BDGP Sequence Production Resources |
Search the DGRC for RH63541
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 635 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11594-RA |
Protein status: | RH63541.pep: gold |
Preliminary Size: | 2602 |
Sequenced Size: | 1931 |
Gene | Date | Evidence |
---|---|---|
CG11594 | 2002-11-20 | Blastp of sequenced clone |
CG11594 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11594 | 2008-04-29 | Release 5.5 accounting |
CG11594 | 2008-08-15 | Release 5.9 accounting |
CG11594 | 2008-12-18 | 5.12 accounting |
1931 bp (1931 high quality bases) assembled on 2002-11-20
GenBank Submission: BT003176
> RH63541.complete GAGTGGATGAGAGCAGCTCGTTGCGACTGGTTGTGCGACAGGTGTCGGAA TAAATAAAAGCAAAAACATTCGACGGCTTTTGTTTGCGCTGATAAACAAC CTGCGCATATGTACAAGCAAAGCAAAATACTGCTCGAATAATTGTTTGTT CAAAACAATCAGGTGATTAGAGGCGTCTGTGACGGAGACGGCGACTTGGA AATGTCATCCGGACCGTTTTTTGTGGGCGTGGACGTGGGCACGGGCAGTG CGAGGGCGGCCCTGGTCGCCTGCGATGGGCGTGTCCTGGAGCAGGCGGTG CAGACGATCCAAACGTGGAATCCTGAGCCGGGCTACTACAACCAGTCATC CGATAATATATGGCAGTCCATCTGCCAGGTGGTGAAGAAAGTCATTGGCG GCGTCGATAAGTCAAAAGTCAAGGGCATTGGCTTCGATGCCACCTGCTCC TTGGTGGTTCTGGGCCCCCAGGGATCGCCGCTGACGGTGAGCAAGTCCGG TGAGGCGGAGCAGAACATAATCCTCTGGATGGACCATCGTGCCGAGCAGG AAACCCAAGAGATCAATGCCTTCAAGCACTCGCTGCTGAAATATGTGGGT GGTCAGGTTTCGCTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAG GAATCTGTCACAGACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCG ACTTTCTGACCTGGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCG GTGGTGTGCAAGTGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGA GTTCCTGAAGCAGGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGA AATTGGGCAGTGATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTC ACGGCCAAGGCTGCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAG CACCTCCCTAATCGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCC GCTCAAAGGAGTCCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTG ATTGCCGGTACATCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTT CGCACAAGGTGTTTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACT TCCTAAACGAGGGTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTC CTCAAGTCGCATGAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGA TAAGTTTATCTACCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAG CTCGAGGATTAAGCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGG CCGGACTTGCATGGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGG AGTGATTACTGGACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCA AATACTTGGCGTTCGTCCAAGCTCTGGCTTACGGCACACGTCACATTATT GAAAACCTTTACCAGTACGGTAGAGCTCCCTTTCAAACGCTACTTTTCTG CGGGGGATTGGCCAAGAATCCTCTGTACGTACAATGTCATGCGGACATTT GCAATCTGCCCGCACTGATTCCGGATGAACAGGAAATGGTTCTGGTGGGC GCTGCTGCCTTGGGAGCCGCTGCCTCCGGCCACTTCGACAGCTTGGAGAG CGCCTCGAAATCCATGGGTGGCACTGGCCAGCTGGTGAAGCCGAACGCGG AAACGCTTGAGTTCCACAATCGCAAGTACAAGGTGTTCCTGCAGCTGCTG GAGAACCAACGACAGTACAGGCGCATTATGCAGGCAGACACAAAGTGATT TTTTTTCATTCCGATGTCAAGACTTTCAATAATTTTAAATAAATGCCGTA CATGAGCATTGTAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11594-RA | 2670 | CG11594-RA | 839..2602 | 161..1924 | 8805 | 99.9 | Plus |
CG11594.a | 2125 | CG11594.a | 342..2104 | 162..1924 | 8800 | 99.9 | Plus |
CG11594-RB | 2908 | CG11594-RB | 1302..2840 | 386..1924 | 7680 | 99.9 | Plus |
CG11594-RB | 2908 | CG11594-RB | 839..1065 | 161..387 | 1135 | 100 | Plus |
CG11594-RB | 2908 | CG11594-RB | 3..166 | 2..165 | 820 | 100 | Plus |
CG11594-RA | 2670 | CG11594-RA | 3..166 | 2..165 | 820 | 100 | Plus |
CG11594.a | 2125 | CG11594.a | 3..166 | 2..165 | 820 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 4023076..4024094 | 1404..386 | 5095 | 100 | Minus |
chr3L | 24539361 | chr3L | 4024331..4024557 | 387..161 | 1135 | 100 | Minus |
chr3L | 24539361 | chr3L | 4022386..4022604 | 1915..1697 | 1095 | 100 | Minus |
chr3L | 24539361 | chr3L | 4022662..4022880 | 1698..1480 | 1095 | 100 | Minus |
chr3L | 24539361 | chr3L | 4025230..4025393 | 165..2 | 805 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 4022939..4023014 | 1479..1404 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 4023690..4024708 | 1404..386 | 5095 | 100 | Minus |
3L | 28110227 | 3L | 4024945..4025171 | 387..161 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 4022991..4023218 | 1924..1697 | 1125 | 99.6 | Minus |
3L | 28110227 | 3L | 4023276..4023494 | 1698..1480 | 1095 | 100 | Minus |
3L | 28110227 | 3L | 4025844..4026007 | 165..2 | 820 | 100 | Minus |
3L | 28110227 | 3L | 4023553..4023628 | 1479..1404 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 4023690..4024708 | 1404..386 | 5095 | 100 | Minus |
3L | 28103327 | 3L | 4024945..4025171 | 387..161 | 1135 | 100 | Minus |
3L | 28103327 | 3L | 4022991..4023218 | 1924..1697 | 1125 | 99.5 | Minus |
3L | 28103327 | 3L | 4023276..4023494 | 1698..1480 | 1095 | 100 | Minus |
3L | 28103327 | 3L | 4025844..4026007 | 165..2 | 820 | 100 | Minus |
3L | 28103327 | 3L | 4023553..4023628 | 1479..1404 | 380 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4022386..4022602 | 1699..1915 | 100 | <- | Minus |
chr3L | 4022662..4022880 | 1480..1698 | 100 | <- | Minus |
chr3L | 4022939..4023013 | 1405..1479 | 100 | <- | Minus |
chr3L | 4023076..4024092 | 388..1404 | 100 | <- | Minus |
chr3L | 4024331..4024555 | 163..387 | 100 | <- | Minus |
chr3L | 4025233..4025393 | 1..162 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1647 | 202..1848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1647 | 202..1848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1647 | 202..1848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1647 | 202..1848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1647 | 202..1848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1916 | 1..1915 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1916 | 1..1915 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 3..1918 | 1..1915 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 1..1916 | 1..1915 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11594-RC | 3..1918 | 1..1915 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4023000..4023216 | 1699..1915 | 100 | <- | Minus |
3L | 4023276..4023494 | 1480..1698 | 100 | <- | Minus |
3L | 4023553..4023627 | 1405..1479 | 100 | <- | Minus |
3L | 4023690..4024706 | 388..1404 | 100 | <- | Minus |
3L | 4024945..4025169 | 163..387 | 100 | <- | Minus |
3L | 4025847..4026007 | 1..162 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4023000..4023216 | 1699..1915 | 100 | <- | Minus |
3L | 4023276..4023494 | 1480..1698 | 100 | <- | Minus |
3L | 4023553..4023627 | 1405..1479 | 100 | <- | Minus |
3L | 4023690..4024706 | 388..1404 | 100 | <- | Minus |
3L | 4024945..4025169 | 163..387 | 100 | <- | Minus |
3L | 4025847..4026007 | 1..162 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4023000..4023216 | 1699..1915 | 100 | <- | Minus |
3L | 4023276..4023494 | 1480..1698 | 100 | <- | Minus |
3L | 4023553..4023627 | 1405..1479 | 100 | <- | Minus |
3L | 4023690..4024706 | 388..1404 | 100 | <- | Minus |
3L | 4024945..4025169 | 163..387 | 100 | <- | Minus |
3L | 4025847..4026007 | 1..162 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4025847..4026007 | 1..162 | 99 | Minus | |
arm_3L | 4023000..4023216 | 1699..1915 | 100 | <- | Minus |
arm_3L | 4023276..4023494 | 1480..1698 | 100 | <- | Minus |
arm_3L | 4023553..4023627 | 1405..1479 | 100 | <- | Minus |
arm_3L | 4023690..4024706 | 388..1404 | 100 | <- | Minus |
arm_3L | 4024945..4025169 | 163..387 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4023000..4023216 | 1699..1915 | 100 | <- | Minus |
3L | 4023276..4023494 | 1480..1698 | 100 | <- | Minus |
3L | 4023553..4023627 | 1405..1479 | 100 | <- | Minus |
3L | 4023690..4024706 | 388..1404 | 100 | <- | Minus |
3L | 4024945..4025169 | 163..387 | 100 | <- | Minus |
3L | 4025847..4026007 | 1..162 | 99 | Minus |
Translation from 201 to 1847
> RH63541.pep MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSS DNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSG EAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKR NLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKE FLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVS TSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACF AQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGED KFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRG VITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFC GGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLES ASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24780-PA | 548 | GF24780-PA | 4..548 | 2..546 | 2490 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14228-PA | 548 | GG14228-PA | 1..548 | 1..548 | 2842 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16469-PA | 548 | GH16469-PA | 1..547 | 1..547 | 2337 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11594-PE | 548 | CG11594-PE | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PD | 548 | CG11594-PD | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PC | 548 | CG11594-PC | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PA | 548 | CG11594-PA | 1..548 | 1..548 | 2873 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12141-PA | 546 | GI12141-PA | 1..545 | 1..547 | 2031 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16197-PA | 493 | GL16197-PA | 9..493 | 6..548 | 2032 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11088-PA | 551 | GA11088-PA | 9..551 | 6..548 | 2431 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14022-PA | 548 | GM14022-PA | 1..548 | 1..548 | 2906 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13301-PA | 548 | GD13301-PA | 1..548 | 1..548 | 2893 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13420-PA | 546 | GJ13420-PA | 1..545 | 1..547 | 2352 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20463-PA | 550 | GK20463-PA | 5..547 | 3..544 | 2435 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20656-PA | 549 | GE20656-PA | 1..546 | 1..546 | 2856 | 96.9 | Plus |
Translation from 201 to 1847
> RH63541.hyp MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSS DNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSG EAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKR NLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKE FLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVS TSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACF AQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGED KFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRG VITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFC GGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLES ASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11594-PE | 548 | CG11594-PE | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PD | 548 | CG11594-PD | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PC | 548 | CG11594-PC | 1..548 | 1..548 | 2873 | 100 | Plus |
CG11594-PA | 548 | CG11594-PA | 1..548 | 1..548 | 2873 | 100 | Plus |