BDGP Sequence Production Resources |
Search the DGRC for RH66343
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 663 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | rho-7-RA |
Protein status: | RH66343.pep: gold |
Preliminary Size: | 1121 |
Sequenced Size: | 1313 |
Gene | Date | Evidence |
---|---|---|
CG8972 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8972 | 2002-06-13 | Blastp of sequenced clone |
CG8972 | 2003-01-01 | Sim4 clustering to Release 3 |
rho-7 | 2008-04-29 | Release 5.5 accounting |
rho-7 | 2008-08-15 | Release 5.9 accounting |
rho-7 | 2008-12-18 | 5.12 accounting |
1313 bp (1313 high quality bases) assembled on 2002-06-13
GenBank Submission: AY122236
> RH66343.complete GATACTTTTCCGGGCCCTTCTCTCCAGAAAGCAAAATAGAAACAAATTTT CCATATTTCATGCTAAATTGGCACAGATCCGTACTACTATGCTCATGAGT CGAGCGCTTTGCCGGAGCTGGCTACCCCAGGTGGCCCGCAGATGTCATGC TAATGTGAATGTGCCAATCCTGCGGATAAACTCTGGTCATCCGGCGGCGA GGTCATGTCGGCAGATTCACAGCAACCGAAAACAGAGCAGCAACCTGAAG CCGACGACTGGGGAGCCTGCGGCAGCGGAGCAGAACACCCCGGTGCCGGT GAACAATGTGATCAAGGCGGTGGCCTTCACGGGAGCATTTACGGTCGGCT GCTTTGCGGGTGCCACCATCCTGGAGTACGAGAACACACGTAGCCTAATC CTAGAAAAGGCTCGCCAGGCGAGATTCGGTTGGTGGCAGAGTCGTTCGCT GGCGGACAGGGATTACTGGACACAGATCAAACAAGACATCCGGCGGCACT GGGACTCACTGACACCCGGCGACAAGATGTTTGCTCCTATCTTACTCTGC AATTTGGTGGCCTTCGCCATGTGGCGGGTGCCCGCTCTGAAATCCACAAT GATTACCTACTTCACATCCAATCCAGCGGCGAAAGTCGTCTGCTGGCCCA TGTTCCTGTCCACATTCAGCCATTACTCGGCTATGCACCTTTTCGCCAAT ATGTACGTGATGCACAGCTTTGCCAACGCTGCGGCTGTATCGTTGGGTAA AGAGCAATTCTTAGCGGTCTACCTCAGCGCCGGCGTCTTCTCCAGTCTGA TGAGCGTGCTCTACAAGGCGGCCACGAGTCAGGCGGGGATGTCCCTGGGT GCGTCTGGAGCTATAATGACACTGCTGGCCTATGTATGCACCCAGTATCC GGACACACAACTTAGCATTCTCTTTCTACCCGCGTTGACATTCTCCGCTG GAGCTGGTATTAAAGTGCTAATGGGCATCGACTTTGCTGGCGTCGTGATG GGCTGGAAGTTCTTCGATCACGCAGCGCATTTGGGCGGCGCCATGTTTGG CATCTTTTGGGCCACGTATGGGGCACAGATATGGGCAAAGCGCATTGGTC TACTGAATTACTACCATGACCTGCGCCGGACGAAGCAGAAATAGTACAGG AGGCTTGGGGATTCGCCAAGTGAACGGACGGGGAGCTGAGGCAATAGAGC GGTAGCGAGTAGCACTACGCTGTGTCAATAAGAGTGACATCGTTCTGCCT TAGAAGTTCATTGAAATCAGTTAAGTTGAATAAATCGTTGACATCCTGCA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7875216..7875510 | 632..338 | 1460 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 7873932..7874176 | 1298..1054 | 1225 | 100 | Minus |
chr2R | 21145070 | chr2R | 7874495..7874715 | 853..633 | 1105 | 100 | Minus |
chr2R | 21145070 | chr2R | 7875576..7875777 | 337..136 | 1010 | 100 | Minus |
chr2R | 21145070 | chr2R | 7874241..7874441 | 1053..853 | 1005 | 100 | Minus |
chr2R | 21145070 | chr2R | 7875837..7875970 | 135..2 | 670 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11988002..11988296 | 632..338 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 11986718..11986962 | 1298..1054 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 11987281..11987501 | 853..633 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 11988362..11988563 | 337..136 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 11987027..11987227 | 1053..853 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 11988623..11988756 | 135..2 | 670 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11989201..11989495 | 632..338 | 1475 | 100 | Minus |
2R | 25260384 | 2R | 11987917..11988161 | 1298..1054 | 1225 | 100 | Minus |
2R | 25260384 | 2R | 11988480..11988700 | 853..633 | 1105 | 100 | Minus |
2R | 25260384 | 2R | 11989561..11989762 | 337..136 | 1010 | 100 | Minus |
2R | 25260384 | 2R | 11988226..11988426 | 1053..853 | 1005 | 100 | Minus |
2R | 25260384 | 2R | 11989822..11989955 | 135..2 | 670 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7873931..7874176 | 1054..1299 | 99 | <- | Minus |
chr2R | 7874241..7874440 | 854..1053 | 100 | <- | Minus |
chr2R | 7874495..7874715 | 633..853 | 100 | <- | Minus |
chr2R | 7875216..7875510 | 338..632 | 99 | <- | Minus |
chr2R | 7875576..7875777 | 136..337 | 100 | <- | Minus |
chr2R | 7875837..7875970 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1056 | 89..1144 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1056 | 89..1144 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1056 | 89..1144 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1056 | 89..1144 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1056 | 89..1144 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1297 | 2..1299 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1297 | 2..1299 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 31..1328 | 1..1298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 1..1297 | 2..1299 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-7-RA | 31..1328 | 1..1298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11988623..11988756 | 1..135 | 99 | Minus | |
2R | 11986717..11986962 | 1054..1299 | 99 | <- | Minus |
2R | 11987027..11987226 | 854..1053 | 100 | <- | Minus |
2R | 11987281..11987501 | 633..853 | 100 | <- | Minus |
2R | 11988002..11988296 | 338..632 | 100 | <- | Minus |
2R | 11988362..11988563 | 136..337 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11988623..11988756 | 1..135 | 99 | Minus | |
2R | 11986717..11986962 | 1054..1299 | 99 | <- | Minus |
2R | 11987027..11987226 | 854..1053 | 100 | <- | Minus |
2R | 11987281..11987501 | 633..853 | 100 | <- | Minus |
2R | 11988002..11988296 | 338..632 | 100 | <- | Minus |
2R | 11988362..11988563 | 136..337 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11988623..11988756 | 1..135 | 99 | Minus | |
2R | 11986717..11986962 | 1054..1299 | 99 | <- | Minus |
2R | 11987027..11987226 | 854..1053 | 100 | <- | Minus |
2R | 11987281..11987501 | 633..853 | 100 | <- | Minus |
2R | 11988002..11988296 | 338..632 | 100 | <- | Minus |
2R | 11988362..11988563 | 136..337 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7874786..7875006 | 633..853 | 100 | <- | Minus |
arm_2R | 7875507..7875801 | 338..632 | 100 | <- | Minus |
arm_2R | 7875867..7876068 | 136..337 | 100 | <- | Minus |
arm_2R | 7874222..7874467 | 1054..1299 | 99 | <- | Minus |
arm_2R | 7874532..7874731 | 854..1053 | 100 | <- | Minus |
arm_2R | 7876128..7876261 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11989561..11989762 | 136..337 | 100 | <- | Minus |
2R | 11989822..11989955 | 1..135 | 99 | Minus | |
2R | 11987916..11988161 | 1054..1299 | 99 | <- | Minus |
2R | 11988226..11988425 | 854..1053 | 100 | <- | Minus |
2R | 11988480..11988700 | 633..853 | 100 | <- | Minus |
2R | 11989201..11989495 | 338..632 | 100 | <- | Minus |
Translation from 0 to 1143
> RH66343.hyp ILFRALLSRKQNRNKFSIFHAKLAQIRTTMLMSRALCRSWLPQVARRCHA NVNVPILRINSGHPAARSCRQIHSNRKQSSNLKPTTGEPAAAEQNTPVPV NNVIKAVAFTGAFTVGCFAGATILEYENTRSLILEKARQARFGWWQSRSL ADRDYWTQIKQDIRRHWDSLTPGDKMFAPILLCNLVAFAMWRVPALKSTM ITYFTSNPAAKVVCWPMFLSTFSHYSAMHLFANMYVMHSFANAAAVSLGK EQFLAVYLSAGVFSSLMSVLYKAATSQAGMSLGASGAIMTLLAYVCTQYP DTQLSILFLPALTFSAGAGIKVLMGIDFAGVVMGWKFFDHAAHLGGAMFG IFWATYGAQIWAKRIGLLNYYHDLRRTKQK*
Translation from 88 to 1143
> RH66343.pep MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ K*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11795-PA | 349 | GF11795-PA | 1..349 | 1..351 | 1643 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22614-PA | 351 | GG22614-PA | 1..351 | 1..351 | 1807 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20399-PA | 345 | GH20399-PA | 1..345 | 1..351 | 1330 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-7-PB | 351 | CG8972-PB | 1..351 | 1..351 | 1846 | 100 | Plus |
rho-7-PA | 351 | CG8972-PA | 1..351 | 1..351 | 1846 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19585-PA | 356 | GI19585-PA | 1..356 | 1..351 | 1367 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20022-PA | 349 | GL20022-PA | 1..349 | 1..351 | 1356 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21446-PA | 349 | GA21446-PA | 1..349 | 1..351 | 1351 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20394-PA | 351 | GM20394-PA | 1..351 | 1..351 | 1870 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25869-PA | 351 | GD25869-PA | 1..351 | 1..351 | 1870 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18325-PA | 353 | GJ18325-PA | 1..353 | 1..351 | 1369 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22246-PA | 363 | GK22246-PA | 1..363 | 1..351 | 1400 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13484-PA | 351 | GE13484-PA | 1..351 | 1..351 | 1796 | 93.7 | Plus |