Clone RH66388 Report

Search the DGRC for RH66388

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:663
Well:88
Vector:pFlc-1
Associated Gene/TranscriptCG14756-RA
Protein status:RH66388.pep: gold
Preliminary Size:711
Sequenced Size:3489

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14756 2002-10-28 Blastp of sequenced clone
CG14756 2003-01-01 Sim4 clustering to Release 3
CG14756 2008-04-29 Release 5.5 accounting
CG14756 2008-08-15 Release 5.9 accounting
CG14756 2008-12-18 5.12 accounting

Clone Sequence Records

RH66388.complete Sequence

3489 bp (3489 high quality bases) assembled on 2002-10-28

GenBank Submission: BT001860

> RH66388.complete
ATCTGTTGCATTAATATTTGCCGACAATTTGTCGTCTGAGTTGTCGCTCA
CTGCCGGCTGCAGTGCCACAAAAATTAAATTAAAAATGCCAGAAGAACTC
TGCGACCCAGCAGCAATTGTTGCAGTACGCAGTTTGCAGTTCGCTGTCGT
CATTGAGTGGAAAAAAGAGGAGATAAAAATGTCTACACATTAATTTTAGT
CTTGTGGCTTTTTCACTTATCAGCCCTCGAGAAAATTAAGGACAAGCGCT
TAAATTTCCCACTGACAGTCGACCAGAGTTGGCTTTTATGGACCATGACA
ACTGGGCTTTCAATTTACGGATTTCTCGGCCCAAAAATGGTCCGACAACT
AATTGCATTTGCTGCGGGCAGCAGGTGAATATTCCTCCGGTGCTCTCGGT
GCCCATGTATTTGCGGTGGATTTTTAGGCCCGACCACCCACCTGTCATTA
GGACGGACACACGGGGAATGGTCGAAAAAGCATTCCGACCAAACAGCCAA
ACCAATAATAAAGCAATCACCGCCTGCTAATGTCCCCAGCGGAGGTTGAC
AGCCCATATGGGGGGCTTACACCGATCGAGGAACATATTGAATACTCACC
GCACTCGCTGCCCTCATCGGACATGTCCGGACAATCGGCCTTGGAATCGC
ATTTCCATCGCATCGGTATGCAGAAGCCATCGTTGCATGTGAAGTACGAG
GCTGGACAAGGACCTGCAATGGGATAGATGACGGAATAATGGTCACTCAG
GATGCAAAGGAAGAACGAGGAAGTGCAGGCTGCCAGCCATTCAATCATTT
GAGTCTCGGCCACAGTTTGCATACTAATGAGTGCAAGGTGGTGTGTGCGA
ACGAAACTATTATGCTAATCACAAATGGTTCCATTGTTGTCAAAGAGCTA
TTCATCCCAACACTAGGGATTAGCTAGAGTGCCAGCCTGTACCTAAACGA
TATCTTAAGTGCGATAATAAATATTCAGATAGCTAATTATATTAAAATAT
GACATATTTACATTATTTGCAAAACAATTTATATCCTTGATTTTAGCGCA
TTACTCTAATCCAATTCAGCCGCCAACGCACGCTCACATAAATTATTCCC
GAACAATAATATTCTCCATCACTTGGTCCACAGCTGCGTCCAAAAGGTTG
CCAAATTATTTTTCCATTTAATATGCAGAGTGGCGACGTGTTAACGCCAC
CTTGCCAAACACCATCACCCACCACCCACCACCCAACGAAAAAGCCCGAT
GCTGTTCCATACTCTTTCCCAAAAATGCCAGATAATTTCAATGTTTATGC
AGTTGTTGTAGGCCAGTACGTGCCTACAATTAAACATTAACAACGGACCC
ACATTGCTGGAAGCCAAATGCCGAGGTACGTGACTCGGGAACACTGCATC
ATTAGGCCGGTCGAAGCTGTTGCTAGCATTCCGTAAACAATAAAAAAGTA
ATTTAAATTTGCTTAGCGCATAAGTAAGTGGGAATCGGAAATGTGCCCAG
CTTCCTGGTGACAGCATTTTCGGATCCAGAAGACCCACTTTCCCAACTCA
AACAAAAAGCATTCGACTCGTTTACTCAGCCGCCCAAAAGCTGAACTTTG
GATTGCCATAAAAGCCATGTCCAGGACAGTGCAGCAACATAACGCATTCA
ACAGCCATGTCATTGAAGTGGCTCTTCTTCATAGCCCTAGTGGCGCTGCT
CAGCATTGGTACAGGTTCCCTGGCCCAGCCCAGCTGGCCCGCCACGCGGG
CCAGACCTGCTCTGGAGCAGCAGATGCGCCTCCAGCGCTTGAATGCCAAA
TACTATGCCATTCAGCAGGACGAAGAGGATGGCGATGACATCCTGGAGCA
CGAAGAGGACCTGGCCGACGCTAGTGAGGACGAGGAGGGAGATGATATCA
AGGATGGAGAGGAGGAGGAAGACGAAAAGGAGAACAAAAAACTGCATACC
AAAAAGGTGACCGCTAACATCACACCCGCCAAGCCGAAGACTGAAGTCAA
GCACAAGCTGGCGAAGGAGCAGGAGTCCATCGATGAACTGCAGGACCTTG
AGGAGCCCGAGGACGAGGCCGAGGAGGAGCTGGAGCAGGAAATCGACCTC
TCACGCGTTGAGCCACGCAATCGCCGACGCGGTGGCAGGCGGAACGGTAA
GGGCCGACGCAAGGGGCGTGGAAGCAGTAAACGCAGGAGGGGAAACCGCA
GGTGCGGCGGCAGGGGAAAGCGCGGCCGTCGTGGCCAACGGAAACGGACT
CCTTCGAAGCGCAGCGGCCACAAGCGGCGAACGGGCTCGAAAACCAAGCG
ACAGGGTCAGAAAAACAAAACAGCCGCCAACAAGGAAGCTGTCGCGCCAT
CAAACAAGGTGGCCTAACGCGCTGGACACTCCCACCTACAAATGCAGCTT
TAAAACTCATTAAAACAGCAGCGAAAATACTAATAAATAAACCACAACAA
AATCTTGCTTCCTTCCATCCGATGTACATATATATATATAGAAAAGGACA
CTTTCCAGGGTTCCATTTACAAAGCTAGCTTTTCCTAGAATATCTACTTC
CAAAGGATATTAGGCCGAAAAAGCTGTTAATCATAATATACTAAGGAAAA
AATTTCTGACAGTTTCATAAATGAACCTATTACAATGGTTGTGAACGTTG
AACAGATAGAATAATCACTGAACCTTGAAGTTTGTTTTCTATACAGTAAA
CTGAAACAAATTTATTCAATCAAATTCGGAAAAAAGTACAAGTTTAAGCC
CAGTAAATAATAGATTAATTTAAAACAAGTTTTGCACAGGATGTGTTTTG
CACCTCAACATAGTAGAAGAGCTTAACAGCAGCGAATTGCAAATATTGCT
GGATATATGCATCGGAATGAACTTTATTGTAGCATACTTTTCGGACCAAA
CACTCACGTATTTCGCCAGAGAAAGTTTTTATCGCGAACTCATGCACAGG
TGTGTGTGCGCCAGGTAGCAACCGCAAGTCATAAATTTCGCAGCTATTCC
GCTTTTGTTATAGTGCTTTTTTATGTATTTATGCTGGTATGCTCTCATGA
CCCCATAAATTATAGAGCGCTGCAATTTCGTTTAGCGGCTTTTGCACTGT
TCGAAATTAGTTTTACGCCTCTTTTTGATTTAGTTCGCACTGAGGTTTAG
TGCTTGCTCCACATAAAATCAAAATAAGGGATTCGCGCTGCAGTTGGTGA
GCCAGCTCCAACTCCAACTCCCAAATCTGACTGGGATGCACTCAATTTCA
GTTGGTTTTCCCTTCAGCTTATCTTTTGCCCGGCTGCCTTGGTCACTGGG
TTCGTTTACCTGACAGCGTCGTCATGCCAATCGTTTGTTTAAGGATGTTC
CGCTGAAAGTTCTTTGGAGTCAATTGGAATGTTTCACAGAGGATTCGAGG
AAACGAAGTTCTCGTTAAGTGTTTTTAAGGATTTTACTTAAAAGAAAGAA
GAGAATCTTTTGCTATTGAAATAGAAAAAAAAAAAAAAA

RH66388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14756-RA 819 CG14756-RA 1..819 1634..2452 4095 100 Plus
CG33087-RC 14423 CG33087-RC 1..223 822..600 1100 99.5 Minus
CG33087.a 14501 CG33087.a 168..283 715..600 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4091402..4094875 3474..1 17235 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8203851..8207339 3489..1 17400 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8205050..8208538 3489..1 17400 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 14:36:28 has no hits.

RH66388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:37:37 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4091402..4092941 1935..3474 99 == Minus
chr2R 4093001..4094875 1..1875 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:35 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..711 1657..2367 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:46 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..711 1657..2367 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:36:51 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..711 1657..2367 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:59:43 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..711 1657..2367 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:33 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..711 1657..2367 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:29:22 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..819 1634..2452 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:46 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..819 1634..2452 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:36:51 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..819 1634..2452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:59:44 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..819 1634..2452 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:33 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
CG14756-RA 1..819 1634..2452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8203866..8207339 1..3474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8203866..8207339 1..3474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:37:37 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8203866..8207339 1..3474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:36:51 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4091371..4094844 1..3474 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:08 Download gff for RH66388.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8205065..8208538 1..3474 99   Minus

RH66388.hyp Sequence

Translation from 1656 to 2366

> RH66388.hyp
MSLKWLFFIALVALLSIGTGSLAQPSWPATRARPALEQQMRLQRLNAKYY
AIQQDEEDGDDILEHEEDLADASEDEEGDDIKDGEEEEDEKENKKLHTKK
VTANITPAKPKTEVKHKLAKEQESIDELQDLEEPEDEAEEELEQEIDLSR
VEPRNRRRGGRRNGKGRRKGRGSSKRRRGNRRCGGRGKRGRRGQRKRTPS
KRSGHKRRTGSKTKRQGQKNKTAANKEAVAPSNKVA*

RH66388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14756-PA 236 CG14756-PA 1..236 1..236 1213 100 Plus

RH66388.pep Sequence

Translation from 1656 to 2366

> RH66388.pep
MSLKWLFFIALVALLSIGTGSLAQPSWPATRARPALEQQMRLQRLNAKYY
AIQQDEEDGDDILEHEEDLADASEDEEGDDIKDGEEEEDEKENKKLHTKK
VTANITPAKPKTEVKHKLAKEQESIDELQDLEEPEDEAEEELEQEIDLSR
VEPRNRRRGGRRNGKGRRKGRGSSKRRRGNRRCGGRGKRGRRGQRKRTPS
KRSGHKRRTGSKTKRQGQKNKTAANKEAVAPSNKVA*

RH66388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12604-PA 247 GF12604-PA 1..247 1..236 218 45.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10664-PA 234 GG10664-PA 1..234 1..236 605 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14756-PA 236 CG14756-PA 1..236 1..236 1213 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20710-PA 241 GM20710-PA 1..241 1..236 503 84.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10177-PA 241 GD10177-PA 1..241 1..236 491 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23219-PA 241 GE23219-PA 1..241 1..236 554 81.7 Plus