Clone RH65902 Report

Search the DGRC for RH65902

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:659
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG14618-RA
Protein status:RH65902.pep: gold
Preliminary Size:960
Sequenced Size:1194

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14618 2002-01-01 Sim4 clustering to Release 2
CG14618 2002-02-22 Blastp of sequenced clone
CG14618 2003-01-01 Sim4 clustering to Release 3
CG14618 2008-04-29 Release 5.5 accounting
CG14618 2008-08-15 Release 5.9 accounting
CG14618 2008-12-18 5.12 accounting

Clone Sequence Records

RH65902.complete Sequence

1194 bp (1194 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089688

> RH65902.complete
GCTTAGCCAATTGAACTACTTTTAAATACACGAGGGTAGCGGTAACGTAA
AACACAACAAAAAATCTAGTAACAAGATCAATGGATACGACAGAAAAGGC
TCTCAAGGAGGTGACCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCA
CAACGCCCGGCACGCCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAG
CTGGCGGAGTTTGCCGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGA
GAAGAAAAAGCAGAAGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCC
GGACGGGACCCTCCCGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGC
GGAAAGTCTGGCCTCTCGGTCGCTATAGATCTGGACTACGACGATCTGAT
GCAGGAACGGGACATCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACA
CCATTAATCGGCGCAGCCCACAGCCGGGCAATCTGCACTTCACAGGCATC
CGGCGCAACGGTCACATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGA
GAACTGGCACGTGCAGTACTACTTCGATCGCGGGCACACCGATATTTTCG
AGCATAGCCAACTGGTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGAC
AAGCTGCAGCCCGGCTGCACCTACGTCATCGGTGGCCTGGTGGACCACAA
TCACTTCAAGGGCCTGTGCCACTCGAGGGCCACGTCGGCGGGGCTGACTA
CCGCTCGCCTCCCGCTTAGCGAGCATGTAGACATGAAGACGAGGGCCGTG
CTGAGCACCTACCATGTGTTTGAGCTGCTGACCAAAGTTGCTGCCGGTCA
GGACTGGACTACGGCCATTCTGGAAACTATTCCCATGCGCAAGGGAGCCA
AGGCGAAAATCACAGACAAAAAGGAGCCGAATCATTGCTTGGAGCAGCAG
GATGAAAAACAGAAACAGGAAGCTGAGTCAGATAAGCCCACCTTAACCGC
CGTCGAGTCTGAAATCGAATCCCATTCTTTAGACAGTTGACGGCAGTCGA
CATCGGATCTCGAGGTCTTTTTGATTTTTATTTCAGTTTTTGTTTTTACA
AAATCACATTTCGTTTTGTTTCGCAATTTAAATGATAACTTATGTATTTT
AAGCGCAAATAATAATAAGAATACAAAGAAAAAAAAAAAAAAAA

RH65902.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-RA 1342 CG14618-RA 111..1290 2..1181 5900 100 Plus
CG12576-RB 2080 CG12576-RB 1890..2080 1181..991 955 100 Minus
CG12576-RA 2595 CG12576-RA 2405..2595 1181..991 955 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21869697..21870511 2..816 4075 100 Plus
chrX 22417052 chrX 21870602..21870964 816..1178 1815 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:36:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22473731..22474545 2..816 4075 100 Plus
X 23542271 X 22474636..22475001 816..1181 1830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22458823..22459637 2..816 4075 100 Plus
X 23527363 X 22459728..22460093 816..1181 1830 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:44:02 has no hits.

RH65902.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:45:06 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21869696..21870511 1..816 99 -> Plus
chrX 21870603..21870964 817..1178 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:27 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 81..1040 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:36:28 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 81..1040 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:10:51 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 81..1040 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:44 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 81..1040 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:42:25 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..960 81..1040 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:54 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 2..1178 2..1178 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:36:27 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 1..1177 2..1178 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:10:51 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 33..1210 1..1178 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:45 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 2..1178 2..1178 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:25 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
CG14618-RA 33..1210 1..1178 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:06 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
X 22473730..22474545 1..816 99 -> Plus
X 22474637..22474998 817..1178 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:06 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
X 22473730..22474545 1..816 99 -> Plus
X 22474637..22474998 817..1178 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:06 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
X 22473730..22474545 1..816 99 -> Plus
X 22474637..22474998 817..1178 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:10:51 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21875566..21876381 1..816 99 -> Plus
arm_X 21876473..21876834 817..1178 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:44 Download gff for RH65902.complete
Subject Subject Range Query Range Percent Splice Strand
X 22458822..22459637 1..816 99 -> Plus
X 22459729..22460090 817..1178 100   Plus

RH65902.pep Sequence

Translation from 80 to 1039

> RH65902.pep
MDTTEKALKEVTPAMLSLNNCPGTTPGTPMSKNQLKKQRKLAEFAELRKL
RREREREKKKQKRREAKELGLPVRTGPSRKELKKRQLADGGKSGLSVAID
LDYDDLMQERDIVKCVKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESF
KKNEGWENWHVQYYFDRGHTDIFEHSQLVYLTCESDRVLDKLQPGCTYVI
GGLVDHNHFKGLCHSRATSAGLTTARLPLSEHVDMKTRAVLSTYHVFELL
TKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQEAES
DKPTLTAVESEIESHSLDS*

RH65902.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21002-PA 345 GF21002-PA 37..345 14..319 1166 70.2 Plus
Dana\GF11967-PA 447 GF11967-PA 194..371 97..271 163 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19744-PA 328 GG19744-PA 1..328 1..319 1362 85.5 Plus
Dere\GG21899-PA 446 GG21899-PA 193..370 97..271 159 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20584-PA 308 GH20584-PA 8..277 11..276 1032 74.4 Plus
Dgri\GH19713-PA 453 GH19713-PA 203..380 97..271 156 26.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-PA 319 CG14618-PA 1..319 1..319 1679 100 Plus
rswl-PA 446 CG5190-PA 127..384 43..285 174 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19729-PA 324 GI19729-PA 1..306 1..302 1039 67.6 Plus
Dmoj\GI20132-PA 452 GI20132-PA 202..379 97..271 169 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13297-PA 304 GL13297-PA 1..284 1..282 1132 80.6 Plus
Dper\GL17781-PA 447 GL17781-PA 195..372 97..271 156 26.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13117-PA 304 GA13117-PA 1..284 1..282 1132 80.6 Plus
Dpse\GA18723-PA 447 GA18723-PA 195..372 97..271 156 26.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11730-PA 314 GM11730-PA 1..314 1..319 1397 87.4 Plus
Dsec\GM21890-PA 446 GM21890-PA 193..384 97..285 173 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17543-PA 277 GD17543-PA 1..277 1..319 1138 75.5 Plus
Dsim\GD11387-PA 446 GD11387-PA 193..384 97..285 175 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14967-PA 306 GJ14967-PA 9..298 13..303 1062 71.5 Plus
Dvir\GJ19902-PA 450 GJ19902-PA 200..377 97..271 156 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16187-PA 330 GK16187-PA 16..313 13..301 981 66.2 Plus
Dwil\GK23002-PA 442 GK23002-PA 187..377 97..284 170 27.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17939-PA 322 GE17939-PA 1..322 1..319 1361 86.7 Plus
Dyak\GE11974-PA 449 GE11974-PA 196..387 97..285 173 25.5 Plus

RH65902.hyp Sequence

Translation from 80 to 1039

> RH65902.hyp
MDTTEKALKEVTPAMLSLNNCPGTTPGTPMSKNQLKKQRKLAEFAELRKL
RREREREKKKQKRREAKELGLPVRTGPSRKELKKRQLADGGKSGLSVAID
LDYDDLMQERDIVKCVKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESF
KKNEGWENWHVQYYFDRGHTDIFEHSQLVYLTCESDRVLDKLQPGCTYVI
GGLVDHNHFKGLCHSRATSAGLTTARLPLSEHVDMKTRAVLSTYHVFELL
TKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQEAES
DKPTLTAVESEIESHSLDS*

RH65902.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14618-PA 319 CG14618-PA 1..319 1..319 1679 100 Plus
CG5190-PA 446 CG5190-PA 127..384 43..285 174 22.3 Plus