Clone RH63541 Report

Search the DGRC for RH63541

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:635
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG11594-RA
Protein status:RH63541.pep: gold
Preliminary Size:2602
Sequenced Size:1931

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11594 2002-11-20 Blastp of sequenced clone
CG11594 2003-01-01 Sim4 clustering to Release 3
CG11594 2008-04-29 Release 5.5 accounting
CG11594 2008-08-15 Release 5.9 accounting
CG11594 2008-12-18 5.12 accounting

Clone Sequence Records

RH63541.complete Sequence

1931 bp (1931 high quality bases) assembled on 2002-11-20

GenBank Submission: BT003176

> RH63541.complete
GAGTGGATGAGAGCAGCTCGTTGCGACTGGTTGTGCGACAGGTGTCGGAA
TAAATAAAAGCAAAAACATTCGACGGCTTTTGTTTGCGCTGATAAACAAC
CTGCGCATATGTACAAGCAAAGCAAAATACTGCTCGAATAATTGTTTGTT
CAAAACAATCAGGTGATTAGAGGCGTCTGTGACGGAGACGGCGACTTGGA
AATGTCATCCGGACCGTTTTTTGTGGGCGTGGACGTGGGCACGGGCAGTG
CGAGGGCGGCCCTGGTCGCCTGCGATGGGCGTGTCCTGGAGCAGGCGGTG
CAGACGATCCAAACGTGGAATCCTGAGCCGGGCTACTACAACCAGTCATC
CGATAATATATGGCAGTCCATCTGCCAGGTGGTGAAGAAAGTCATTGGCG
GCGTCGATAAGTCAAAAGTCAAGGGCATTGGCTTCGATGCCACCTGCTCC
TTGGTGGTTCTGGGCCCCCAGGGATCGCCGCTGACGGTGAGCAAGTCCGG
TGAGGCGGAGCAGAACATAATCCTCTGGATGGACCATCGTGCCGAGCAGG
AAACCCAAGAGATCAATGCCTTCAAGCACTCGCTGCTGAAATATGTGGGT
GGTCAGGTTTCGCTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAG
GAATCTGTCACAGACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCG
ACTTTCTGACCTGGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCG
GTGGTGTGCAAGTGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGA
GTTCCTGAAGCAGGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGA
AATTGGGCAGTGATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTC
ACGGCCAAGGCTGCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAG
CACCTCCCTAATCGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCC
GCTCAAAGGAGTCCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTG
ATTGCCGGTACATCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTT
CGCACAAGGTGTTTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACT
TCCTAAACGAGGGTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTC
CTCAAGTCGCATGAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGA
TAAGTTTATCTACCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAG
CTCGAGGATTAAGCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGG
CCGGACTTGCATGGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGG
AGTGATTACTGGACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCA
AATACTTGGCGTTCGTCCAAGCTCTGGCTTACGGCACACGTCACATTATT
GAAAACCTTTACCAGTACGGTAGAGCTCCCTTTCAAACGCTACTTTTCTG
CGGGGGATTGGCCAAGAATCCTCTGTACGTACAATGTCATGCGGACATTT
GCAATCTGCCCGCACTGATTCCGGATGAACAGGAAATGGTTCTGGTGGGC
GCTGCTGCCTTGGGAGCCGCTGCCTCCGGCCACTTCGACAGCTTGGAGAG
CGCCTCGAAATCCATGGGTGGCACTGGCCAGCTGGTGAAGCCGAACGCGG
AAACGCTTGAGTTCCACAATCGCAAGTACAAGGTGTTCCTGCAGCTGCTG
GAGAACCAACGACAGTACAGGCGCATTATGCAGGCAGACACAAAGTGATT
TTTTTTCATTCCGATGTCAAGACTTTCAATAATTTTAAATAAATGCCGTA
CATGAGCATTGTAACAAAAAAAAAAAAAAAA

RH63541.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-RA 2670 CG11594-RA 839..2602 161..1924 8805 99.9 Plus
CG11594.a 2125 CG11594.a 342..2104 162..1924 8800 99.9 Plus
CG11594-RB 2908 CG11594-RB 1302..2840 386..1924 7680 99.9 Plus
CG11594-RB 2908 CG11594-RB 839..1065 161..387 1135 100 Plus
CG11594-RB 2908 CG11594-RB 3..166 2..165 820 100 Plus
CG11594-RA 2670 CG11594-RA 3..166 2..165 820 100 Plus
CG11594.a 2125 CG11594.a 3..166 2..165 820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4023076..4024094 1404..386 5095 100 Minus
chr3L 24539361 chr3L 4024331..4024557 387..161 1135 100 Minus
chr3L 24539361 chr3L 4022386..4022604 1915..1697 1095 100 Minus
chr3L 24539361 chr3L 4022662..4022880 1698..1480 1095 100 Minus
chr3L 24539361 chr3L 4025230..4025393 165..2 805 99.4 Minus
chr3L 24539361 chr3L 4022939..4023014 1479..1404 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4023690..4024708 1404..386 5095 100 Minus
3L 28110227 3L 4024945..4025171 387..161 1135 100 Minus
3L 28110227 3L 4022991..4023218 1924..1697 1125 99.6 Minus
3L 28110227 3L 4023276..4023494 1698..1480 1095 100 Minus
3L 28110227 3L 4025844..4026007 165..2 820 100 Minus
3L 28110227 3L 4023553..4023628 1479..1404 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4023690..4024708 1404..386 5095 100 Minus
3L 28103327 3L 4024945..4025171 387..161 1135 100 Minus
3L 28103327 3L 4022991..4023218 1924..1697 1125 99.5 Minus
3L 28103327 3L 4023276..4023494 1698..1480 1095 100 Minus
3L 28103327 3L 4025844..4026007 165..2 820 100 Minus
3L 28103327 3L 4023553..4023628 1479..1404 380 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:42:03 has no hits.

RH63541.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:43:18 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4022386..4022602 1699..1915 100 <- Minus
chr3L 4022662..4022880 1480..1698 100 <- Minus
chr3L 4022939..4023013 1405..1479 100 <- Minus
chr3L 4023076..4024092 388..1404 100 <- Minus
chr3L 4024331..4024555 163..387 100 <- Minus
chr3L 4025233..4025393 1..162 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:51:54 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1647 202..1848 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:26 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1647 202..1848 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:10:31 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1647 202..1848 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:44 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1647 202..1848 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:41:49 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1647 202..1848 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:02 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1916 1..1915 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:26 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1916 1..1915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:10:31 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 3..1918 1..1915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:44 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 1..1916 1..1915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:49 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 3..1918 1..1915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:18 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4023000..4023216 1699..1915 100 <- Minus
3L 4023276..4023494 1480..1698 100 <- Minus
3L 4023553..4023627 1405..1479 100 <- Minus
3L 4023690..4024706 388..1404 100 <- Minus
3L 4024945..4025169 163..387 100 <- Minus
3L 4025847..4026007 1..162 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:18 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4023000..4023216 1699..1915 100 <- Minus
3L 4023276..4023494 1480..1698 100 <- Minus
3L 4023553..4023627 1405..1479 100 <- Minus
3L 4023690..4024706 388..1404 100 <- Minus
3L 4024945..4025169 163..387 100 <- Minus
3L 4025847..4026007 1..162 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:18 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4023000..4023216 1699..1915 100 <- Minus
3L 4023276..4023494 1480..1698 100 <- Minus
3L 4023553..4023627 1405..1479 100 <- Minus
3L 4023690..4024706 388..1404 100 <- Minus
3L 4024945..4025169 163..387 100 <- Minus
3L 4025847..4026007 1..162 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:10:31 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4025847..4026007 1..162 99   Minus
arm_3L 4023000..4023216 1699..1915 100 <- Minus
arm_3L 4023276..4023494 1480..1698 100 <- Minus
arm_3L 4023553..4023627 1405..1479 100 <- Minus
arm_3L 4023690..4024706 388..1404 100 <- Minus
arm_3L 4024945..4025169 163..387 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:53 Download gff for RH63541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4023000..4023216 1699..1915 100 <- Minus
3L 4023276..4023494 1480..1698 100 <- Minus
3L 4023553..4023627 1405..1479 100 <- Minus
3L 4023690..4024706 388..1404 100 <- Minus
3L 4024945..4025169 163..387 100 <- Minus
3L 4025847..4026007 1..162 99   Minus

RH63541.pep Sequence

Translation from 201 to 1847

> RH63541.pep
MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSS
DNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSG
EAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKR
NLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKE
FLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVS
TSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACF
AQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGED
KFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRG
VITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFC
GGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLES
ASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*

RH63541.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24780-PA 548 GF24780-PA 4..548 2..546 2490 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14228-PA 548 GG14228-PA 1..548 1..548 2842 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16469-PA 548 GH16469-PA 1..547 1..547 2337 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-PE 548 CG11594-PE 1..548 1..548 2873 100 Plus
CG11594-PD 548 CG11594-PD 1..548 1..548 2873 100 Plus
CG11594-PC 548 CG11594-PC 1..548 1..548 2873 100 Plus
CG11594-PA 548 CG11594-PA 1..548 1..548 2873 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12141-PA 546 GI12141-PA 1..545 1..547 2031 66.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16197-PA 493 GL16197-PA 9..493 6..548 2032 73.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11088-PA 551 GA11088-PA 9..551 6..548 2431 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14022-PA 548 GM14022-PA 1..548 1..548 2906 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13301-PA 548 GD13301-PA 1..548 1..548 2893 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13420-PA 546 GJ13420-PA 1..545 1..547 2352 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20463-PA 550 GK20463-PA 5..547 3..544 2435 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20656-PA 549 GE20656-PA 1..546 1..546 2856 96.9 Plus

RH63541.hyp Sequence

Translation from 201 to 1847

> RH63541.hyp
MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSS
DNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSG
EAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKR
NLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKE
FLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVS
TSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACF
AQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGED
KFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRG
VITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFC
GGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLES
ASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*

RH63541.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-PE 548 CG11594-PE 1..548 1..548 2873 100 Plus
CG11594-PD 548 CG11594-PD 1..548 1..548 2873 100 Plus
CG11594-PC 548 CG11594-PC 1..548 1..548 2873 100 Plus
CG11594-PA 548 CG11594-PA 1..548 1..548 2873 100 Plus