Clone RH64567 Report

Search the DGRC for RH64567

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:645
Well:67
Vector:pFlc-1
Associated Gene/TranscriptCG9090-RA
Protein status:RH64567.pep: gold
Preliminary Size:1371
Sequenced Size:1397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9090 2002-01-01 Sim4 clustering to Release 2
CG9090 2002-06-11 Blastp of sequenced clone
CG9090 2003-01-01 Sim4 clustering to Release 3
CG9090 2008-04-29 Release 5.5 accounting
CG9090 2008-08-15 Release 5.9 accounting
CG9090 2008-12-18 5.12 accounting

Clone Sequence Records

RH64567.complete Sequence

1397 bp (1397 high quality bases) assembled on 2002-06-11

GenBank Submission: AY121712

> RH64567.complete
CTGGCATTTGGTTTTCTGGTCTGGCGCACGACGAACGTTGCTTTGGGTCC
CCACATTTCAGCCCAACAACGACTCTATACTTCAACTATATCTAATCCCT
ATCTGCACTTCACCTCCTTCGATACCCCGCACTTTGAAGCACTTCTCTAA
GGCATCATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACTCAACGTTCAA
GTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCCACTTCCGCCC
CCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGTTGCTCCACGC
CAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTGCCGAGGGTGA
CTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGCGGCCTGGGCG
GCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCCCCTGGATTTG
GTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGAGCGTGTTCAC
CGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGATTGGCCAAGG
GATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCTGTGCAAGTTC
GGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTATCGGCGAGGA
GAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCATCGGCATCCG
CTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGCGGCCAAGGTC
AAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCGAGGCTCTGCC
CAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAGGGCCTGGTGC
CATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTTCGCCTGCTTC
GAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCAAGCCACGTGC
CGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCCGCCGGTTACA
TTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGACACAGTGGTG
TCCAAGCTGAACCAGGCCAAGGGTGCCTCCGCCCTGGACGTGGCCAAGCA
GCTGGGTTGGTCTGGATTGTGGGGCGGTTTGGTGCCCAGGATCGTGATGA
TCGGCACATTGACCGCCGCCCAGTGGTTCATCTACGATGCCGTCAAGGTG
TTCCTGCGCATGCCACGCCCACCACCACCAGAAATGCCCGAGTCCCTGAA
GAAGAAGCTGGGCGTGACTGGCGAGCAGTAAACCAAATATAAGCTAACTG
TTTTTAAATTTAGAGCGAGCAGAATGTTAATCGAATTAAACTTGATTTGT
ATAGATAAACCACACAGTAAATAAAAACCACACAAAAAAAAAAAAAA

RH64567.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RA 1538 CG9090-RA 117..1501 4..1388 6925 100 Plus
Mpcp-RB 1811 Mpcp-RB 801..1092 815..1106 815 85.2 Plus
Mpcp.a 1820 Mpcp.a 815..1106 815..1106 815 85.2 Plus
Mpcp-RB 1811 Mpcp-RB 504..793 518..807 550 79.3 Plus
Mpcp.a 1820 Mpcp.a 518..807 518..807 550 79.3 Plus
Mpcp-RB 1811 Mpcp-RB 341..476 355..490 245 78.6 Plus
Mpcp.a 1820 Mpcp.a 355..490 355..490 245 78.6 Plus
Mpcp-RB 1811 Mpcp-RB 1133..1224 1147..1238 205 81.5 Plus
Mpcp.a 1820 Mpcp.a 1147..1238 1147..1238 205 81.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16166434..16167200 1115..349 3835 100 Minus
chr2R 21145070 chr2R 16166100..16166369 1383..1114 1350 100 Minus
chr2R 21145070 chr2R 16167269..16167479 349..139 1055 100 Minus
chr3L 24539361 chr3L 14528834..14529180 583..929 745 81 Plus
chr2R 21145070 chr2R 16168021..16168156 139..4 650 98.5 Minus
chr3L 24539361 chr3L 14529661..14529972 927..1238 585 79.2 Plus
chr3L 24539361 chr3L 14528299..14528523 355..579 300 75.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279400..20280166 1115..349 3835 100 Minus
2R 25286936 2R 20279061..20279335 1388..1114 1375 100 Minus
2R 25286936 2R 20280235..20280445 349..139 1055 100 Minus
3L 28110227 3L 14538726..14539072 583..929 760 81.3 Plus
2R 25286936 2R 20280987..20281122 139..4 680 100 Minus
3L 28110227 3L 14539553..14539864 927..1238 570 78.8 Plus
3L 28110227 3L 14538191..14538415 355..579 300 75.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20280599..20281365 1115..349 3835 100 Minus
2R 25260384 2R 20280260..20280534 1388..1114 1375 100 Minus
2R 25260384 2R 20281434..20281644 349..139 1055 100 Minus
2R 25260384 2R 20282186..20282321 139..4 680 100 Minus
3L 28103327 3L 14532653..14532832 927..1106 450 83.3 Plus
3L 28103327 3L 14531826..14532050 583..807 450 80 Plus
3L 28103327 3L 14532058..14532172 815..929 380 88.6 Plus
3L 28103327 3L 14531291..14531426 355..490 245 78.6 Plus
3L 28103327 3L 14532873..14532964 1147..1238 205 81.5 Plus
Blast to na_te.dros performed 2019-03-15 22:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 300..323 232..255 111 95.8 Plus

RH64567.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:25 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16166100..16166368 1115..1383 100 <- Minus
chr2R 16166435..16167199 350..1114 100 <- Minus
chr2R 16167269..16167479 139..349 100 <- Minus
chr2R 16168022..16168158 1..138 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:14 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 157..1281 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:46 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 157..1281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:31 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 157..1281 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:20 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 157..1281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:56 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1125 157..1281 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:52:21 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1382 1..1383 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:46 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1382 1..1383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:31 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 4..1385 1..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:20 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 1..1382 1..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:56 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 4..1385 1..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:25 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20279066..20279334 1115..1383 100 <- Minus
2R 20280988..20281124 1..138 99   Minus
2R 20279401..20280165 350..1114 100 <- Minus
2R 20280235..20280445 139..349 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:25 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20279066..20279334 1115..1383 100 <- Minus
2R 20280988..20281124 1..138 99   Minus
2R 20279401..20280165 350..1114 100 <- Minus
2R 20280235..20280445 139..349 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:25 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20279066..20279334 1115..1383 100 <- Minus
2R 20280988..20281124 1..138 99   Minus
2R 20279401..20280165 350..1114 100 <- Minus
2R 20280235..20280445 139..349 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:31 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16166571..16166839 1115..1383 100 <- Minus
arm_2R 16166906..16167670 350..1114 100 <- Minus
arm_2R 16167740..16167950 139..349 100 <- Minus
arm_2R 16168493..16168629 1..138 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:26 Download gff for RH64567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20280265..20280533 1115..1383 100 <- Minus
2R 20280600..20281364 350..1114 100 <- Minus
2R 20281434..20281644 139..349 100 <- Minus
2R 20282187..20282323 1..138 99   Minus

RH64567.pep Sequence

Translation from 156 to 1280

> RH64567.pep
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQ*

RH64567.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12674-PA 374 GF12674-PA 1..374 1..374 1648 93 Plus
Dana\GF24606-PA 362 GF24606-PA 1..358 1..367 1274 71.4 Plus
Dana\GF20835-PA 497 GF20835-PA 199..490 70..347 195 26 Plus
Dana\GF16639-PA 311 GF16639-PA 28..301 80..345 182 26.2 Plus
Dana\GF24720-PA 300 GF24720-PA 15..270 75..333 167 22.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20871-PA 374 GG20871-PA 1..374 1..374 1952 97.9 Plus
Dere\GG15684-PA 356 GG15684-PA 1..354 1..367 1283 71.1 Plus
Dere\GG17216-PA 317 GG17216-PA 33..307 79..345 205 27.2 Plus
Dere\GG18911-PA 455 GG18911-PA 185..448 95..347 205 26.9 Plus
Dere\GG14166-PA 301 GG14166-PA 20..271 79..333 169 23.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21821-PA 370 GH21821-PA 1..370 1..374 1614 87.8 Plus
Dgri\GH14749-PA 367 GH14749-PA 1..364 1..367 1313 71.4 Plus
Dgri\GH12025-PA 446 GH12025-PA 176..439 95..347 206 28.4 Plus
Dgri\GH15324-PA 314 GH15324-PA 29..303 79..345 179 25.1 Plus
Dgri\GH15856-PA 287 GH15856-PA 108..284 80..262 160 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mpcp1-PC 374 CG9090-PC 1..374 1..374 1947 100 Plus
Mpcp1-PB 374 CG9090-PB 1..374 1..374 1947 100 Plus
Mpcp1-PA 374 CG9090-PA 1..374 1..374 1947 100 Plus
Mpcp2-PC 356 CG4994-PC 1..354 1..367 1379 71.1 Plus
Mpcp2-PB 356 CG4994-PB 1..354 1..367 1379 71.1 Plus
Mpcp2-PA 356 CG4994-PA 1..354 1..367 1379 71.1 Plus
CG1628-PC 305 CG1628-PC 35..298 95..347 217 27.7 Plus
CG1628-PB 459 CG1628-PB 189..452 95..347 217 27.7 Plus
sea-PE 317 CG6782-PE 33..307 79..345 197 26.5 Plus
sea-PD 317 CG6782-PD 33..307 79..345 197 26.5 Plus
sea-PC 317 CG6782-PC 33..307 79..345 197 26.5 Plus
sea-PA 317 CG6782-PA 33..307 79..345 197 26.5 Plus
aralar1-PE 707 CG2139-PE 307..611 32..329 167 22.9 Plus
CG4743-PA 297 CG4743-PA 29..284 73..344 165 26.1 Plus
aralar1-PB 679 CG2139-PB 289..583 42..329 161 23 Plus
aralar1-PD 682 CG2139-PD 292..586 42..329 161 23 Plus
aralar1-PA 682 CG2139-PA 292..586 42..329 161 23 Plus
aralar1-PF 694 CG2139-PF 292..586 42..329 161 23 Plus
aralar1-PC 695 CG2139-PC 305..599 42..329 161 23 Plus
CG7514-PA 301 CG7514-PA 20..274 79..336 158 23 Plus
CG1907-PA 317 CG1907-PA 1..298 56..344 156 21.7 Plus
mfrn-PA 379 CG4963-PA 21..282 82..350 154 23.5 Plus
CG18418-PA 311 CG18418-PA 18..283 75..336 152 21.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20792-PA 372 GI20792-PA 1..372 1..374 1597 88.3 Plus
Dmoj\GI11490-PA 364 GI11490-PA 1..360 1..367 1303 70.6 Plus
Dmoj\GI14298-PA 447 GI14298-PA 149..438 70..347 186 28.4 Plus
Dmoj\GI17472-PA 310 GI17472-PA 22..308 75..355 163 26.6 Plus
Dmoj\GI16974-PA 359 GI16974-PA 88..341 96..346 151 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17629-PA 378 GL17629-PA 1..378 1..374 1681 88.9 Plus
Dper\GL21016-PA 359 GL21016-PA 1..356 1..368 1224 69.3 Plus
Dper\GL14877-PA 464 GL14877-PA 178..457 75..347 202 26.8 Plus
Dper\GL23888-PA 301 GL23888-PA 17..292 79..346 172 26.7 Plus
Dper\GL14047-PA 689 GL14047-PA 305..576 42..322 167 23.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21534-PA 378 GA21534-PA 1..378 1..374 1681 88.9 Plus
Dpse\GA18578-PA 359 GA18578-PA 1..356 1..368 1292 71.7 Plus
Dpse\GA14056-PA 464 GA14056-PA 178..457 75..347 198 26.5 Plus
Dpse\GA27089-PA 303 GA27089-PA 19..294 79..346 171 26.6 Plus
Dpse\GA15263-PA 689 GA15263-PA 305..576 42..322 166 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19795-PA 374 GM19795-PA 1..374 1..374 1976 99.2 Plus
Dsec\GM25468-PA 356 GM25468-PA 1..354 1..367 1286 71.4 Plus
Dsec\GM16860-PA 82 GM16860-PA 5..82 297..374 407 98.7 Plus
Dsec\GM26094-PA 317 GM26094-PA 33..307 79..345 205 27.2 Plus
Dsec\GM13956-PA 301 GM13956-PA 20..271 79..333 165 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25287-PA 362 GD25287-PA 1..362 1..374 1878 95.5 Plus
Dsim\GD14491-PA 356 GD14491-PA 1..354 1..367 1286 71.4 Plus
Dsim\GD20656-PA 317 GD20656-PA 33..307 79..345 204 27.2 Plus
Dsim\GD16025-PA 376 GD16025-PA 110..369 95..347 197 28.1 Plus
Dsim\GD13239-PA 301 GD13239-PA 20..271 79..333 164 23.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20527-PA 368 GJ20527-PA 1..368 1..374 1639 89.6 Plus
Dvir\GJ13684-PA 362 GJ13684-PA 1..358 1..367 1330 71.7 Plus
Dvir\GJ19354-PA 454 GJ19354-PA 184..447 95..347 195 28.4 Plus
Dvir\GJ10052-PA 319 GJ10052-PA 54..308 95..345 178 27.1 Plus
Dvir\GJ17214-PA 328 GJ17214-PA 13..322 59..349 168 21.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19533-PA 376 GK19533-PA 1..375 1..374 1705 92.5 Plus
Dwil\GK20478-PA 363 GK20478-PA 1..362 1..374 1267 71.1 Plus
Dwil\GK19764-PA 443 GK19764-PA 173..436 95..347 200 27.8 Plus
Dwil\GK13128-PA 679 GK13128-PA 292..563 42..322 166 23.7 Plus
Dwil\GK11904-PA 326 GK11904-PA 29..309 75..347 159 23.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13810-PA 374 GE13810-PA 1..374 1..374 1954 98.1 Plus
Dyak\GE22015-PA 357 GE22015-PA 1..355 1..367 1294 72 Plus
Dyak\GE15385-PA 470 GE15385-PA 200..463 95..347 202 26.9 Plus
Dyak\GE10110-PA 317 GE10110-PA 33..307 79..345 182 27.5 Plus
Dyak\GE10109-PA 317 GE10109-PA 53..307 95..345 167 24.7 Plus

RH64567.hyp Sequence

Translation from 156 to 1280

> RH64567.hyp
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQ*

RH64567.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PC 374 CG9090-PC 1..374 1..374 1947 100 Plus
CG9090-PB 374 CG9090-PB 1..374 1..374 1947 100 Plus
CG9090-PA 374 CG9090-PA 1..374 1..374 1947 100 Plus
Mpcp-PC 356 CG4994-PC 1..354 1..367 1379 71.1 Plus
Mpcp-PB 356 CG4994-PB 1..354 1..367 1379 71.1 Plus