Clone RH65876 Report

Search the DGRC for RH65876

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:658
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG15118-RD
Protein status:RH65876.pep: gold
Preliminary Size:2166
Sequenced Size:2361

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15118 2002-10-18 Blastp of sequenced clone
CG15118 2008-04-29 Release 5.5 accounting
CG15118 2008-08-15 Release 5.9 accounting
CG15118 2008-12-18 5.12 accounting

Clone Sequence Records

RH65876.complete Sequence

2361 bp (2361 high quality bases) assembled on 2002-10-18

GenBank Submission: BT001859

> RH65876.complete
GACTGCGATAAAACTTACTGATTCCGTCACCTTGCAGAACGATAAGGAGA
AAATCGATCCCCGCGGCCGGACGCCACTGATGCTGGCTGTGAGATTGGCC
AATTTGCCATGCGTTAAATGCCTTCTGGCGGCCAAATGCAATGCGACCTA
TGAGTACGAAGGCTGGTCGATTGTCCAGGAAGCGGTCTGCACCGGCGATG
TGGACATACTGACGGCCATCATCGAAGTCCGGGATCTCCAGCGTCATGTC
CAGCGGGTTACGCATGTGCCTAAGCTGCTGCAGCACCTATTGGACGCACC
AGATTTCTACATCGAGATGAAGTGGGAATTCACCTCCTGGGTGCCTCTGA
TGTCGCGTCTCTGTCCCAGCGACACCTACAAGGTCTACAAGCGGGGAGCC
AACGTCCGGATAGATACCACCCTGCTGGGCTTCGACAACAACACCTGGCA
ACGGGGCAATCGCTCTTACATCTTCAAGGGGGCCAAAGAAACTGCCACGA
TGATCGAGATCGATCACGATACAAACGAAGTAATGGTGGAGGAGATGAGC
AGCGATATCGGTGATATTGTGGCCATTCCACCAGCCTTGGGCACCGTGAG
GGCGCGCCTCAATGCCCCGGTGATCACGAACAACATCGAGATGGACAAGA
TTAGCTTCGAGCGCAACAAGTGCGGCATATGGGGATGGCGTAGCGAGAAA
TCTGAGATGATCAACGGCTACAACTGCAAGGTGTATGGGGCCAGCAACGT
GGAGTTTGTTACAAAGACGCGAATGGATCACCTTAGCGAGGAGCAAATTA
AGAACAAGACAGCGAGGACTCCACTGCATAGCCTGCTGGGAATTGCTGAT
GAGGATTATGTGTCACCCGCTGATGCTGCTGCGGCACTAAAAGATCGTAC
ACCATCGCCCCGGTTGGAGGAAGCTTCCAACGCTGGAGTTGAAAATGGTG
GCCGAAACTCACCAGCCCCTGGAAATCAAAGCAACGGAAGCTCCGCGGGT
GCGTCGGGCACCAGTACTCCAAAGTCTTCTGTTACTCCGGAGGAGTATTT
TACTCAGGAGTTTGATCTTCACGGAAGGGATGTTGGCGGTCCCAAGAACC
TGAGCACAAAGGTGCAGCGCTTTAGAGCCAACTTATGGTTAGCCGAGGAG
CATCCCATTCGACTGCAGGAACAGGTGCTTCCCATTCTGGATCTCATGTC
CACCATGGCCAGTCCACATGTGTCCAAGCTGAGAGACTTTATCACCATGC
AGCTGCCTGCTGGTTTTCCAGTCAAAGTGGAAATCCCGCTCTTCCATGTT
TTAAATGCCTGTATTACATTTGGAAACGTATTTGCTTTAACCACGCCCGT
TGATCACGTGGCCACGCTGCAGGAGCAAGATCGTGTCACTTGTTTGGTCG
ATGATCGCTGCTTCGATATCCCAGCTCACTACACAAACAGGGGCAGCGAT
GTCCGTCGGCAAATTCCTCTTGACGAGGATGACATGCTACAGTATGCAAT
TGAGCAGAGTTTGGTGGAAACAAGCGGAGCCTGTGGCGTGGACGCTCGGG
ACGACGACAAGGTGGATATCTGGGAAGTGTTGAGAGGCCAAAACGTCGTG
GGCTCCGATCTCCTGCCAGAAGATGACGAGCAGCTGCAACGAGTCCTGCA
GGAATCGCTGCTTGGCGCCCATGCAAATCTCCAAAGCGGTTCGCCCGCCT
CCGACGAAGACGACGATGGTGGCTTCCGGTATGTGGATCCCGATTTGGCC
ATGGCCATGCGACTGTCACAGCAAGAGCAGAGAAAGTTCGAACTGGAGCG
GCAGCAGGAGCAGGAGATGATCGAGCAGGCGTTAAAGCTTAGCCTGCAAG
AGCACTAATATACTATCAGCAATTCCAAATTGAAGTTATATTGATTTCAA
GTGTAACCTTCGGGCTAAGTTGTATAAATACTACGAGTACTTTAAGTTAC
CCTCGCATCCTTCTGCGCCCTGTCCTTGTTTTGTATTGTGATACAAGCGG
GACGCAAGCGGGAAGCAGTCGCCTGGTCTCAACTCGTCCACTCGCAACCG
AAGGATCCACCCTATATATACCATGTATCCAAAGTAGTCCTTGTAGTTGT
AGCTTTTGCATTGAATCCGGTATCTATTATCTAGATACTATCTTAAATTT
AAGTGCGTGTGGCGACCGTGAGATATGTCTTATATGCGATCGAACCGGGT
TAGCCACATGCTTGCGTGTCCTTAATCTGTAACCACTAATCACCATTATG
CGTAATTTATACCAATAATACCCACTCACACATCATGCGCATGTAAGCCG
ACACCTTTTTGTGTAAATGAAGAAAATATATGAAATAATCATCAGAAAAA
AAAAAAAAAAA

RH65876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-RD 2491 CG15118-RD 44..2392 2..2350 11730 99.9 Plus
CG15118-RC 2652 CG15118-RC 331..2646 35..2350 11565 99.9 Plus
CG15118-RA 2508 CG15118-RA 187..2502 35..2350 11565 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15022013..15022755 1641..899 3715 100 Minus
chr2R 21145070 chr2R 15020858..15021562 2345..1641 3495 99.7 Minus
chr2R 21145070 chr2R 15023068..15023384 802..486 1585 100 Minus
chr2R 21145070 chr2R 15023452..15023766 485..171 1575 100 Minus
chr2R 21145070 chr2R 15023824..15023992 170..2 830 99.4 Minus
chr2R 21145070 chr2R 15022815..15022916 898..797 495 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19134883..19135625 1641..899 3715 100 Minus
2R 25286936 2R 19133723..19134432 2350..1641 3535 99.9 Minus
2R 25286936 2R 19135939..19136255 802..486 1585 100 Minus
2R 25286936 2R 19136323..19136637 485..171 1575 100 Minus
2R 25286936 2R 19136695..19136863 170..2 845 100 Minus
2R 25286936 2R 19135685..19135786 898..797 495 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19136082..19136824 1641..899 3715 100 Minus
2R 25260384 2R 19134922..19135631 2350..1641 3535 99.8 Minus
2R 25260384 2R 19137138..19137454 802..486 1585 100 Minus
2R 25260384 2R 19137522..19137836 485..171 1575 100 Minus
2R 25260384 2R 19137894..19138062 170..2 845 100 Minus
2R 25260384 2R 19136884..19136985 898..797 495 99 Minus
Blast to na_te.dros performed on 2019-03-16 14:39:20 has no hits.

RH65876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:40:09 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15023824..15023992 1..170 98   Minus
chr2R 15020858..15021561 1642..2345 99 <- Minus
chr2R 15022013..15022755 899..1641 100 <- Minus
chr2R 15022815..15022910 803..898 100 <- Minus
chr2R 15023068..15023384 486..802 100 <- Minus
chr2R 15023452..15023766 171..485 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:26 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 84..1914 28..1858 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:48 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 84..1914 28..1858 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:06:22 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RA 84..1914 28..1858 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:43 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 84..1914 28..1858 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:26 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RA 84..1914 28..1858 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:50 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RD 1..2344 2..2345 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:48 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RD 1..2344 2..2345 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:06:22 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RD 1..2344 2..2345 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:43 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RD 1..2344 2..2345 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:26 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RD 1..2344 2..2345 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:09 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133728..19134431 1642..2345 100 <- Minus
2R 19134883..19135625 899..1641 100 <- Minus
2R 19135685..19135780 803..898 100 <- Minus
2R 19135939..19136255 486..802 100 <- Minus
2R 19136323..19136637 171..485 100 <- Minus
2R 19136695..19136863 1..170 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:09 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133728..19134431 1642..2345 100 <- Minus
2R 19134883..19135625 899..1641 100 <- Minus
2R 19135685..19135780 803..898 100 <- Minus
2R 19135939..19136255 486..802 100 <- Minus
2R 19136323..19136637 171..485 100 <- Minus
2R 19136695..19136863 1..170 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:40:09 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133728..19134431 1642..2345 100 <- Minus
2R 19134883..19135625 899..1641 100 <- Minus
2R 19135685..19135780 803..898 100 <- Minus
2R 19135939..19136255 486..802 100 <- Minus
2R 19136323..19136637 171..485 100 <- Minus
2R 19136695..19136863 1..170 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:06:22 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15021233..15021936 1642..2345 100 <- Minus
arm_2R 15022388..15023130 899..1641 100 <- Minus
arm_2R 15023190..15023285 803..898 100 <- Minus
arm_2R 15023444..15023760 486..802 100 <- Minus
arm_2R 15023828..15024142 171..485 100 <- Minus
arm_2R 15024200..15024368 1..170 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:14 Download gff for RH65876.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19134927..19135630 1642..2345 100 <- Minus
2R 19136082..19136824 899..1641 100 <- Minus
2R 19136884..19136979 803..898 100 <- Minus
2R 19137138..19137454 486..802 100 <- Minus
2R 19137522..19137836 171..485 100 <- Minus
2R 19137894..19138062 1..170 99   Minus

RH65876.hyp Sequence

Translation from 0 to 1857

> RH65876.hyp
TAIKLTDSVTLQNDKEKIDPRGRTPLMLAVRLANLPCVKCLLAAKCNATY
EYEGWSIVQEAVCTGDVDILTAIIEVRDLQRHVQRVTHVPKLLQHLLDAP
DFYIEMKWEFTSWVPLMSRLCPSDTYKVYKRGANVRIDTTLLGFDNNTWQ
RGNRSYIFKGAKETATMIEIDHDTNEVMVEEMSSDIGDIVAIPPALGTVR
ARLNAPVITNNIEMDKISFERNKCGIWGWRSEKSEMINGYNCKVYGASNV
EFVTKTRMDHLSEEQIKNKTARTPLHSLLGIADEDYVSPADAAAALKDRT
PSPRLEEASNAGVENGGRNSPAPGNQSNGSSAGASGTSTPKSSVTPEEYF
TQEFDLHGRDVGGPKNLSTKVQRFRANLWLAEEHPIRLQEQVLPILDLMS
TMASPHVSKLRDFITMQLPAGFPVKVEIPLFHVLNACITFGNVFALTTPV
DHVATLQEQDRVTCLVDDRCFDIPAHYTNRGSDVRRQIPLDEDDMLQYAI
EQSLVETSGACGVDARDDDKVDIWEVLRGQNVVGSDLLPEDDEQLQRVLQ
ESLLGAHANLQSGSPASDEDDDGGFRYVDPDLAMAMRLSQQEQRKFELER
QQEQEMIEQALKLSLQEH*

RH65876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-PB 637 CG15118-PB 31..637 12..618 3171 100 Plus
CG15118-PA 637 CG15118-PA 31..637 12..618 3171 100 Plus
CG15118-PD 592 CG15118-PD 1..592 27..618 3090 100 Plus
CG15118-PE 630 CG15118-PE 31..578 12..557 2818 98.5 Plus
CG5742-PB 543 CG5742-PB 107..539 10..486 479 27.8 Plus

RH65876.pep Sequence

Translation from 79 to 1857

> RH65876.pep
MLAVRLANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEV
RDLQRHVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTY
KVYKRGANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNE
VMVEEMSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGI
WGWRSEKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLH
SLLGIADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQ
SNGSSAGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRA
NLWLAEEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKV
EIPLFHVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAH
YTNRGSDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEV
LRGQNVVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFR
YVDPDLAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEH*

RH65876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13381-PA 642 GF13381-PA 48..642 1..592 2849 89.6 Plus
Dana\GF12280-PA 542 GF12280-PA 124..538 2..460 468 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20921-PA 637 GG20921-PA 46..637 1..592 3125 98.1 Plus
Dere\GG20989-PA 541 GG20989-PA 123..537 2..460 460 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23148-PA 649 GH23148-PA 48..649 1..592 2594 82.3 Plus
Dgri\GH20848-PA 531 GH20848-PA 126..527 2..460 454 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-PD 592 CG15118-PD 1..592 1..592 3090 100 Plus
CG15118-PB 637 CG15118-PB 46..637 1..592 3090 100 Plus
CG15118-PA 637 CG15118-PA 46..637 1..592 3090 100 Plus
CG15118-PE 630 CG15118-PE 46..578 1..531 2737 98.5 Plus
CG5742-PB 543 CG5742-PB 125..539 2..460 447 27.4 Plus
CG5742-PA 543 CG5742-PA 125..539 2..460 447 27.4 Plus
CG5742-PC 585 CG5742-PC 125..539 2..460 447 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20625-PA 640 GI20625-PA 48..640 1..592 2665 84.2 Plus
Dmoj\GI20952-PA 520 GI20952-PA 117..354 2..245 334 31.6 Plus
Dmoj\GI20952-PA 520 GI20952-PA 427..516 348..460 156 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11759-PA 581 GL11759-PA 48..581 1..592 2374 78.6 Plus
Dper\GL10514-PA 539 GL10514-PA 122..535 2..460 472 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13506-PA 636 GA13506-PA 48..636 1..592 2848 89.7 Plus
Dpse\GA19099-PA 539 GA19099-PA 122..535 2..460 484 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19848-PA 637 GM19848-PA 46..637 1..592 3155 98.8 Plus
Dsec\GM19924-PA 543 GM19924-PA 125..539 2..460 459 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25337-PA 654 GD25337-PA 63..654 1..592 3137 98.5 Plus
Dsim\GD25413-PA 543 GD25413-PA 125..539 2..460 459 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19668-PA 641 GJ19668-PA 48..641 1..592 2669 85.3 Plus
Dvir\GJ20674-PA 514 GJ20674-PA 110..510 2..460 433 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17840-PA 641 GK17840-PA 48..641 1..592 2626 82.5 Plus
Dwil\GK21343-PA 550 GK21343-PA 117..546 2..460 492 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13859-PA 701 GE13859-PA 46..578 1..531 2786 97 Plus
Dyak\GE13932-PA 544 GE13932-PA 126..540 2..460 461 27.7 Plus
Dyak\GE13859-PA 701 GE13859-PA 626..701 517..592 359 90.8 Plus