BDGP Sequence Production Resources |
Search the DGRC for RH64960
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 649 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12818-RA |
Protein status: | RH64960.pep: gold |
Sequenced Size: | 1019 |
Gene | Date | Evidence |
---|---|---|
CG12818 | 2008-04-29 | Release 5.5 accounting |
CG12818 | 2008-04-29 | Picked prior to 5.5 |
CG12818 | 2008-08-15 | Release 5.9 accounting |
CG12818 | 2008-12-18 | 5.12 accounting |
1019 bp assembled on 2007-09-25
GenBank Submission: BT031026
> RH64960.complete GAATCGATTACAGGAATGTCAACAAAGTGGAAATAAAATGAATATTTTAC CAAAAAAACGCTGGCATGTGCGTACCAAGGAGAACATTGCCCGCGTGCGC CGGGATCAAGCGGCTGCCGCAGCAGAAGAAAAAGTCCGGCAGGAGAAATT GGAATTTGCTGAAAGCGAGGCACGAATCAACTTCCTGCGCCGCCAATCGG GCTTGCCGGAGAAGGCCTCCAAGGAATCTCGAGAGGAGTCGCAATGCAGT ACTGAAACAACCAAAGGGGTGGATCTCTTTGCCGACTACAAGGCGAGAGT GAAGACCACTAACAAAGACTTGGAAAAGGAGCAAAAGGAGGAGCAGGAGA AGTATGAGAAGCAGATCGGCTACCTCACCTACTTGGGCCAGGACACCAAT GAAGCTTTGAAAGTGCGCAGCTGGTACGAGTTAGCCCCCAAAAGACCAGA AGTTGGGGATCCCACAGCTACTGAAACTCATCATAAGCAAAAGCTAGCCC ACGATCCTCTGACCCTAATTAATGCTTTGTTGCCGCCAGAAAAAAAGGAT CCCAAAAAGGCCACAAAAAGAATTCGCGAAAGGACACCCGCGCCTTCTCA GGAACCTTCAATACCCCACAAGGACAAGAAATCCAAGAAAGATAAGAAGA AGCACAAGAGCAAAAATGGTTCAAGGGAGACCCTTTTGGCCGAGGAACGC ATAAAACGAGAAAAGCTCGAGACGCTAAGAAGGGAGCGCATGCGACGGGA AACAGCGGAACGCCAGCGTTCCGAGGCTCTGTTCGCACCCAAGGAGCTGC CGGTGGCTGCCAGTGCCGAATCCACGCCGGCTTCGACGCCTAAGGTTGTC CAAAAGTACAACAGTCAGTTTAATCCGGAGTTAGCAAAGCAAAATATGCT CTAGCCATTAATTATGTTTTCAACTTAATGTTAACAGCCTGATTATGAAT ATAATCACTAAGCAAATAAATAGAAATTACACTTTATTATTGAATTGTTT AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12818-RA | 1144 | CG12818-RA | 107..1112 | 2..1007 | 5015 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6157603..6158440 | 161..998 | 4175 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 6157444..6157545 | 60..161 | 510 | 100 | Plus |
chr3R | 27901430 | chr3R | 6157330..6157388 | 2..60 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10331856..10332702 | 161..1007 | 4220 | 99.9 | Plus |
3R | 32079331 | 3R | 10331697..10331798 | 60..161 | 510 | 100 | Plus |
3R | 32079331 | 3R | 10331583..10331641 | 2..60 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10072687..10073533 | 161..1007 | 4220 | 99.8 | Plus |
3R | 31820162 | 3R | 10072528..10072629 | 60..161 | 510 | 100 | Plus |
3R | 31820162 | 3R | 10072414..10072472 | 2..60 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2305..2413 | 998..881 | 119 | 61.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6157328..6157388 | 1..60 | 98 | -> | Plus |
chr3R | 6157445..6157544 | 61..160 | 100 | -> | Plus |
chr3R | 6157603..6158442 | 161..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..867 | 38..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..867 | 38..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..867 | 38..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..867 | 38..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..867 | 38..904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..1001 | 1..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..1001 | 1..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..1001 | 1..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..1001 | 1..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12818-RA | 1..1001 | 1..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10331581..10331641 | 1..60 | 98 | -> | Plus |
3R | 10331698..10331797 | 61..160 | 100 | -> | Plus |
3R | 10331856..10332695 | 161..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10331581..10331641 | 1..60 | 98 | -> | Plus |
3R | 10331698..10331797 | 61..160 | 100 | -> | Plus |
3R | 10331856..10332695 | 161..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10331581..10331641 | 1..60 | 98 | -> | Plus |
3R | 10331698..10331797 | 61..160 | 100 | -> | Plus |
3R | 10331856..10332695 | 161..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6157303..6157363 | 1..60 | 98 | -> | Plus |
arm_3R | 6157420..6157519 | 61..160 | 100 | -> | Plus |
arm_3R | 6157578..6158417 | 161..1000 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10072687..10073526 | 161..1000 | 99 | Plus | |
3R | 10072412..10072472 | 1..60 | 98 | -> | Plus |
3R | 10072529..10072628 | 61..160 | 100 | -> | Plus |
Translation from 0 to 903
> RH64960.hyp NRLQECQQSGNKMNILPKKRWHVRTKENIARVRRDQAAAAAEEKVRQEKL EFAESEARINFLRRQSGLPEKASKESREESQCSTETTKGVDLFADYKARV KTTNKDLEKEQKEEQEKYEKQIGYLTYLGQDTNEALKVRSWYELAPKRPE VGDPTATETHHKQKLAHDPLTLINALLPPEKKDPKKATKRIRERTPAPSQ EPSIPHKDKKSKKDKKKHKSKNGSRETLLAEERIKREKLETLRRERMRRE TAERQRSEALFAPKELPVAASAESTPASTPKVVQKYNSQFNPELAKQNML *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12818-PA | 288 | CG12818-PA | 1..288 | 13..300 | 1468 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1351..1596 | 7..258 | 152 | 21.6 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1351..1596 | 7..258 | 152 | 21.6 | Plus |
Translation from 37 to 903
> RH64960.pep MNILPKKRWHVRTKENIARVRRDQAAAAAEEKVRQEKLEFAESEARINFL RRQSGLPEKASKESREESQCSTETTKGVDLFADYKARVKTTNKDLEKEQK EEQEKYEKQIGYLTYLGQDTNEALKVRSWYELAPKRPEVGDPTATETHHK QKLAHDPLTLINALLPPEKKDPKKATKRIRERTPAPSQEPSIPHKDKKSK KDKKKHKSKNGSRETLLAEERIKREKLETLRRERMRRETAERQRSEALFA PKELPVAASAESTPASTPKVVQKYNSQFNPELAKQNML*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17525-PA | 302 | GF17525-PA | 1..302 | 1..288 | 760 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17515-PA | 290 | GG17515-PA | 1..290 | 1..288 | 1027 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19125-PA | 309 | GH19125-PA | 1..309 | 1..288 | 797 | 61.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12818-PA | 288 | CG12818-PA | 1..288 | 1..288 | 1468 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23582-PA | 310 | GI23582-PA | 1..310 | 1..288 | 646 | 56.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23690-PA | 313 | GL23690-PA | 1..313 | 1..288 | 807 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11830-PB | 289 | GA11830-PB | 1..289 | 1..288 | 821 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23875-PA | 293 | GM23875-PA | 1..293 | 1..288 | 1172 | 91.1 | Plus |
Dsec\GM19585-PA | 226 | GM19585-PA | 1..194 | 1..194 | 893 | 95.4 | Plus |
Dsec\GM19586-PA | 54 | GM19586-PA | 1..54 | 235..288 | 197 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18685-PA | 293 | GD18685-PA | 1..293 | 1..288 | 1420 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23556-PA | 307 | GJ23556-PA | 1..307 | 1..288 | 691 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12831-PA | 299 | GK12831-PA | 1..299 | 1..288 | 677 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26027-PA | 289 | GE26027-PA | 1..289 | 1..287 | 967 | 84.4 | Plus |