Clone RH67089 Report

Search the DGRC for RH67089

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:670
Well:89
Vector:pFlc-1
Associated Gene/TranscriptCG3011-RA
Protein status:RH67089.pep: gold
Preliminary Size:1861
Sequenced Size:2013

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3011 2002-01-01 Sim4 clustering to Release 2
CG3011 2003-01-01 Sim4 clustering to Release 3
CG3011 2004-01-20 Blastp of sequenced clone
CG3011 2008-04-29 Release 5.5 accounting
CG3011 2008-08-15 Release 5.9 accounting
CG3011 2008-12-18 5.12 accounting

Clone Sequence Records

RH67089.complete Sequence

2013 bp (2013 high quality bases) assembled on 2004-01-20

GenBank Submission: BT011432

> RH67089.complete
GAGCCTGGTAAATGTTGTTTACCAACGTAACGCGTGTTTTCGCTTCGTTG
TATTTTCGGTGTCGAATATTTTGGATGCTGGCCAAGAGATAGCGCAGCGA
TCGGGTCGGAACTCTTGGGCGGACTTATCACTGGGTCGGTCAGGGGTCAC
GGGTTATCGTTATCGCTTATCAGCCAGCGGCGGCGTCATCTCAGCGCCGG
CGACTCTTCTCACTTTGCGGCAGTTCCGATTCGAACGCAGCCGTTTACAA
AGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGCTTCGGTTTTGCC
TTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTTAACTTCGAGACT
GGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAAAAAACAACCATC
ACCAACGCCATTCTTACCGGCGATCAGACGATATTCGGACTCCAAGCAGA
GCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAAACCCCGCTGGCA
CAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGAGAAGGAGCGCCA
GCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCACCTCGGTGGCGG
TTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTACTCCGAGGGATAT
CCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGACCGCATAGAGCT
GCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGGACGATGAGAAGT
GGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCCAATCTGGCTGTC
TACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGGCCTGGATCTGCC
CGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCACCAAGAAGATAT
CGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAAGTGAACCCGGAG
ACGGGCATCATCGATTACGATAAGTTGGCGGAGGCGGCGAAGAATTTCCG
GCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCCGTCTGCTGGACT
ATGCGCGTTTCCGACAGATTTGCGATGATGTGGGCGCCTACCTGATGGCC
GACATGGCCCATGTGGCGGGCATTGTGGCCGCGGGATTGATACCATCGCC
GTTCGAATGGGCCGACATTGTGACCACCACCACGCACAAGACACTGCGAG
GTCCGCGCGCCGGCGTGATCTTCTTCCGCAAGGGCGTGCGCAGCACCAAG
GCCAATGGAGACAAGGTACTCTACGATCTGGAGGAGCGCATCAACCAGGC
GGTGTTTCCATCACTCCAGGGTGGTCCGCACAACAACGCCGTGGCTGGCA
TTGCCACCGCCTTCAAGCAGGCCAAGAGTCCCGAATTCAAGGCCTACCAG
ACGCAGGTGCTCAAGAATGCCAAGGCCCTGTGCGATGGCCTCATTTCGCG
AGGCTATCAGGTGGCCACCGGCGGCACCGACGTCCATTTGGTGCTGGTCG
ATGTGCGTAAGGCTGGCCTGACCGGCGCCAAGGCCGAGTACATCCTCGAG
GAGGTGGGCATCGCGTGCAACAAGAACACTGTGCCCGGCGACAAGTCCGC
CATGAATCCCTCCGGCATCCGGCTGGGCACACCGGCCCTGACCACTCGCG
GCCTTGCCGAGCAGGACATCGAGCAGGTGGTGGCCTTCATCGATGCTGCC
CTAAAGGTTGGCGTCCAGGCAGCCAAGCTGGCCGGCAGTCCCAAGATAAC
CGATTACCACAAGACGCTGGCCGAGAATGTGGAGCTCAAGGCCCAGGTGG
ACGAGATCCGCAAGAATGTGGCCCAGTTCAGCAGGAAATTCCCGCTGCCC
GGCCTGGAGACCCTGTAGGTGCTGCCTGCTTTGTTTGTCCCTTTTTCTTT
TGTTCGCCTTACGATTCACATCCTCGAAAAGTCCGCTTGTTAATATCATA
AGTGGGAATTAGTAGTTAAGCCATTAAACGCATTTCAGTTTACATACCAA
AAAAAAAAAAAAA

RH67089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3011-RA 2066 CG3011-RA 58..2055 2..1999 9975 99.9 Plus
CG3011-RB 1714 CG3011-RB 164..1703 460..1999 7685 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5805428..5806766 1998..660 6500 99 Minus
chrX 22417052 chrX 5808913..5809155 244..2 1215 100 Minus
chrX 22417052 chrX 5808625..5808841 461..245 1040 98.6 Minus
chrX 22417052 chrX 5806942..5807145 663..460 990 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5913066..5914405 1999..660 6685 99.9 Minus
X 23542271 X 5916551..5916793 244..2 1215 100 Minus
X 23542271 X 5916263..5916479 461..245 1085 100 Minus
X 23542271 X 5914579..5914782 663..460 1020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5921164..5922503 1999..660 6685 99.9 Minus
X 23527363 X 5924649..5924891 244..2 1215 100 Minus
X 23527363 X 5924361..5924577 461..245 1085 100 Minus
X 23527363 X 5922677..5922880 663..460 1020 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:58:33 has no hits.

RH67089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:59:28 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5805428..5806764 662..1998 99 <- Minus
chrX 5806944..5807143 462..661 99 <- Minus
chrX 5808625..5808841 245..461 98 <- Minus
chrX 5808913..5809155 1..244 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:45 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1614 255..1868 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:55 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1614 255..1868 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:24:37 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1614 255..1868 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:10:38 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1614 255..1868 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:02 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1614 255..1868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:34 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1997 2..1998 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:55 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1997 2..1998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:24:37 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 4..2001 1..1998 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:10:39 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 1..1997 2..1998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:02 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
CG3011-RA 4..2001 1..1998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:28 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
X 5913067..5914403 662..1998 99 <- Minus
X 5914581..5914780 462..661 100 <- Minus
X 5916263..5916479 245..461 100 <- Minus
X 5916551..5916793 1..244 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:28 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
X 5913067..5914403 662..1998 99 <- Minus
X 5914581..5914780 462..661 100 <- Minus
X 5916263..5916479 245..461 100 <- Minus
X 5916551..5916793 1..244 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:59:28 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
X 5913067..5914403 662..1998 99 <- Minus
X 5914581..5914780 462..661 100 <- Minus
X 5916263..5916479 245..461 100 <- Minus
X 5916551..5916793 1..244 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:24:37 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5807100..5808436 662..1998 99 <- Minus
arm_X 5808614..5808813 462..661 100 <- Minus
arm_X 5810296..5810512 245..461 100 <- Minus
arm_X 5810584..5810826 1..244 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:08 Download gff for RH67089.complete
Subject Subject Range Query Range Percent Splice Strand
X 5924361..5924577 245..461 100 <- Minus
X 5921165..5922501 662..1998 99 <- Minus
X 5922679..5922878 462..661 100 <- Minus
X 5924649..5924891 1..244 99   Minus

RH67089.pep Sequence

Translation from 254 to 1867

> RH67089.pep
MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP
TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR
EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL
AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD
GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP
QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF
EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV
FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG
YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM
NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD
YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETL*

RH67089.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22069-PA 533 GF22069-PA 1..533 1..537 2407 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18461-PA 535 GG18461-PA 1..535 1..537 2616 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24598-PA 470 GH24598-PA 1..470 68..537 2040 78.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Shmt-PA 537 CG3011-PA 1..537 1..537 2756 100 Plus
Shmt-PC 467 CG3011-PC 1..467 71..537 2402 100 Plus
Shmt-PB 467 CG3011-PB 1..467 71..537 2402 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15268-PA 467 GI15268-PA 1..467 71..537 2121 83.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14967-PA 539 GL14967-PA 1..539 1..537 2227 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15657-PA 539 GA15657-PA 1..539 1..537 2205 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12608-PA 454 GM12608-PA 1..249 1..246 1190 90 Plus
Dsec\GM12608-PA 454 GM12608-PA 228..454 311..537 1152 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16224-PA 382 GD16224-PA 1..377 1..376 1954 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14841-PA 537 GJ14841-PA 41..537 39..537 2166 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19730-PA 467 GK19730-PA 1..467 71..537 2093 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15684-PA 548 GE15684-PA 1..548 1..537 2642 92.2 Plus

RH67089.hyp Sequence

Translation from 254 to 1867

> RH67089.hyp
MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP
TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR
EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL
AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD
GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP
QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF
EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV
FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG
YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM
NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD
YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETL*

RH67089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3011-PA 537 CG3011-PA 1..537 1..537 2756 100 Plus
CG3011-PC 467 CG3011-PC 1..467 71..537 2402 100 Plus
CG3011-PB 467 CG3011-PB 1..467 71..537 2402 100 Plus