BDGP Sequence Production Resources |
Search the DGRC for RH65975
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 659 |
Well: | 75 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Srp19-RA |
Protein status: | RH65975.pep: gold |
Preliminary Size: | 565 |
Sequenced Size: | 649 |
Gene | Date | Evidence |
---|---|---|
CG4457 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4457 | 2002-02-22 | Blastp of sequenced clone |
CG4457 | 2003-01-01 | Sim4 clustering to Release 3 |
Srp19 | 2008-04-29 | Release 5.5 accounting |
Srp19 | 2008-08-15 | Release 5.9 accounting |
Srp19 | 2008-12-18 | 5.12 accounting |
649 bp (649 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089689
> RH65975.complete GAATTGGGTTGCTTGCGTGGAAAATAGCTTTCTAGCTCATTTTTTGTTAA TTACACAGGAATTGCAATAAACCAACCAAGAATTCACTGAAAGAATGGCG ACAGCAGTTCCCATGAAAAAAAACTGGAGCCCCAGCATGAAACACAACGA TATGGAGCGATGGATTTGCATATATCCCGCCTACATCAATAGGAAAAAGA CACGCCAGGAGGGTCGACGGCTGCCCAAGGAGAACTGTGTAGACAATCCC AGCTATATTGAGATTCGCGATGTGCTGTCCGTTTCCAACTTGCAGTTCCT CATGGAGAACAAGAAGTACTGTCGCGAGAACAGCAGCGAGATGGAGTTCC GTGGTCGTGTGCGCGTCCAGCTGCGTAATGTCGATGGCACTTTGTACAAT AATGACTTTCCCACGCGCGAGTCCATCATGCTGCATATCGCCAGCAAGAT ACCGCAGCTGAAGACGCGACAGAACAAATCCGGCGACTCGTACCACCAGC AGTCGCAGCCACAGTCGAATGCATCCGGATCTGGGGGTGGTGGTGGCGGC AAGAAGGGAAAGGGCAAGCGCCGCTAATGACTTCAGTGGCAACTCGTAGT TTGGTTTCTTTTGTAATAAACGCTGTAAACAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp19-RA | 716 | Srp19-RA | 22..655 | 2..635 | 3155 | 99.8 | Plus |
Srp19.b | 611 | Srp19.b | 169..611 | 192..634 | 2200 | 99.7 | Plus |
Srp19.a | 658 | Srp19.a | 217..658 | 193..634 | 2195 | 99.7 | Plus |
Srp19.b | 611 | Srp19.b | 12..169 | 2..159 | 790 | 100 | Plus |
Srp19.a | 658 | Srp19.a | 12..169 | 2..159 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1468..1522 | 18..72 | 113 | 67.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7339442..7339916 | 160..634 | 99 | <- | Minus |
chr3L | 7339989..7340146 | 1..159 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..483 | 95..577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..483 | 95..577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..483 | 95..577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..483 | 95..577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..483 | 95..577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..633 | 2..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 11..644 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 20..653 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 1..633 | 2..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp19-RA | 20..653 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7347310..7347784 | 160..634 | 99 | <- | Minus |
3L | 7347857..7348014 | 1..159 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7347310..7347784 | 160..634 | 99 | <- | Minus |
3L | 7347857..7348014 | 1..159 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7347310..7347784 | 160..634 | 99 | <- | Minus |
3L | 7347857..7348014 | 1..159 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7340410..7340884 | 160..634 | 99 | <- | Minus |
arm_3L | 7340957..7341114 | 1..159 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7340410..7340884 | 160..634 | 99 | <- | Minus |
3L | 7340957..7341114 | 1..159 | 99 | Minus |
Translation from 94 to 576
> RH65975.pep MATAVPMKKNWSPSMKHNDMERWICIYPAYINRKKTRQEGRRLPKENCVD NPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEFRGRVRVQLRNVDGTL YNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQQSQPQSNASGSGGGG GGKKGKGKRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25121-PA | 162 | GF25121-PA | 1..134 | 1..134 | 639 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14974-PA | 161 | GG14974-PA | 1..143 | 1..143 | 688 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16090-PA | 161 | GH16090-PA | 1..138 | 1..141 | 571 | 72.3 | Plus |
Dgri\GH23602-PA | 102 | GH23602-PA | 19..79 | 78..141 | 214 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp19-PA | 160 | CG4457-PA | 1..160 | 1..160 | 853 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12354-PA | 156 | GI12354-PA | 1..137 | 1..140 | 564 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21099-PA | 165 | GL21099-PA | 1..135 | 1..135 | 546 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18198-PA | 169 | GA18198-PA | 1..135 | 1..135 | 548 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13769-PA | 160 | GM13769-PA | 1..143 | 1..143 | 743 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13067-PA | 160 | GD13067-PA | 1..143 | 1..143 | 748 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12246-PA | 158 | GJ12246-PA | 1..139 | 1..142 | 569 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16666-PA | 166 | GK16666-PA | 1..130 | 1..130 | 568 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20421-PA | 161 | GE20421-PA | 1..131 | 1..131 | 623 | 87 | Plus |
Translation from 94 to 576
> RH65975.hyp MATAVPMKKNWSPSMKHNDMERWICIYPAYINRKKTRQEGRRLPKENCVD NPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEFRGRVRVQLRNVDGTL YNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQQSQPQSNASGSGGGG GGKKGKGKRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp19-PA | 160 | CG4457-PA | 1..160 | 1..160 | 853 | 100 | Plus |