BDGP Sequence Production Resources |
Search the DGRC for RH65663
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 656 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12259-RA |
Protein status: | RH65663.pep: gold |
Preliminary Size: | 1080 |
Sequenced Size: | 1244 |
Gene | Date | Evidence |
---|---|---|
CG12259 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12259 | 2002-04-26 | Blastp of sequenced clone |
CG12259 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12259 | 2008-04-29 | Release 5.5 accounting |
CG12259 | 2008-08-15 | Release 5.9 accounting |
CG12259 | 2008-12-18 | 5.12 accounting |
1244 bp (1244 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113617
> RH65663.complete GACACCAATTGGATGTTTACAAATTTCGTTTACGAATTAAATAAAAAAAA ATATAAATAAATACAGAAACAACTAAGGATGGCCCACTACAAAGGTGCCG CCAGCGAGGCGGGCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAG CAGCAGGAGATCGAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCT GGACAAGATTGAGAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGC AGCTCAAGTCCTCGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCC AAGCAGGAGGATATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAA GGACGAAAAGGATCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGG AGAAGAACAAGCAGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGAC GACGACGAGGAGGAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACA GCTGAAGATTAAGCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCA AGGAAGACATTTTGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGAC GTGGACACTTCCTTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAG ACTGCGCGAGCAGCTGCGTCAAGAATGGGTAATGCAGCAGGCGGAGCTGA AGGACGAGGACATCTCCATCACGTTCAGCTACTGGGATGGCTCCGGCCAT CGGCGGAACGTGCTGATGAAGAAGGGCAACTCCATCTACCAGTTTCTGCA GAAGTGCCTGGAGCTGCTGCGCAAGGAGTTCATCGAACTGAAGACCGTAA TGGCCGACCAGCTGATGTACGTCAAGGAGGATCTGATCCTGCCGCACCAC TATTCCTTCTACGACTTTATCGTGACCAAGGCACGCGGCAAATCCGGCCC GCTCTTCCAGTTCGACGTCCACGACGATGTGCGCATGATAAGCGACGCCT CCGTGGAGAAGGAGGAGTCCCATGCCGGAAAGGTACTCCTCCGCTCCTGG TACGAGCGCAACAAGCACATCTTCCCAGCCAGCCGATGGGAGCCCTACGA TCCCACCAAGTCCTACGACAAGTACACCATCAAGGACAAGGATAAGAGTA AAAAGTAGTGCTTAGGGCAGTTTCTGCCCGAATAATTGTACAATATAATA ATGATTGATTTAATACATCAAAACAAACGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12259-RA | 1242 | CG12259-RA | 1..1233 | 2..1234 | 6165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23742805..23744032 | 1229..2 | 6095 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27919839..27921071 | 1234..2 | 6165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 27660670..27661902 | 1234..2 | 6165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord2 | 7650 | accord2 QBERT 7650bp | 7017..7076 | 76..17 | 138 | 70 | Minus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 5468..5530 | 675..735 | 130 | 69.8 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 1030..1081 | 35..86 | 125 | 71.2 | Plus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5044..5077 | 35..68 | 116 | 82.4 | Plus |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 4138..4174 | 29..65 | 113 | 78.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23742805..23744032 | 1..1229 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1080 | 79..1158 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1080 | 79..1158 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1080 | 79..1158 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1080 | 79..1158 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1080 | 79..1158 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1228 | 2..1229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1228 | 2..1229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 18..1246 | 1..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 1..1228 | 2..1229 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12259-RA | 18..1246 | 1..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27919844..27921071 | 1..1229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27919844..27921071 | 1..1229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27919844..27921071 | 1..1229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23745566..23746793 | 1..1229 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27660675..27661902 | 1..1229 | 99 | Minus |
Translation from 78 to 1157
> RH65663.pep MAHYKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLDKIENKFAT HYDAVEQQLKSSTIGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQR ALEAIQAEKNKQKRQIQALSFNLDDDEEEEEEDDEDHDKKQLKIKQEDQP KPKWTEIKEDILPIKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEW VMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKE FIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDD VRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKSYDKYT IKDKDKSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18003-PA | 354 | GF18003-PA | 1..354 | 1..359 | 1699 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12085-PA | 357 | GG12085-PA | 1..356 | 1..358 | 1718 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21791-PA | 361 | GH21791-PA | 1..346 | 1..346 | 1627 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12259-PA | 359 | CG12259-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21926-PA | 357 | GI21926-PA | 1..347 | 1..351 | 1626 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24294-PA | 358 | GL24294-PA | 1..358 | 1..359 | 1611 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11514-PA | 358 | GA11514-PA | 1..358 | 1..359 | 1612 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16314-PA | 359 | GM16314-PA | 1..359 | 1..359 | 1844 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18051-PA | 359 | GD18051-PA | 1..359 | 1..359 | 1848 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14286-PA | 357 | GJ14286-PA | 1..342 | 1..346 | 1614 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11956-PA | 359 | GK11956-PA | 1..359 | 1..359 | 1659 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10531-PA | 357 | GE10531-PA | 1..357 | 1..359 | 1808 | 96.7 | Plus |
Translation from 78 to 1157
> RH65663.hyp MAHYKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLDKIENKFAT HYDAVEQQLKSSTIGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQR ALEAIQAEKNKQKRQIQALSFNLDDDEEEEEEDDEDHDKKQLKIKQEDQP KPKWTEIKEDILPIKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEW VMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKE FIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDD VRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKSYDKYT IKDKDKSKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12259-PA | 359 | CG12259-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1399..1574 | 13..199 | 158 | 25.7 | Plus |