Clone RH66343 Report

Search the DGRC for RH66343

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:663
Well:43
Vector:pFlc-1
Associated Gene/Transcriptrho-7-RA
Protein status:RH66343.pep: gold
Preliminary Size:1121
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8972 2002-01-01 Sim4 clustering to Release 2
CG8972 2002-06-13 Blastp of sequenced clone
CG8972 2003-01-01 Sim4 clustering to Release 3
rho-7 2008-04-29 Release 5.5 accounting
rho-7 2008-08-15 Release 5.9 accounting
rho-7 2008-12-18 5.12 accounting

Clone Sequence Records

RH66343.complete Sequence

1313 bp (1313 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122236

> RH66343.complete
GATACTTTTCCGGGCCCTTCTCTCCAGAAAGCAAAATAGAAACAAATTTT
CCATATTTCATGCTAAATTGGCACAGATCCGTACTACTATGCTCATGAGT
CGAGCGCTTTGCCGGAGCTGGCTACCCCAGGTGGCCCGCAGATGTCATGC
TAATGTGAATGTGCCAATCCTGCGGATAAACTCTGGTCATCCGGCGGCGA
GGTCATGTCGGCAGATTCACAGCAACCGAAAACAGAGCAGCAACCTGAAG
CCGACGACTGGGGAGCCTGCGGCAGCGGAGCAGAACACCCCGGTGCCGGT
GAACAATGTGATCAAGGCGGTGGCCTTCACGGGAGCATTTACGGTCGGCT
GCTTTGCGGGTGCCACCATCCTGGAGTACGAGAACACACGTAGCCTAATC
CTAGAAAAGGCTCGCCAGGCGAGATTCGGTTGGTGGCAGAGTCGTTCGCT
GGCGGACAGGGATTACTGGACACAGATCAAACAAGACATCCGGCGGCACT
GGGACTCACTGACACCCGGCGACAAGATGTTTGCTCCTATCTTACTCTGC
AATTTGGTGGCCTTCGCCATGTGGCGGGTGCCCGCTCTGAAATCCACAAT
GATTACCTACTTCACATCCAATCCAGCGGCGAAAGTCGTCTGCTGGCCCA
TGTTCCTGTCCACATTCAGCCATTACTCGGCTATGCACCTTTTCGCCAAT
ATGTACGTGATGCACAGCTTTGCCAACGCTGCGGCTGTATCGTTGGGTAA
AGAGCAATTCTTAGCGGTCTACCTCAGCGCCGGCGTCTTCTCCAGTCTGA
TGAGCGTGCTCTACAAGGCGGCCACGAGTCAGGCGGGGATGTCCCTGGGT
GCGTCTGGAGCTATAATGACACTGCTGGCCTATGTATGCACCCAGTATCC
GGACACACAACTTAGCATTCTCTTTCTACCCGCGTTGACATTCTCCGCTG
GAGCTGGTATTAAAGTGCTAATGGGCATCGACTTTGCTGGCGTCGTGATG
GGCTGGAAGTTCTTCGATCACGCAGCGCATTTGGGCGGCGCCATGTTTGG
CATCTTTTGGGCCACGTATGGGGCACAGATATGGGCAAAGCGCATTGGTC
TACTGAATTACTACCATGACCTGCGCCGGACGAAGCAGAAATAGTACAGG
AGGCTTGGGGATTCGCCAAGTGAACGGACGGGGAGCTGAGGCAATAGAGC
GGTAGCGAGTAGCACTACGCTGTGTCAATAAGAGTGACATCGTTCTGCCT
TAGAAGTTCATTGAAATCAGTTAAGTTGAATAAATCGTTGACATCCTGCA
AAAAAAAAAAAAA

RH66343.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RA 1416 rho-7-RA 73..1369 2..1298 6485 100 Plus
rho-7.d 1536 rho-7.d 35..1331 2..1298 6485 100 Plus
rho-7.f 1533 rho-7.f 35..1328 2..1298 6415 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7875216..7875510 632..338 1460 99.7 Minus
chr2R 21145070 chr2R 7873932..7874176 1298..1054 1225 100 Minus
chr2R 21145070 chr2R 7874495..7874715 853..633 1105 100 Minus
chr2R 21145070 chr2R 7875576..7875777 337..136 1010 100 Minus
chr2R 21145070 chr2R 7874241..7874441 1053..853 1005 100 Minus
chr2R 21145070 chr2R 7875837..7875970 135..2 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11988002..11988296 632..338 1475 100 Minus
2R 25286936 2R 11986718..11986962 1298..1054 1225 100 Minus
2R 25286936 2R 11987281..11987501 853..633 1105 100 Minus
2R 25286936 2R 11988362..11988563 337..136 1010 100 Minus
2R 25286936 2R 11987027..11987227 1053..853 1005 100 Minus
2R 25286936 2R 11988623..11988756 135..2 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11989201..11989495 632..338 1475 100 Minus
2R 25260384 2R 11987917..11988161 1298..1054 1225 100 Minus
2R 25260384 2R 11988480..11988700 853..633 1105 100 Minus
2R 25260384 2R 11989561..11989762 337..136 1010 100 Minus
2R 25260384 2R 11988226..11988426 1053..853 1005 100 Minus
2R 25260384 2R 11989822..11989955 135..2 670 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:28:06 has no hits.

RH66343.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:29:25 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7873931..7874176 1054..1299 99 <- Minus
chr2R 7874241..7874440 854..1053 100 <- Minus
chr2R 7874495..7874715 633..853 100 <- Minus
chr2R 7875216..7875510 338..632 99 <- Minus
chr2R 7875576..7875777 136..337 100 <- Minus
chr2R 7875837..7875970 1..135 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:33 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 89..1144 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:51 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 89..1144 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:52 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 89..1144 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:48 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 89..1144 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:19:31 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 89..1144 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:48 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1297 2..1299 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:51 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1297 2..1299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:52 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 31..1328 1..1298 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:48 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1297 2..1299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:31 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 31..1328 1..1298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:25 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11988623..11988756 1..135 99   Minus
2R 11986717..11986962 1054..1299 99 <- Minus
2R 11987027..11987226 854..1053 100 <- Minus
2R 11987281..11987501 633..853 100 <- Minus
2R 11988002..11988296 338..632 100 <- Minus
2R 11988362..11988563 136..337 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:25 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11988623..11988756 1..135 99   Minus
2R 11986717..11986962 1054..1299 99 <- Minus
2R 11987027..11987226 854..1053 100 <- Minus
2R 11987281..11987501 633..853 100 <- Minus
2R 11988002..11988296 338..632 100 <- Minus
2R 11988362..11988563 136..337 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:25 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11988623..11988756 1..135 99   Minus
2R 11986717..11986962 1054..1299 99 <- Minus
2R 11987027..11987226 854..1053 100 <- Minus
2R 11987281..11987501 633..853 100 <- Minus
2R 11988002..11988296 338..632 100 <- Minus
2R 11988362..11988563 136..337 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:52 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874786..7875006 633..853 100 <- Minus
arm_2R 7875507..7875801 338..632 100 <- Minus
arm_2R 7875867..7876068 136..337 100 <- Minus
arm_2R 7874222..7874467 1054..1299 99 <- Minus
arm_2R 7874532..7874731 854..1053 100 <- Minus
arm_2R 7876128..7876261 1..135 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:20 Download gff for RH66343.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11989561..11989762 136..337 100 <- Minus
2R 11989822..11989955 1..135 99   Minus
2R 11987916..11988161 1054..1299 99 <- Minus
2R 11988226..11988425 854..1053 100 <- Minus
2R 11988480..11988700 633..853 100 <- Minus
2R 11989201..11989495 338..632 100 <- Minus

RH66343.hyp Sequence

Translation from 0 to 1143

> RH66343.hyp
ILFRALLSRKQNRNKFSIFHAKLAQIRTTMLMSRALCRSWLPQVARRCHA
NVNVPILRINSGHPAARSCRQIHSNRKQSSNLKPTTGEPAAAEQNTPVPV
NNVIKAVAFTGAFTVGCFAGATILEYENTRSLILEKARQARFGWWQSRSL
ADRDYWTQIKQDIRRHWDSLTPGDKMFAPILLCNLVAFAMWRVPALKSTM
ITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVMHSFANAAAVSLGK
EQFLAVYLSAGVFSSLMSVLYKAATSQAGMSLGASGAIMTLLAYVCTQYP
DTQLSILFLPALTFSAGAGIKVLMGIDFAGVVMGWKFFDHAAHLGGAMFG
IFWATYGAQIWAKRIGLLNYYHDLRRTKQK*

RH66343.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-PB 351 CG8972-PB 1..351 30..380 1846 100 Plus
rho-7-PA 351 CG8972-PA 1..351 30..380 1846 100 Plus

RH66343.pep Sequence

Translation from 88 to 1143

> RH66343.pep
MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS
SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT
RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP
ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH
LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG
MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA
GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ
K*

RH66343.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11795-PA 349 GF11795-PA 1..349 1..351 1643 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22614-PA 351 GG22614-PA 1..351 1..351 1807 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20399-PA 345 GH20399-PA 1..345 1..351 1330 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-PB 351 CG8972-PB 1..351 1..351 1846 100 Plus
rho-7-PA 351 CG8972-PA 1..351 1..351 1846 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19585-PA 356 GI19585-PA 1..356 1..351 1367 70.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20022-PA 349 GL20022-PA 1..349 1..351 1356 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21446-PA 349 GA21446-PA 1..349 1..351 1351 71.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20394-PA 351 GM20394-PA 1..351 1..351 1870 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25869-PA 351 GD25869-PA 1..351 1..351 1870 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18325-PA 353 GJ18325-PA 1..353 1..351 1369 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22246-PA 363 GK22246-PA 1..363 1..351 1400 71.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13484-PA 351 GE13484-PA 1..351 1..351 1796 93.7 Plus