Clone RH63657 Report

Search the DGRC for RH63657

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:636
Well:57
Vector:pFlc-1
Associated Gene/TranscriptCG14868-RA
Protein status:RH63657.pep: gold
Preliminary Size:1557
Sequenced Size:1853

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14868 2002-01-01 Sim4 clustering to Release 2
CG14868 2002-06-10 Blastp of sequenced clone
CG14868 2003-01-01 Sim4 clustering to Release 3
CG14868 2008-04-29 Release 5.5 accounting
CG14868 2008-08-15 Release 5.9 accounting
CG14868 2008-12-18 5.12 accounting

Clone Sequence Records

RH63657.complete Sequence

1853 bp (1853 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121711

> RH63657.complete
GATTCACTCTAGCTGTGTGTTTTGGAACAGAATGGGGTCCTTGGAGCCCG
AGAAAGTGTGATACAGCTGGCTCCTCCGGACAGCCCTCAGTTTACAATCA
CTGTCAATGTCAACATCTCGAGCTCGGCAAACGGAAAACCCACTCAAGCA
TTCGGCATGGACTTGGACGATGTGGCTAGTCATCACGGATTCGGTCAACA
TATGGCCACGTACAATGTAGAGACCTCGGCGGTGCACAGGAAACTTCAAA
GCAAGGTGGAGGCACTTCGAATCCTGCGCCAGGAGCTGGAACAGTTTCGC
GTGGAGCGAGACCAGTACAAGCTGGTGGCGGAGACCCTGCAGCTGCGCTA
CTCCGCGCTGAAGAGTAATAGCGAACTTCTGGCTGTCGGTGGATGTGGAG
CCCTCAGCGAGAACTCCAGCCTGGCAGCCCTGCTCCACGAGACGCGCGAG
CAGAACCTAAAGCTCAGCACCGAAGTGGAAGCCCTGAGGCAGCGGCTCAA
CGAGCTGCATGGCGACATGGAACTACTCCGGGAGACGGAGGCCAGCAACA
AGTCGCGGGTACAGGCAATGGCCAGCGAGAATGCCGCTCGCAACAAGGAG
GAGCTGCAGTGGCGTCGTGAGCGGGCAAACTTTATCTGCCACCTGGAGGG
CCTCAAAAAAAGGAATGCCCAGCTGGCCTTCGACCTGAAGGCGGTGATCG
ATGAGAAGGAGGAGCTGATAACCGAGCGGGATGCCTACAAGTGCAAGGCA
CACCGCCTAAATCATGAACTCTTTGTGGCCCTCAGGGCGAAGAAAACGCA
TCCAAGGCTCCTGGACATCGATGGTGTTTTGCTGGAGAACAAGTACCTGC
ATGAACGTGTGAAGATCCAAGACAGCGAACTGGAGCTCACCAAACAGAGC
ATCAATAAGTACAAGACAATGTTGGATGCAAAACGAAAGAAGGGAATTGT
AAAACTTGGCGGTGGGAGCACAAATGAGGACACCATTCTAAGCCCCCGGC
AAGTGAAAACAATCCTCGAGAGTGGCATTGAGCTGCCTCAGAAAACCGAG
AGCTTAAGCGATCTAAAATCCTTGTGTCTGGCCCTGCTGGACAATCTCAA
CGACAAGAACTTGGCCCTGACGCACCAAAAGAAGACCAACAAAATACTGG
CTGGCAAAATGACGGAGCTGGAGCAGCGGTGGCAACAACTCCTCTCCGGA
AACGATGACAACGCAGAGGAGCAGGAGGAGGACGTGGAATATGGTTATGC
GCCTTCGCAGCTGCTCCTCAATGGCTATTGTGCCGCCATGGTAGATGACG
CCGACATCAGCAGCACTCCGTCCATTGAGCCAGATAACGAAGGCGTCGCC
ATTACAGCGGATCATGAAGATTCAAAGAAGCACAAGTCCGTTGAGGCTCT
GCATTCCGACGATGGAATGTCCTCGCTTTCAACGGAGTCCGTGGATTCGT
CTGTGTACGGTGCAGATGTGCAGCCCGATGACTTCCAAAAGTCTTCATCC
GCCACAACAGATTCGGGCAACTGTGGATTGAGCAGCCGCTGCAACGGCAC
GCCACGAATATCCAGTGCAGTGGCACGGGAACGTATGGAGGATCTGAAGG
ACCTGCCGCCTCACCTGGCCACTCTGGTCCAGAAAGCACTTCACGATCTG
GACATGCGGGACTACGAGGCTATGGTGACGATACGAGCAGAGAATCTGGC
GGCTATTCCTTAGAGAAAAACTAGTTCAATTGAGGACTCCCAAAGAAATG
GATGAAACCATATCTCAGTGTTGACAAAAGATATAATACATATATATATT
ACCGCAACAGCGTACAATAAAACCAGATTATATAAAAGAAAAAAAAAAAA
AAA

RH63657.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14868-RA 1906 CG14868-RA 69..1905 1..1837 9185 100 Plus
CG14868.a 1896 CG14868.a 64..1896 1..1833 9165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11192447..11193141 1837..1143 3475 100 Minus
chr3R 27901430 chr3R 11193703..11194287 805..221 2925 100 Minus
chr3R 27901430 chr3R 11194348..11194569 222..1 1110 100 Minus
chr3R 27901430 chr3R 11193198..11193338 1142..1002 705 100 Minus
chr3R 27901430 chr3R 11193541..11193649 915..807 530 99.1 Minus
chr3R 27901430 chr3R 11193395..11193484 1003..914 450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15367808..15368506 1841..1143 3480 99.9 Minus
3R 32079331 3R 15369066..15369652 807..221 2935 100 Minus
3R 32079331 3R 15369713..15369934 222..1 1110 100 Minus
3R 32079331 3R 15368563..15368703 1142..1002 705 100 Minus
3R 32079331 3R 15368906..15369014 915..807 545 100 Minus
3R 32079331 3R 15368760..15368849 1003..914 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15108639..15109337 1841..1143 3480 99.8 Minus
3R 31820162 3R 15109897..15110483 807..221 2935 100 Minus
3R 31820162 3R 15110544..15110765 222..1 1110 100 Minus
3R 31820162 3R 15109394..15109534 1142..1002 705 100 Minus
3R 31820162 3R 15109737..15109845 915..807 545 100 Minus
3R 31820162 3R 15109591..15109680 1003..914 450 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:58:25 has no hits.

RH63657.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:23 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11194348..11194569 1..222 100   Minus
chr3R 11192446..11193141 1143..1838 99 <- Minus
chr3R 11193198..11193336 1004..1142 100 <- Minus
chr3R 11193395..11193482 916..1003 100 <- Minus
chr3R 11193541..11193648 808..915 99 <- Minus
chr3R 11193701..11194285 223..807 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:06 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1557 157..1713 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:38 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1557 157..1713 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:26 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1557 157..1713 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:06 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1557 157..1713 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:53 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1557 157..1713 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:34 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1713 1..1713 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:38 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1833 1..1833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:26 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 12..1844 1..1833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:16:06 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 1..1713 1..1713 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:53 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
CG14868-RA 12..1844 1..1833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:23 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15368906..15369013 808..915 100 <- Minus
3R 15367811..15368506 1143..1838 99 <- Minus
3R 15368563..15368701 1004..1142 100 <- Minus
3R 15368760..15368847 916..1003 100 <- Minus
3R 15369066..15369650 223..807 100 <- Minus
3R 15369713..15369934 1..222 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:23 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15368906..15369013 808..915 100 <- Minus
3R 15367811..15368506 1143..1838 99 <- Minus
3R 15368563..15368701 1004..1142 100 <- Minus
3R 15368760..15368847 916..1003 100 <- Minus
3R 15369066..15369650 223..807 100 <- Minus
3R 15369713..15369934 1..222 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:23 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15368906..15369013 808..915 100 <- Minus
3R 15367811..15368506 1143..1838 99 <- Minus
3R 15368563..15368701 1004..1142 100 <- Minus
3R 15368760..15368847 916..1003 100 <- Minus
3R 15369066..15369650 223..807 100 <- Minus
3R 15369713..15369934 1..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:26 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11193533..11194228 1143..1838 99 <- Minus
arm_3R 11194285..11194423 1004..1142 100 <- Minus
arm_3R 11194482..11194569 916..1003 100 <- Minus
arm_3R 11194628..11194735 808..915 100 <- Minus
arm_3R 11194788..11195372 223..807 100 <- Minus
arm_3R 11195435..11195656 1..222 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:22 Download gff for RH63657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15108642..15109337 1143..1838 99 <- Minus
3R 15109394..15109532 1004..1142 100 <- Minus
3R 15109591..15109678 916..1003 100 <- Minus
3R 15109737..15109844 808..915 100 <- Minus
3R 15109897..15110481 223..807 100 <- Minus
3R 15110544..15110765 1..222 100   Minus

RH63657.pep Sequence

Translation from 156 to 1712

> RH63657.pep
MDLDDVASHHGFGQHMATYNVETSAVHRKLQSKVEALRILRQELEQFRVE
RDQYKLVAETLQLRYSALKSNSELLAVGGCGALSENSSLAALLHETREQN
LKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARNKEEL
QWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEELITERDAYKCKAHR
LNHELFVALRAKKTHPRLLDIDGVLLENKYLHERVKIQDSELELTKQSIN
KYKTMLDAKRKKGIVKLGGGSTNEDTILSPRQVKTILESGIELPQKTESL
SDLKSLCLALLDNLNDKNLALTHQKKTNKILAGKMTELEQRWQQLLSGND
DNAEEQEEDVEYGYAPSQLLLNGYCAAMVDDADISSTPSIEPDNEGVAIT
ADHEDSKKHKSVEALHSDDGMSSLSTESVDSSVYGADVQPDDFQKSSSAT
TDSGNCGLSSRCNGTPRISSAVARERMEDLKDLPPHLATLVQKALHDLDM
RDYEAMVTIRAENLAAIP*

RH63657.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16705-PA 519 GF16705-PA 1..519 1..518 2355 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20574-PA 518 GG20574-PA 1..518 1..518 2683 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18405-PA 548 GH18405-PA 36..547 12..517 1942 76.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14868-PA 518 CG14868-PA 1..518 1..518 2615 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24308-PA 539 GI24308-PA 27..536 10..517 1878 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23062-PA 681 GL23062-PA 164..675 1..490 2066 80.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27129-PB 540 GA27129-PB 1..538 1..517 2217 81.2 Plus
Dpse\GA24050-PA 871 GA24050-PA 331..869 1..517 2201 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25774-PA 167 GM25774-PA 1..148 1..148 745 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15100-PA 278 GD15100-PA 9..276 15..282 1337 96.3 Plus
Dsim\GD20352-PA 261 GD20352-PA 21..261 278..518 1219 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10391-PA 552 GJ10391-PA 35..551 12..517 1971 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11438-PA 541 GK11438-PA 21..540 12..517 2036 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26379-PA 518 GE26379-PA 1..518 1..518 2687 97.7 Plus

RH63657.hyp Sequence

Translation from 156 to 1712

> RH63657.hyp
MDLDDVASHHGFGQHMATYNVETSAVHRKLQSKVEALRILRQELEQFRVE
RDQYKLVAETLQLRYSALKSNSELLAVGGCGALSENSSLAALLHETREQN
LKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARNKEEL
QWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEELITERDAYKCKAHR
LNHELFVALRAKKTHPRLLDIDGVLLENKYLHERVKIQDSELELTKQSIN
KYKTMLDAKRKKGIVKLGGGSTNEDTILSPRQVKTILESGIELPQKTESL
SDLKSLCLALLDNLNDKNLALTHQKKTNKILAGKMTELEQRWQQLLSGND
DNAEEQEEDVEYGYAPSQLLLNGYCAAMVDDADISSTPSIEPDNEGVAIT
ADHEDSKKHKSVEALHSDDGMSSLSTESVDSSVYGADVQPDDFQKSSSAT
TDSGNCGLSSRCNGTPRISSAVARERMEDLKDLPPHLATLVQKALHDLDM
RDYEAMVTIRAENLAAIP*

RH63657.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14868-PA 518 CG14868-PA 1..518 1..518 2615 100 Plus