RH66388.complete Sequence
3489 bp (3489 high quality bases) assembled on 2002-10-28
GenBank Submission: BT001860
> RH66388.complete
ATCTGTTGCATTAATATTTGCCGACAATTTGTCGTCTGAGTTGTCGCTCA
CTGCCGGCTGCAGTGCCACAAAAATTAAATTAAAAATGCCAGAAGAACTC
TGCGACCCAGCAGCAATTGTTGCAGTACGCAGTTTGCAGTTCGCTGTCGT
CATTGAGTGGAAAAAAGAGGAGATAAAAATGTCTACACATTAATTTTAGT
CTTGTGGCTTTTTCACTTATCAGCCCTCGAGAAAATTAAGGACAAGCGCT
TAAATTTCCCACTGACAGTCGACCAGAGTTGGCTTTTATGGACCATGACA
ACTGGGCTTTCAATTTACGGATTTCTCGGCCCAAAAATGGTCCGACAACT
AATTGCATTTGCTGCGGGCAGCAGGTGAATATTCCTCCGGTGCTCTCGGT
GCCCATGTATTTGCGGTGGATTTTTAGGCCCGACCACCCACCTGTCATTA
GGACGGACACACGGGGAATGGTCGAAAAAGCATTCCGACCAAACAGCCAA
ACCAATAATAAAGCAATCACCGCCTGCTAATGTCCCCAGCGGAGGTTGAC
AGCCCATATGGGGGGCTTACACCGATCGAGGAACATATTGAATACTCACC
GCACTCGCTGCCCTCATCGGACATGTCCGGACAATCGGCCTTGGAATCGC
ATTTCCATCGCATCGGTATGCAGAAGCCATCGTTGCATGTGAAGTACGAG
GCTGGACAAGGACCTGCAATGGGATAGATGACGGAATAATGGTCACTCAG
GATGCAAAGGAAGAACGAGGAAGTGCAGGCTGCCAGCCATTCAATCATTT
GAGTCTCGGCCACAGTTTGCATACTAATGAGTGCAAGGTGGTGTGTGCGA
ACGAAACTATTATGCTAATCACAAATGGTTCCATTGTTGTCAAAGAGCTA
TTCATCCCAACACTAGGGATTAGCTAGAGTGCCAGCCTGTACCTAAACGA
TATCTTAAGTGCGATAATAAATATTCAGATAGCTAATTATATTAAAATAT
GACATATTTACATTATTTGCAAAACAATTTATATCCTTGATTTTAGCGCA
TTACTCTAATCCAATTCAGCCGCCAACGCACGCTCACATAAATTATTCCC
GAACAATAATATTCTCCATCACTTGGTCCACAGCTGCGTCCAAAAGGTTG
CCAAATTATTTTTCCATTTAATATGCAGAGTGGCGACGTGTTAACGCCAC
CTTGCCAAACACCATCACCCACCACCCACCACCCAACGAAAAAGCCCGAT
GCTGTTCCATACTCTTTCCCAAAAATGCCAGATAATTTCAATGTTTATGC
AGTTGTTGTAGGCCAGTACGTGCCTACAATTAAACATTAACAACGGACCC
ACATTGCTGGAAGCCAAATGCCGAGGTACGTGACTCGGGAACACTGCATC
ATTAGGCCGGTCGAAGCTGTTGCTAGCATTCCGTAAACAATAAAAAAGTA
ATTTAAATTTGCTTAGCGCATAAGTAAGTGGGAATCGGAAATGTGCCCAG
CTTCCTGGTGACAGCATTTTCGGATCCAGAAGACCCACTTTCCCAACTCA
AACAAAAAGCATTCGACTCGTTTACTCAGCCGCCCAAAAGCTGAACTTTG
GATTGCCATAAAAGCCATGTCCAGGACAGTGCAGCAACATAACGCATTCA
ACAGCCATGTCATTGAAGTGGCTCTTCTTCATAGCCCTAGTGGCGCTGCT
CAGCATTGGTACAGGTTCCCTGGCCCAGCCCAGCTGGCCCGCCACGCGGG
CCAGACCTGCTCTGGAGCAGCAGATGCGCCTCCAGCGCTTGAATGCCAAA
TACTATGCCATTCAGCAGGACGAAGAGGATGGCGATGACATCCTGGAGCA
CGAAGAGGACCTGGCCGACGCTAGTGAGGACGAGGAGGGAGATGATATCA
AGGATGGAGAGGAGGAGGAAGACGAAAAGGAGAACAAAAAACTGCATACC
AAAAAGGTGACCGCTAACATCACACCCGCCAAGCCGAAGACTGAAGTCAA
GCACAAGCTGGCGAAGGAGCAGGAGTCCATCGATGAACTGCAGGACCTTG
AGGAGCCCGAGGACGAGGCCGAGGAGGAGCTGGAGCAGGAAATCGACCTC
TCACGCGTTGAGCCACGCAATCGCCGACGCGGTGGCAGGCGGAACGGTAA
GGGCCGACGCAAGGGGCGTGGAAGCAGTAAACGCAGGAGGGGAAACCGCA
GGTGCGGCGGCAGGGGAAAGCGCGGCCGTCGTGGCCAACGGAAACGGACT
CCTTCGAAGCGCAGCGGCCACAAGCGGCGAACGGGCTCGAAAACCAAGCG
ACAGGGTCAGAAAAACAAAACAGCCGCCAACAAGGAAGCTGTCGCGCCAT
CAAACAAGGTGGCCTAACGCGCTGGACACTCCCACCTACAAATGCAGCTT
TAAAACTCATTAAAACAGCAGCGAAAATACTAATAAATAAACCACAACAA
AATCTTGCTTCCTTCCATCCGATGTACATATATATATATAGAAAAGGACA
CTTTCCAGGGTTCCATTTACAAAGCTAGCTTTTCCTAGAATATCTACTTC
CAAAGGATATTAGGCCGAAAAAGCTGTTAATCATAATATACTAAGGAAAA
AATTTCTGACAGTTTCATAAATGAACCTATTACAATGGTTGTGAACGTTG
AACAGATAGAATAATCACTGAACCTTGAAGTTTGTTTTCTATACAGTAAA
CTGAAACAAATTTATTCAATCAAATTCGGAAAAAAGTACAAGTTTAAGCC
CAGTAAATAATAGATTAATTTAAAACAAGTTTTGCACAGGATGTGTTTTG
CACCTCAACATAGTAGAAGAGCTTAACAGCAGCGAATTGCAAATATTGCT
GGATATATGCATCGGAATGAACTTTATTGTAGCATACTTTTCGGACCAAA
CACTCACGTATTTCGCCAGAGAAAGTTTTTATCGCGAACTCATGCACAGG
TGTGTGTGCGCCAGGTAGCAACCGCAAGTCATAAATTTCGCAGCTATTCC
GCTTTTGTTATAGTGCTTTTTTATGTATTTATGCTGGTATGCTCTCATGA
CCCCATAAATTATAGAGCGCTGCAATTTCGTTTAGCGGCTTTTGCACTGT
TCGAAATTAGTTTTACGCCTCTTTTTGATTTAGTTCGCACTGAGGTTTAG
TGCTTGCTCCACATAAAATCAAAATAAGGGATTCGCGCTGCAGTTGGTGA
GCCAGCTCCAACTCCAACTCCCAAATCTGACTGGGATGCACTCAATTTCA
GTTGGTTTTCCCTTCAGCTTATCTTTTGCCCGGCTGCCTTGGTCACTGGG
TTCGTTTACCTGACAGCGTCGTCATGCCAATCGTTTGTTTAAGGATGTTC
CGCTGAAAGTTCTTTGGAGTCAATTGGAATGTTTCACAGAGGATTCGAGG
AAACGAAGTTCTCGTTAAGTGTTTTTAAGGATTTTACTTAAAAGAAAGAA
GAGAATCTTTTGCTATTGAAATAGAAAAAAAAAAAAAAA
RH66388.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14756-RA | 819 | CG14756-RA | 1..819 | 1634..2452 | 4095 | 100 | Plus |
CG33087-RC | 14423 | CG33087-RC | 1..223 | 822..600 | 1100 | 99.5 | Minus |
CG33087.a | 14501 | CG33087.a | 168..283 | 715..600 | 580 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 4091402..4094875 | 3474..1 | 17235 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8203851..8207339 | 3489..1 | 17400 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 8205050..8208538 | 3489..1 | 17400 | 99.9 | Minus |
Blast to na_te.dros performed on 2019-03-15 14:36:28 has no hits.
RH66388.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:37:37 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 4091402..4092941 | 1935..3474 | 99 | == | Minus |
chr2R | 4093001..4094875 | 1..1875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:35 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..711 | 1657..2367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:46 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..711 | 1657..2367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:36:51 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..711 | 1657..2367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:59:43 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..711 | 1657..2367 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:33 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..711 | 1657..2367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:29:22 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..819 | 1634..2452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:46 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..819 | 1634..2452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:36:51 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..819 | 1634..2452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:59:44 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..819 | 1634..2452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:33 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14756-RA | 1..819 | 1634..2452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8203866..8207339 | 1..3474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8203866..8207339 | 1..3474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8203866..8207339 | 1..3474 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:36:51 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4091371..4094844 | 1..3474 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:08 Download gff for
RH66388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8205065..8208538 | 1..3474 | 99 | | Minus |
RH66388.hyp Sequence
Translation from 1656 to 2366
> RH66388.hyp
MSLKWLFFIALVALLSIGTGSLAQPSWPATRARPALEQQMRLQRLNAKYY
AIQQDEEDGDDILEHEEDLADASEDEEGDDIKDGEEEEDEKENKKLHTKK
VTANITPAKPKTEVKHKLAKEQESIDELQDLEEPEDEAEEELEQEIDLSR
VEPRNRRRGGRRNGKGRRKGRGSSKRRRGNRRCGGRGKRGRRGQRKRTPS
KRSGHKRRTGSKTKRQGQKNKTAANKEAVAPSNKVA*
RH66388.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14756-PA | 236 | CG14756-PA | 1..236 | 1..236 | 1213 | 100 | Plus |
RH66388.pep Sequence
Translation from 1656 to 2366
> RH66388.pep
MSLKWLFFIALVALLSIGTGSLAQPSWPATRARPALEQQMRLQRLNAKYY
AIQQDEEDGDDILEHEEDLADASEDEEGDDIKDGEEEEDEKENKKLHTKK
VTANITPAKPKTEVKHKLAKEQESIDELQDLEEPEDEAEEELEQEIDLSR
VEPRNRRRGGRRNGKGRRKGRGSSKRRRGNRRCGGRGKRGRRGQRKRTPS
KRSGHKRRTGSKTKRQGQKNKTAANKEAVAPSNKVA*
RH66388.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF12604-PA | 247 | GF12604-PA | 1..247 | 1..236 | 218 | 45.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10664-PA | 234 | GG10664-PA | 1..234 | 1..236 | 605 | 74.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14756-PA | 236 | CG14756-PA | 1..236 | 1..236 | 1213 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20710-PA | 241 | GM20710-PA | 1..241 | 1..236 | 503 | 84.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD10177-PA | 241 | GD10177-PA | 1..241 | 1..236 | 491 | 84.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23219-PA | 241 | GE23219-PA | 1..241 | 1..236 | 554 | 81.7 | Plus |