BDGP Sequence Production Resources |
Search the DGRC for RH67089
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 670 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3011-RA |
Protein status: | RH67089.pep: gold |
Preliminary Size: | 1861 |
Sequenced Size: | 2013 |
Gene | Date | Evidence |
---|---|---|
CG3011 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3011 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3011 | 2004-01-20 | Blastp of sequenced clone |
CG3011 | 2008-04-29 | Release 5.5 accounting |
CG3011 | 2008-08-15 | Release 5.9 accounting |
CG3011 | 2008-12-18 | 5.12 accounting |
2013 bp (2013 high quality bases) assembled on 2004-01-20
GenBank Submission: BT011432
> RH67089.complete GAGCCTGGTAAATGTTGTTTACCAACGTAACGCGTGTTTTCGCTTCGTTG TATTTTCGGTGTCGAATATTTTGGATGCTGGCCAAGAGATAGCGCAGCGA TCGGGTCGGAACTCTTGGGCGGACTTATCACTGGGTCGGTCAGGGGTCAC GGGTTATCGTTATCGCTTATCAGCCAGCGGCGGCGTCATCTCAGCGCCGG CGACTCTTCTCACTTTGCGGCAGTTCCGATTCGAACGCAGCCGTTTACAA AGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGCTTCGGTTTTGCC TTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTTAACTTCGAGACT GGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAAAAAACAACCATC ACCAACGCCATTCTTACCGGCGATCAGACGATATTCGGACTCCAAGCAGA GCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAAACCCCGCTGGCA CAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGAGAAGGAGCGCCA GCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCACCTCGGTGGCGG TTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTACTCCGAGGGATAT CCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGACCGCATAGAGCT GCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGGACGATGAGAAGT GGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCCAATCTGGCTGTC TACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGGCCTGGATCTGCC CGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCACCAAGAAGATAT CGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAAGTGAACCCGGAG ACGGGCATCATCGATTACGATAAGTTGGCGGAGGCGGCGAAGAATTTCCG GCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCCGTCTGCTGGACT ATGCGCGTTTCCGACAGATTTGCGATGATGTGGGCGCCTACCTGATGGCC GACATGGCCCATGTGGCGGGCATTGTGGCCGCGGGATTGATACCATCGCC GTTCGAATGGGCCGACATTGTGACCACCACCACGCACAAGACACTGCGAG GTCCGCGCGCCGGCGTGATCTTCTTCCGCAAGGGCGTGCGCAGCACCAAG GCCAATGGAGACAAGGTACTCTACGATCTGGAGGAGCGCATCAACCAGGC GGTGTTTCCATCACTCCAGGGTGGTCCGCACAACAACGCCGTGGCTGGCA TTGCCACCGCCTTCAAGCAGGCCAAGAGTCCCGAATTCAAGGCCTACCAG ACGCAGGTGCTCAAGAATGCCAAGGCCCTGTGCGATGGCCTCATTTCGCG AGGCTATCAGGTGGCCACCGGCGGCACCGACGTCCATTTGGTGCTGGTCG ATGTGCGTAAGGCTGGCCTGACCGGCGCCAAGGCCGAGTACATCCTCGAG GAGGTGGGCATCGCGTGCAACAAGAACACTGTGCCCGGCGACAAGTCCGC CATGAATCCCTCCGGCATCCGGCTGGGCACACCGGCCCTGACCACTCGCG GCCTTGCCGAGCAGGACATCGAGCAGGTGGTGGCCTTCATCGATGCTGCC CTAAAGGTTGGCGTCCAGGCAGCCAAGCTGGCCGGCAGTCCCAAGATAAC CGATTACCACAAGACGCTGGCCGAGAATGTGGAGCTCAAGGCCCAGGTGG ACGAGATCCGCAAGAATGTGGCCCAGTTCAGCAGGAAATTCCCGCTGCCC GGCCTGGAGACCCTGTAGGTGCTGCCTGCTTTGTTTGTCCCTTTTTCTTT TGTTCGCCTTACGATTCACATCCTCGAAAAGTCCGCTTGTTAATATCATA AGTGGGAATTAGTAGTTAAGCCATTAAACGCATTTCAGTTTACATACCAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5805428..5806766 | 1998..660 | 6500 | 99 | Minus |
chrX | 22417052 | chrX | 5808913..5809155 | 244..2 | 1215 | 100 | Minus |
chrX | 22417052 | chrX | 5808625..5808841 | 461..245 | 1040 | 98.6 | Minus |
chrX | 22417052 | chrX | 5806942..5807145 | 663..460 | 990 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 5913066..5914405 | 1999..660 | 6685 | 99.9 | Minus |
X | 23542271 | X | 5916551..5916793 | 244..2 | 1215 | 100 | Minus |
X | 23542271 | X | 5916263..5916479 | 461..245 | 1085 | 100 | Minus |
X | 23542271 | X | 5914579..5914782 | 663..460 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 5921164..5922503 | 1999..660 | 6685 | 99.9 | Minus |
X | 23527363 | X | 5924649..5924891 | 244..2 | 1215 | 100 | Minus |
X | 23527363 | X | 5924361..5924577 | 461..245 | 1085 | 100 | Minus |
X | 23527363 | X | 5922677..5922880 | 663..460 | 1020 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5805428..5806764 | 662..1998 | 99 | <- | Minus |
chrX | 5806944..5807143 | 462..661 | 99 | <- | Minus |
chrX | 5808625..5808841 | 245..461 | 98 | <- | Minus |
chrX | 5808913..5809155 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1614 | 255..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1614 | 255..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1614 | 255..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1614 | 255..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1614 | 255..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1997 | 2..1998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1997 | 2..1998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 4..2001 | 1..1998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 1..1997 | 2..1998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3011-RA | 4..2001 | 1..1998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5913067..5914403 | 662..1998 | 99 | <- | Minus |
X | 5914581..5914780 | 462..661 | 100 | <- | Minus |
X | 5916263..5916479 | 245..461 | 100 | <- | Minus |
X | 5916551..5916793 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5913067..5914403 | 662..1998 | 99 | <- | Minus |
X | 5914581..5914780 | 462..661 | 100 | <- | Minus |
X | 5916263..5916479 | 245..461 | 100 | <- | Minus |
X | 5916551..5916793 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5913067..5914403 | 662..1998 | 99 | <- | Minus |
X | 5914581..5914780 | 462..661 | 100 | <- | Minus |
X | 5916263..5916479 | 245..461 | 100 | <- | Minus |
X | 5916551..5916793 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5807100..5808436 | 662..1998 | 99 | <- | Minus |
arm_X | 5808614..5808813 | 462..661 | 100 | <- | Minus |
arm_X | 5810296..5810512 | 245..461 | 100 | <- | Minus |
arm_X | 5810584..5810826 | 1..244 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5924361..5924577 | 245..461 | 100 | <- | Minus |
X | 5921165..5922501 | 662..1998 | 99 | <- | Minus |
X | 5922679..5922878 | 462..661 | 100 | <- | Minus |
X | 5924649..5924891 | 1..244 | 99 | Minus |
Translation from 254 to 1867
> RH67089.pep MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22069-PA | 533 | GF22069-PA | 1..533 | 1..537 | 2407 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18461-PA | 535 | GG18461-PA | 1..535 | 1..537 | 2616 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24598-PA | 470 | GH24598-PA | 1..470 | 68..537 | 2040 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Shmt-PA | 537 | CG3011-PA | 1..537 | 1..537 | 2756 | 100 | Plus |
Shmt-PC | 467 | CG3011-PC | 1..467 | 71..537 | 2402 | 100 | Plus |
Shmt-PB | 467 | CG3011-PB | 1..467 | 71..537 | 2402 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15268-PA | 467 | GI15268-PA | 1..467 | 71..537 | 2121 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14967-PA | 539 | GL14967-PA | 1..539 | 1..537 | 2227 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15657-PA | 539 | GA15657-PA | 1..539 | 1..537 | 2205 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12608-PA | 454 | GM12608-PA | 1..249 | 1..246 | 1190 | 90 | Plus |
Dsec\GM12608-PA | 454 | GM12608-PA | 228..454 | 311..537 | 1152 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16224-PA | 382 | GD16224-PA | 1..377 | 1..376 | 1954 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14841-PA | 537 | GJ14841-PA | 41..537 | 39..537 | 2166 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19730-PA | 467 | GK19730-PA | 1..467 | 71..537 | 2093 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15684-PA | 548 | GE15684-PA | 1..548 | 1..537 | 2642 | 92.2 | Plus |
Translation from 254 to 1867
> RH67089.hyp MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3011-PA | 537 | CG3011-PA | 1..537 | 1..537 | 2756 | 100 | Plus |
CG3011-PC | 467 | CG3011-PC | 1..467 | 71..537 | 2402 | 100 | Plus |
CG3011-PB | 467 | CG3011-PB | 1..467 | 71..537 | 2402 | 100 | Plus |