Clone RH66493 Report

Search the DGRC for RH66493

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:664
Well:93
Vector:pFlc-1
Associated Gene/Transcriptwash-RA
Protein status:RH66493.pep: gold
Preliminary Size:1534
Sequenced Size:1749

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13176 2002-01-01 Sim4 clustering to Release 2
CG13176 2002-05-23 Blastp of sequenced clone
CG13176 2003-01-01 Sim4 clustering to Release 3
CG13176 2008-04-29 Release 5.5 accounting
CG13176 2008-08-15 Release 5.9 accounting
CG13176 2008-12-18 5.12 accounting

Clone Sequence Records

RH66493.complete Sequence

1749 bp (1749 high quality bases) assembled on 2002-05-23

GenBank Submission: AY118440

> RH66493.complete
GACACTACCATGAACAGCAGTAAAATTGCAAATAAATATGTAATTATTTG
GCGATAGAAAAATGGAGGAGTCACCTTACCTGCACAGCCCCTACCAGGTG
GCCATTATAGCCACCGACCTGCACCACGAGGATACCATAATCCAAGCAGC
CCAGTCCCTGGACTGTCTACACAAAACCATAAACTCGATTTTCGAGCGAA
TCGATGCCCGCTTGGCGAGAAATGGTTCAAAGGTTGAGGACATAAACAAT
CGTGTGAAGCGCGCTCAGGCAAAAATCGATGCGCTCGTTGGCTCCAAGCG
GGCCATCCAGATCTTTGCACCCGCCCGCTTTCCGGCCAGCGACGTCCTGG
CACCGCTGCCAGCCACCTTTCCACAGGTGGCAGCCAATCCCCTAATGGAG
CAGCAAGTGGACCAGCTCCCGCAAGGGACGTACAGCAGTCACAGTGCCGC
GGACCAGAAGCCGGATGATGCGGACATCTTTTTCCATGTACGTGGCGATC
GGGAGCAGGAATCGCCACTGGTCGCCGAACGGAAGATAACCAATCGGACC
GCTGGCCTGGGCATCCTGCCTGCGGGTGGAGTGCGCTCCGTACCCTCGCT
CATGCGATTCAATACCAATGAGTTCGCCTACGGCGAGGATCTGAATGCCT
GGAAGCGATCCCTACCGCCGCAAAATGCTCGACGCGTTGCCAGTCAGTCC
ACTCAACTCACGGGAGAAAAGCAGCTCGCTCCGGCACCTCATTCGCTGGC
CCACGGCACCACCAAACTGGCCACTCCAGCTGGGGACCTGCGCTACAATC
CTGCTGCTTTGGCTGCACCCGCCATTGATGTTCCGCTGGACCTGCCCGAC
CTACCGGGCATAGCGAATGATCTGCAATATGAGCCAGTGGAGGAGCAAAC
ACCAATAGCGCCTTCCCAGCAGTTCGGTGATTTACCAGAGCTGCCGGATT
TGGGCCTCGAGGAGCAGGATATAATAGTGCAAGCCATCGCGGCACAGACG
CACATTCCGGGACCGGTGCGTAGGAAGAGTGTGGGACAATGTCCTTCGCC
AGTTACGGCGGCACCACCGCCTCCTCCTCCGCCACCACCGCCGCCTCCAC
CTCCTCCACCAGCGCAGACGAGCGCAATTCCATCACCGCCACCCTTTCCC
ACCAAAGGAGCTGTGAAACCGCTCTCCCCGTCGTTAGCAACACCTCTTAA
CATGCCGCAGCCGCCTCCAGCTACTGAAGATCCGCGATCTGAGCTTATGG
CCGCCATAAGAAACGCCGGTGGAGTGCATGGCGGTCGTCTGCGGTCGCCT
GCGGCTGCGCCGCTCGACGTGGTGGACAACAGTCGCTCCAAGGCGGGAGG
CGCTGTCACGGGGGATTTGATGGCAGACCTGCATAACAAGCTAATGCTGC
GACGCAAGGGAATTTCTGGGAGCCAGAATCCCGTGGAGGCCACTGCTGGC
AATCCCCTGATGCAGCAGCTCTCCCGCGTCATACCGCCGCCGGTGCAGCC
CCGCAAGGGATCTAAGTCGAGTGACGAACACTCCGAGGACGACGAGGATG
GGTGGAACTAGTGAATATTTAGCTTTAGTACCGGTTTAAGTGCCTTGGCT
GGCTTAAAGCACTAGCAACCTAGGTTCTCTAGCTTAAAGCATACAAATTT
CTAAAACGAATTCCAAATTCTGTGCCCAAGCGAGCATGCCAAATTAGGTC
AAAGTCAACCAGTTGAATAAAACTACATATTAGCAAAAAAAAAAAAAAA

RH66493.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
wash-RA 1734 wash-RA 2..1734 2..1734 8665 100 Plus
wash.a 1817 wash.a 85..1817 2..1734 8665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8067856..8069588 2..1734 8650 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12180641..12182378 2..1739 8675 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12181840..12183577 2..1739 8675 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 23:18:41 has no hits.

RH66493.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:19:16 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8067855..8069588 1..1734 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:38 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
CG13176-RA 1..1500 62..1561 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:48 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 1..1500 62..1561 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:24 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 1..1500 62..1561 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:29:26 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
CG13176-RA 1..1500 62..1561 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:01 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 1..1500 62..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:10:27 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
CG13176-RA 2..1734 2..1734 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:48 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 2..1734 2..1734 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:24 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 18..1751 1..1734 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:29:26 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
CG13176-RA 2..1734 2..1734 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:01 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
wash-RA 18..1751 1..1734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:16 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12180640..12182373 1..1734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:16 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12180640..12182373 1..1734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:16 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12180640..12182373 1..1734 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:24 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8068145..8069878 1..1734 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:03 Download gff for RH66493.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12181839..12183572 1..1734 99   Plus

RH66493.pep Sequence

Translation from 61 to 1560

> RH66493.pep
MEESPYLHSPYQVAIIATDLHHEDTIIQAAQSLDCLHKTINSIFERIDAR
LARNGSKVEDINNRVKRAQAKIDALVGSKRAIQIFAPARFPASDVLAPLP
ATFPQVAANPLMEQQVDQLPQGTYSSHSAADQKPDDADIFFHVRGDREQE
SPLVAERKITNRTAGLGILPAGGVRSVPSLMRFNTNEFAYGEDLNAWKRS
LPPQNARRVASQSTQLTGEKQLAPAPHSLAHGTTKLATPAGDLRYNPAAL
AAPAIDVPLDLPDLPGIANDLQYEPVEEQTPIAPSQQFGDLPELPDLGLE
EQDIIVQAIAAQTHIPGPVRRKSVGQCPSPVTAAPPPPPPPPPPPPPPPP
AQTSAIPSPPPFPTKGAVKPLSPSLATPLNMPQPPPATEDPRSELMAAIR
NAGGVHGGRLRSPAAAPLDVVDNSRSKAGGAVTGDLMADLHNKLMLRRKG
ISGSQNPVEATAGNPLMQQLSRVIPPPVQPRKGSKSSDEHSEDDEDGWN*

RH66493.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12825-PA 503 GF12825-PA 1..503 1..499 1735 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20253-PA 501 GG20253-PA 1..501 1..499 2269 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22791-PA 554 GH22791-PA 1..540 1..491 1280 58.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
wash-PB 499 CG13176-PB 1..499 1..499 2603 100 Plus
wash-PA 499 CG13176-PA 1..499 1..499 2603 100 Plus
WASp-PC 494 CG1520-PC 312..494 310..499 195 31.5 Plus
WASp-PD 527 CG1520-PD 345..527 310..499 195 31.5 Plus
WASp-PB 527 CG1520-PB 345..527 310..499 195 31.5 Plus
WASp-PA 527 CG1520-PA 345..527 310..499 195 31.5 Plus
BOD1-PC 1109 CG5514-PC 428..517 328..407 180 43.5 Plus
BOD1-PA 1109 CG5514-PA 428..517 328..407 180 43.5 Plus
BOD1-PD 1150 CG5514-PD 428..517 328..407 180 43.5 Plus
BOD1-PB 1150 CG5514-PB 428..517 328..407 180 43.5 Plus
BOD1-PE 1151 CG5514-PE 428..517 328..407 180 43.5 Plus
BOD1-PC 1109 CG5514-PC 406..464 328..386 158 47.5 Plus
BOD1-PA 1109 CG5514-PA 406..464 328..386 158 47.5 Plus
BOD1-PD 1150 CG5514-PD 406..464 328..386 158 47.5 Plus
BOD1-PB 1150 CG5514-PB 406..464 328..386 158 47.5 Plus
BOD1-PE 1151 CG5514-PE 406..464 328..386 158 47.5 Plus
capu-PG 932 CG3399-PG 364..432 328..391 157 43.5 Plus
capu-PB 1049 CG3399-PB 481..549 328..391 157 43.5 Plus
capu-PA 1059 CG3399-PA 491..559 328..391 157 43.5 Plus
capu-PJ 1089 CG3399-PJ 521..589 328..391 157 43.5 Plus
capu-PH 1107 CG3399-PH 539..607 328..391 157 43.5 Plus
capu-PD 1207 CG3399-PD 639..707 328..391 157 43.5 Plus
capu-PE 1280 CG3399-PE 712..780 328..391 157 43.5 Plus
capu-PI 1298 CG3399-PI 730..798 328..391 157 43.5 Plus
capu-PF 1361 CG3399-PF 793..861 328..391 157 43.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20587-PA 529 GI20587-PA 1..502 1..477 1333 61.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10805-PA 491 GL10805-PA 1..490 1..498 1592 70.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12097-PA 491 GA12097-PA 1..490 1..498 1586 70.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21340-PA 499 GM21340-PA 1..499 1..499 2378 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15403-PA 499 GD15403-PA 1..499 1..499 2363 95.8 Plus
Dsim\GD15401-PA 635 GD15401-PA 1..497 1..497 2309 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20767-PA 390 GJ20767-PA 1..332 1..315 1045 65.9 Plus
Dvir\GJ20768-PA 113 GJ20768-PA 1..112 396..498 368 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22172-PA 512 GK22172-PA 3..511 2..499 1581 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12412-PA 500 GE12412-PA 1..500 1..499 2294 93.2 Plus

RH66493.hyp Sequence

Translation from 61 to 1560

> RH66493.hyp
MEESPYLHSPYQVAIIATDLHHEDTIIQAAQSLDCLHKTINSIFERIDAR
LARNGSKVEDINNRVKRAQAKIDALVGSKRAIQIFAPARFPASDVLAPLP
ATFPQVAANPLMEQQVDQLPQGTYSSHSAADQKPDDADIFFHVRGDREQE
SPLVAERKITNRTAGLGILPAGGVRSVPSLMRFNTNEFAYGEDLNAWKRS
LPPQNARRVASQSTQLTGEKQLAPAPHSLAHGTTKLATPAGDLRYNPAAL
AAPAIDVPLDLPDLPGIANDLQYEPVEEQTPIAPSQQFGDLPELPDLGLE
EQDIIVQAIAAQTHIPGPVRRKSVGQCPSPVTAAPPPPPPPPPPPPPPPP
AQTSAIPSPPPFPTKGAVKPLSPSLATPLNMPQPPPATEDPRSELMAAIR
NAGGVHGGRLRSPAAAPLDVVDNSRSKAGGAVTGDLMADLHNKLMLRRKG
ISGSQNPVEATAGNPLMQQLSRVIPPPVQPRKGSKSSDEHSEDDEDGWN*

RH66493.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
wash-PB 499 CG13176-PB 1..499 1..499 2603 100 Plus
wash-PA 499 CG13176-PA 1..499 1..499 2603 100 Plus
WASp-PC 494 CG1520-PC 312..494 310..499 195 31.5 Plus
WASp-PD 527 CG1520-PD 345..527 310..499 195 31.5 Plus
WASp-PB 527 CG1520-PB 345..527 310..499 195 31.5 Plus