Clone RH63812 Report

Search the DGRC for RH63812

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:638
Well:12
Vector:pFlc-1
Associated Gene/TranscriptCG14777-RB
Protein status:RH63812.pep: gold
Preliminary Size:635
Sequenced Size:870

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14777 2002-01-01 Sim4 clustering to Release 2
CG14777 2003-01-01 Sim4 clustering to Release 3
CG14777 2003-01-22 Blastp of sequenced clone
CG14777 2008-04-29 Release 5.5 accounting
CG14777 2008-08-15 Release 5.9 accounting
CG14777 2008-12-18 5.12 accounting

Clone Sequence Records

RH63812.complete Sequence

870 bp (870 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003441

> RH63812.complete
GAGTCAGATACGAGATACGGAAGCCCAGCGAACGGAGGAGGGCGTGAGAT
GCGGACGCCGTGCGTGACCACAGTACAAACTAGATTACATTAAGTTAGAC
TAGCTAATCCCAAGCTGAACCCAGGCCCCTTTCCCGCCGTCTGGACCCCT
CTACCCCGTCCGGAACGCTCTACGAAAGCAACATAAGTGATGGTGCCTGC
GGCCGTCAAGCTGTTGCAGGCCTCGCTGGGCCAGTGGCGTCGAGGGAGCA
AGCTGCATCCCATGGCCAAGGGCGCGCTCACGTACGCGGTCATGTGGCCG
GCGGGCAGCCTGATCCAGCAGGCTATGGAGGGACGCAAGCTGCGCGAGTA
CGACTGGGCCAGGGCGTTACGTTTCAGCTTGTTTGGAGCTCTGTACGTGG
CGCCCACTCTGTACGGCTGGGTGCGGCTCACCAGCGCCATGTGGCCGCAG
ACTAATCTGCGCACGGGCATCGTTAAGGCCATCACGGAACAGCTTTCCTA
CGGACCATTCGCTTGCGTAAGCTTTTTCATGGGAATGAGCTTGCTGGAGC
TGAAGACCTTTAGTCAGGCCGTGGAAGAGACGAAGGAGAAGGCGGCGCCC
ACGTACAAGGTCGGCGTATGCATCTGGCCTATCCTGCAGACCATTAACTT
CTCGCTGGTGCCGGAACACAACCGCGTGGTGTTTGTAAGCATTTGCAGCC
TGATGTGGACAATTTTCCTGGCGTACATGAAGACGCACCACGAGGAGCAG
TCGAACTCCGCGGTTCTGCCTTGTACATAGTTACCTGAGTCGTATTTGTT
ACCTTTTGTGACTCCCAATTGTTAGGCCAATTGTTGAATTAGATAGCGGT
AGCGTAAAAAAAAAAAAAAA

RH63812.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-RB 1143 CG14777-RB 265..1119 2..856 4260 99.8 Plus
CG14777.b 1171 CG14777.b 297..1147 2..856 4175 99.4 Plus
CG14777.a 888 CG14777.a 211..888 178..855 3360 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1362369..1362616 608..855 1195 98.8 Plus
chrX 22417052 chrX 1360678..1360857 2..181 885 99.4 Plus
chrX 22417052 chrX 1361723..1361889 178..344 805 98.8 Plus
chrX 22417052 chrX 1362173..1362308 476..611 680 100 Plus
chrX 22417052 chrX 1361976..1362110 344..478 675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1468445..1468693 608..856 1230 99.6 Plus
X 23542271 X 1466754..1466933 2..181 900 100 Plus
X 23542271 X 1467799..1467965 178..344 820 99.4 Plus
X 23542271 X 1468249..1468384 476..611 680 100 Plus
X 23542271 X 1468052..1468186 344..478 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1476543..1476791 608..856 1230 99.5 Plus
X 23527363 X 1474852..1475031 2..181 900 100 Plus
X 23527363 X 1475897..1476063 178..344 820 99.4 Plus
X 23527363 X 1476347..1476482 476..611 680 100 Plus
X 23527363 X 1476150..1476284 344..478 675 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:47:35 has no hits.

RH63812.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:48:49 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1361976..1362109 344..477 100 -> Plus
chrX 1362175..1362306 478..609 100 -> Plus
chrX 1360677..1360857 1..181 98 -> Plus
chrX 1361727..1361888 182..343 99 -> Plus
chrX 1362371..1362616 610..855 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:10 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RC 1..591 190..780 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:02 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RC 1..591 190..780 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:18:44 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RD 1..591 190..780 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:35:05 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 1..591 190..780 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:48:28 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RE 1..591 190..780 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:54 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 2..855 2..855 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:02 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 2..855 2..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:44 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 5..859 1..855 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:35:06 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 2..855 2..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:48:28 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
CG14777-RB 5..859 1..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:49 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
X 1466753..1466933 1..181 99 -> Plus
X 1467803..1467964 182..343 100 -> Plus
X 1468052..1468185 344..477 100 -> Plus
X 1468251..1468382 478..609 100 -> Plus
X 1468447..1468692 610..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:49 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
X 1466753..1466933 1..181 99 -> Plus
X 1467803..1467964 182..343 100 -> Plus
X 1468052..1468185 344..477 100 -> Plus
X 1468251..1468382 478..609 100 -> Plus
X 1468447..1468692 610..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:49 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
X 1466753..1466933 1..181 99 -> Plus
X 1467803..1467964 182..343 100 -> Plus
X 1468052..1468185 344..477 100 -> Plus
X 1468251..1468382 478..609 100 -> Plus
X 1468447..1468692 610..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:44 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1361836..1361997 182..343 100 -> Plus
arm_X 1362085..1362218 344..477 100 -> Plus
arm_X 1362284..1362415 478..609 100 -> Plus
arm_X 1360786..1360966 1..181 99 -> Plus
arm_X 1362480..1362725 610..855 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:26 Download gff for RH63812.complete
Subject Subject Range Query Range Percent Splice Strand
X 1476545..1476790 610..855 99   Plus
X 1475901..1476062 182..343 100 -> Plus
X 1476150..1476283 344..477 100 -> Plus
X 1476349..1476480 478..609 100 -> Plus
X 1474851..1475031 1..181 99 -> Plus

RH63812.pep Sequence

Translation from 189 to 779

> RH63812.pep
MVPAAVKLLQASLGQWRRGSKLHPMAKGALTYAVMWPAGSLIQQAMEGRK
LREYDWARALRFSLFGALYVAPTLYGWVRLTSAMWPQTNLRTGIVKAITE
QLSYGPFACVSFFMGMSLLELKTFSQAVEETKEKAAPTYKVGVCIWPILQ
TINFSLVPEHNRVVFVSICSLMWTIFLAYMKTHHEEQSNSAVLPCT*

RH63812.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20998-PA 194 GF20998-PA 1..189 1..187 845 83.6 Plus
Dana\GF20999-PA 186 GF20999-PA 17..184 23..188 519 55.4 Plus
Dana\GF16076-PA 176 GF16076-PA 2..168 30..185 379 44.3 Plus
Dana\GF20925-PA 167 GF20925-PA 15..164 33..180 169 30.5 Plus
Dana\GF10257-PA 156 GF10257-PA 26..151 55..181 159 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12857-PA 196 GG12857-PA 1..196 1..196 987 93.9 Plus
Dere\GG12858-PA 186 GG12858-PA 17..181 23..185 548 59.4 Plus
Dere\GG11233-PA 193 GG11233-PA 12..171 23..181 432 46.9 Plus
Dere\GG13550-PA 204 GG13550-PA 13..177 21..181 179 28 Plus
Dere\GG17779-PA 245 GG17779-PA 89..245 38..194 170 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24499-PA 203 GH24499-PA 2..187 6..188 745 73.4 Plus
Dgri\GH24500-PA 193 GH24500-PA 16..188 15..185 524 54.9 Plus
Dgri\GH22820-PA 193 GH22820-PA 16..171 27..181 396 48.1 Plus
Dgri\GH24679-PA 168 GH24679-PA 8..162 27..178 169 27.7 Plus
Dgri\GH24495-PA 245 GH24495-PA 71..214 39..181 158 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-PF 196 CG14777-PF 1..196 1..196 1030 100 Plus
CG14777-PC 196 CG14777-PC 1..196 1..196 1030 100 Plus
CG14777-PE 196 CG14777-PE 1..196 1..196 1030 100 Plus
CG14777-PD 196 CG14777-PD 1..196 1..196 1030 100 Plus
CG14777-PB 196 CG14777-PB 1..196 1..196 1030 100 Plus
CG14778-PA 186 CG14778-PA 17..181 23..185 544 58.8 Plus
plh-PB 193 CG2022-PB 12..171 23..181 434 47.5 Plus
CG12355-PE 204 CG12355-PE 15..177 23..181 188 27.9 Plus
CG12355-PB 204 CG12355-PB 15..177 23..181 188 27.9 Plus
CG11077-PA 168 CG11077-PA 16..163 33..178 170 27 Plus
CG1662-PB 245 CG1662-PB 90..245 39..194 170 26.6 Plus
CG1662-PA 245 CG1662-PA 90..245 39..194 170 26.6 Plus
CG5906-PA 196 CG5906-PA 42..185 39..181 164 27.6 Plus
CG32263-PA 206 CG32263-PA 58..198 40..181 155 27.5 Plus
CG32262-PA 273 CG32262-PA 92..237 39..181 147 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16042-PA 189 GI16042-PA 1..171 22..192 762 80.7 Plus
Dmoj\GI16043-PA 186 GI16043-PA 17..181 23..185 532 57 Plus
Dmoj\GI10222-PA 193 GI10222-PA 12..171 23..181 443 47.5 Plus
Dmoj\GI12229-PA 200 GI12229-PA 9..180 17..184 208 27.6 Plus
Dmoj\GI15250-PA 238 GI15250-PA 72..215 39..181 169 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14256-PA 204 GL14256-PA 1..194 1..191 900 85.6 Plus
Dper\GL14257-PA 186 GL14257-PA 17..181 23..185 541 58.8 Plus
Dper\GL22208-PA 193 GL22208-PA 12..174 23..184 430 45.4 Plus
Dper\GL25660-PA 199 GL25660-PA 3..187 7..191 193 25.7 Plus
Dper\GL20995-PA 209 GL20995-PA 21..163 38..181 164 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13236-PA 204 GA13236-PA 1..194 1..191 899 85.1 Plus
Dpse\GA13237-PA 186 GA13237-PA 17..181 23..185 540 58.2 Plus
Dpse\GA15190-PA 193 GA15190-PA 12..174 23..184 430 45.4 Plus
Dpse\GA23640-PA 199 GA23640-PA 3..187 7..191 193 25.7 Plus
Dpse\GA16798-PA 180 GA16798-PA 21..163 38..181 163 28.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19141-PA 196 GM19141-PA 1..196 1..196 1025 98.5 Plus
Dsec\GM19142-PA 186 GM19142-PA 17..181 23..185 540 58.8 Plus
Dsec\GM10665-PA 193 GM10665-PA 12..171 23..181 432 46.9 Plus
Dsec\GM13015-PA 168 GM13015-PA 8..163 25..178 171 27.3 Plus
Dsec\GM14037-PA 205 GM14037-PA 57..204 39..185 168 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19642-PA 193 GD19642-PA 9..171 20..181 434 46 Plus
Dsim\GD12563-PA 205 GD12563-PA 16..200 23..193 182 26.2 Plus
Dsim\GD24363-PA 168 GD24363-PA 8..163 25..178 171 27.3 Plus
Dsim\GD13316-PA 207 GD13316-PA 57..206 39..185 169 29.1 Plus
Dsim\GD17122-PA 245 GD17122-PA 90..245 39..194 167 26.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15554-PA 202 GJ15554-PA 1..193 1..189 803 76.2 Plus
Dvir\GJ15555-PA 186 GJ15555-PA 17..181 23..185 525 57 Plus
Dvir\GJ11024-PA 193 GJ11024-PA 12..171 23..181 438 46.2 Plus
Dvir\GJ11459-PA 197 GJ11459-PA 3..194 7..196 194 24.2 Plus
Dvir\GJ16017-PA 168 GJ16017-PA 8..162 27..178 181 27.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10054-PA 206 GK10054-PA 1..188 1..184 826 79.3 Plus
Dwil\GK10055-PA 181 GK10055-PA 12..176 23..185 536 58.2 Plus
Dwil\GK14294-PA 137 GK14294-PA 12..131 23..141 313 45 Plus
Dwil\GK18850-PA 168 GK18850-PA 3..168 22..184 178 24.7 Plus
Dwil\GK20364-PA 309 GK20364-PA 74..242 16..181 162 28.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16688-PA 196 GE16688-PA 1..196 1..196 988 93.9 Plus
Dyak\GE16689-PA 186 GE16689-PA 17..181 23..185 532 57.6 Plus
Dyak\GE11128-PA 193 GE11128-PA 12..171 23..181 422 46.2 Plus
Dyak\GE25314-PA 193 GE25314-PA 12..171 23..181 416 45.6 Plus
Dyak\GE19851-PA 204 GE19851-PA 15..177 23..181 179 27.9 Plus

RH63812.hyp Sequence

Translation from 189 to 779

> RH63812.hyp
MVPAAVKLLQASLGQWRRGSKLHPMAKGALTYAVMWPAGSLIQQAMEGRK
LREYDWARALRFSLFGALYVAPTLYGWVRLTSAMWPQTNLRTGIVKAITE
QLSYGPFACVSFFMGMSLLELKTFSQAVEETKEKAAPTYKVGVCIWPILQ
TINFSLVPEHNRVVFVSICSLMWTIFLAYMKTHHEEQSNSAVLPCT*

RH63812.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14777-PF 196 CG14777-PF 1..196 1..196 1030 100 Plus
CG14777-PC 196 CG14777-PC 1..196 1..196 1030 100 Plus
CG14777-PE 196 CG14777-PE 1..196 1..196 1030 100 Plus
CG14777-PD 196 CG14777-PD 1..196 1..196 1030 100 Plus
CG14777-PB 196 CG14777-PB 1..196 1..196 1030 100 Plus