA | 1..512 | 53..564 | 2749 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24440-PA | 512 | GH24440-PA | 1..512 | 53..564 | 2704 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sn-PG | 512 | CG32858-PG | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PE | 512 | CG32858-PE | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PB | 512 | CG32858-PB | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PA | 512 | CG32858-PA | 1..512 | 53..564 | 2724 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21600-PA | 512 | GI21600-PA | 1..512 | 53..564 | 2714 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15138-PA | 2080 | GL15138-PA | 1553..2080 | 43..564 | 2797 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17189-PA | 524 | GA17189-PA | 1..524 | 47..564 | 2745 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11990-PA | 512 | GM11990-PA | 1..512 | 53..564 | 2669 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16540-PA | 512 | GJ16540-PA | 1..512 | 53..564 | 2737 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25072-PA | 512 | GK25072-PA | 1..512 | 53..564 | 2709 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\sn-PA | 512 | GE15753-PA | 1..512 | 53..564 | 2749 | 99.8 | Plus |
Translation from 68 to 1762
> RH62992.hyp MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK LLDDGTDSATQWEF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sn-PG | 512 | CG32858-PG | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PE | 512 | CG32858-PE | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PB | 512 | CG32858-PB | 1..512 | 53..564 | 2724 | 100 | Plus |
sn-PA | 512 | CG32858-PA | 1..512 | 53..564 | 2724 | 100 | Plus |