Clone RH63749 Report

Search the DGRC for RH63749

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:637
Well:49
Vector:pFlc-1
Associated Gene/TranscriptRpL7-like-RA
Protein status:RH63749.pep: gold
Preliminary Size:1127
Sequenced Size:977

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5317 2002-01-01 Sim4 clustering to Release 2
CG5317 2005-03-04 Blastp of sequenced clone
CG5317 2008-04-29 Release 5.5 accounting
CG34164 2008-08-15 Release 5.9 accounting
CG5317 2008-08-15 Release 5.9 accounting
CG5317 2008-12-18 5.12 accounting
CG34164 2008-12-18 5.12 accounting

Clone Sequence Records

RH63749.complete Sequence

977 bp (977 high quality bases) assembled on 2005-03-04

GenBank Submission: BT021218

> RH63749.complete
GACTTATCGCTCCGCGCCCACCTCTATCCTTTTTAGTTATTGTTTTGGTG
CTTGCACGTGTTTTAATTTACTTCGATTAAAAAGCCAAATACCAGCAATG
TCAGACAAATATGCGGTGCCCAACAAATTGCCCGGCAAAACAGTGTCGGT
GCTAAAGCATCGCAAGAGGAGAATTCTGCAGGATGAATCTGTTGTTACGC
AGAAAAGAAATGACCGCATCAAAAAGAGAACCGCCACCAAGAATCACCAC
AAATTCCGCCGTGCCGAATCCTTCGTAATGGGCTACCTGAAAGCAGAGCG
CACGTCCAAGCGGATCAAGCAAACCATTCTGCGCACCAATGTCACCGAAC
AAAGTGCCAAAGCTGCCGACGATTCCAATCCCAAACTGCTCTTCGTGATG
CGCCATGCGGGCAAGAAGATCTTCGACAAGACCACCGCGGATATATTCCG
AACCCTGCGCATGGGCTCGCGCCACAACGCCGTCTTCATGGAGAACACCA
AGGAGAACCAGTTGCTGCTGCGCGTTATCGAACCCTTTGTAGTCTACGGC
AATCCCTCGCTGAGCTCCATTCGCGAGCTGGTCTTCAAGAAGGGCTTCGC
CCGCATCGACGGCAAGAAGACGGCCATCCAGTCGAACACCATGGTGGAGC
AACAGCTGGGCGACAAGGGTGTCATCTGTCTGGAGGATATAATCCACGAA
ATTTGCACAGTGGGTCCAAACTTCGCCGCTGTAAATGAGTTTCTGTGCGC
CTTCACGTTGTCCAGTCCCAGCAATGGTTGGCAAAAGAAGGTATCCGTCT
CGTACAAACGCGGTGGCGAGTACGGCGATCGTGGCACTGCCATCAACGAA
CTGATTGCCCGCTGCCTGTAGAGACCCTAGCCTAGTAAACCCTTAAGTGA
TTGTTCAACCTCTATAACCCATTCTGTAGCTAAGCCCAATACACATCTAT
ATACAAACGCAAAAAAAAAAAAAAAAA

RH63749.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5317-RA 960 CG5317-RA 3..960 2..959 4790 100 Plus
CG5317-RB 1795 CG5317-RB 3..960 2..959 4790 100 Plus
CG34164-RB 1747 CG34164-RB 1..912 48..959 4560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12055176..12055824 109..757 3245 100 Plus
chr2L 23010047 chr2L 12055891..12056093 757..959 1015 100 Plus
chr2L 23010047 chr2L 12055003..12055109 2..108 535 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12056499..12057147 109..757 3245 100 Plus
2L 23513712 2L 12057214..12057416 757..959 1015 100 Plus
2L 23513712 2L 12056326..12056432 2..108 535 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12056499..12057147 109..757 3245 100 Plus
2L 23513712 2L 12057214..12057416 757..959 1015 100 Plus
2L 23513712 2L 12056326..12056432 2..108 535 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:46:15 has no hits.

RH63749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:47:04 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12055001..12055109 1..108 99 -> Plus
chr2L 12055176..12055824 109..757 100 -> Plus
chr2L 12055892..12056093 758..960 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:07 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
CG5317-RB 1..774 98..871 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:25:51 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-like-RB 1..774 98..871 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:18:22 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-like-RA 1..774 98..871 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:09:57 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
CG5317-RB 1..774 98..871 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:48:13 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-like-RA 1..774 98..871 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:28:26 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
CG5317-RB 1..960 1..960 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:25:51 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
CG34164-RB 1..958 2..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:22 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-like-RA 1..936 24..959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:09:57 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
CG5317-RB 1..960 1..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:48:13 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-like-RC 1..958 2..959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:04 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12056324..12056432 1..108 99 -> Plus
2L 12056499..12057147 109..757 100 -> Plus
2L 12057215..12057416 758..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:04 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12056324..12056432 1..108 99 -> Plus
2L 12056499..12057147 109..757 100 -> Plus
2L 12057215..12057416 758..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:04 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12056324..12056432 1..108 99 -> Plus
2L 12056499..12057147 109..757 100 -> Plus
2L 12057215..12057416 758..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:22 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12056324..12056432 1..108 99 -> Plus
arm_2L 12056499..12057147 109..757 100 -> Plus
arm_2L 12057215..12057416 758..960 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:46:23 Download gff for RH63749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12056499..12057147 109..757 100 -> Plus
2L 12057215..12057416 758..960 99   Plus
2L 12056324..12056432 1..108 99 -> Plus

RH63749.hyp Sequence

Translation from 0 to 870

> RH63749.hyp
TYRSAPTSILFSYCFGACTCFNLLRLKSQIPAMSDKYAVPNKLPGKTVSV
LKHRKRRILQDESVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKAER
TSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFR
TLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFA
RIDGKKTAIQSNTMVEQQLGDKGVICLEDIIHEICTVGPNFAAVNEFLCA
FTLSSPSNGWQKKVSVSYKRGGEYGDRGTAINELIARCL*

RH63749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-like-PC 257 CG5317-PC 1..257 33..289 1313 100 Plus
RpL7-like-PB 257 CG5317-PB 1..257 33..289 1313 100 Plus
RpL7-like-PA 257 CG5317-PA 1..257 33..289 1313 100 Plus
RpL7-PB 252 CG4897-PB 1..250 30..287 349 33.3 Plus
RpL7-PA 252 CG4897-PA 1..250 30..287 349 33.3 Plus

RH63749.pep Sequence

Translation from 97 to 870

> RH63749.pep
MSDKYAVPNKLPGKTVSVLKHRKRRILQDESVVTQKRNDRIKKRTATKNH
HKFRRAESFVMGYLKAERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFV
MRHAGKKIFDKTTADIFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVY
GNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQLGDKGVICLEDIIH
EICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGEYGDRGTAIN
ELIARCL*

RH63749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21557-PA 257 GF21557-PA 1..257 1..257 1229 86 Plus
Dana\GF15749-PA 252 GF15749-PA 13..252 10..257 331 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23760-PA 257 GG23760-PA 1..257 1..257 1342 96.9 Plus
Dere\GG10089-PA 252 GG10089-PA 13..252 10..257 334 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11571-PA 257 GH11571-PA 1..257 1..257 1179 82.5 Plus
Dgri\GH11082-PA 252 GH11082-PA 56..252 55..257 310 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-like-PC 257 CG5317-PC 1..257 1..257 1313 100 Plus
RpL7-like-PB 257 CG5317-PB 1..257 1..257 1313 100 Plus
RpL7-like-PA 257 CG5317-PA 1..257 1..257 1313 100 Plus
RpL7-PB 252 CG4897-PB 7..250 4..255 344 33.3 Plus
RpL7-PA 252 CG4897-PA 7..250 4..255 344 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17062-PA 257 GI17062-PA 1..257 1..257 1188 85.6 Plus
Dmoj\GI17599-PA 252 GI17599-PA 56..252 55..257 319 32.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16173-PA 279 GL16173-PA 1..241 1..239 1130 86.7 Plus
Dper\GL16367-PA 238 GL16367-PA 42..234 55..253 313 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18800-PA 257 GA18800-PA 1..257 1..257 1252 88.7 Plus
Dpse\GA18510-PA 252 GA18510-PA 13..252 10..257 322 30.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26715-PA 257 GM26715-PA 1..257 1..257 1353 97.7 Plus
Dsec\GM17982-PA 252 GM17982-PA 13..252 10..257 339 32.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23812-PA 257 GD23812-PA 1..257 1..257 1357 98.4 Plus
Dsim\GD23662-PA 252 GD23662-PA 13..252 10..257 339 32.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17314-PA 257 GJ17314-PA 1..257 1..257 1164 82.1 Plus
Dvir\GJ17944-PA 252 GJ17944-PA 56..252 55..257 320 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21063-PA 257 GK21063-PA 1..257 1..257 1194 85.6 Plus
Dwil\GK18655-PA 252 GK18655-PA 13..252 10..257 327 31.3 Plus
Dwil\GK18411-PA 252 GK18411-PA 13..252 10..257 327 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18566-PA 257 GE18566-PA 1..257 1..257 1334 96.1 Plus
Dyak\RpL7-PA 252 GE18904-PA 13..252 10..257 340 32.5 Plus