BDGP Sequence Production Resources |
Search the DGRC for RH67853
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 678 |
Well: | 53 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dh31-RC |
Protein status: | RH67853.pep: gold |
Sequenced Size: | 1310 |
Gene | Date | Evidence |
---|---|---|
Dh31-RC | 2010-01-15 | Manual selection by Sue Celniker |
1310 bp assembled on 2010-02-12
GenBank Submission: BT120329.1
> RH67853.complete GACTGCGTTTCAGTCTCAAAGCGGTGCAGTCAGCAGCAGTAACGGTTAAT ATTTGGAATCGATCTAAACCAATCGAACTTTGATCGCAAATAAAGCGAAA GTGTTGTGTGCATTTGTGAAAAAGGGAGACAGCCGCACAAAGATGACAAA CCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTCTTCTGCCTCTTGGCCA TCTCGAGCATCGAGGCAGCTCCGATGCCCAGGTACCAATCCAATGGAGGA TACGGTGGCGCTGGCTATAACGAACTGGAGGAGGTGCCCGACGACCTACT CATGGAACTGATGACTCGCTTTGGACGCACCATCATACGGGCTCGAAACG ATCTGGAGAATTCCAAACGAACCGTGGACTTTGGCTTGGCCCGGGGATAT TCGGGTACCCAGGAGGCGAAACATCGCATGGGTCTGGCTGCAGCCAACTT TGCCGGAGGACCCGGTCGGAGGCGACGATCCGAGACCGATGTCTAAGGCG TCTGGATGAGACCGGGCTGCGAATCCTGTGAACGTTGAGGACGAACGTCA ACTTTTTCCACCTAAACTTGGCCCATACTTTGATACTTTCCTAGATCTTT CATTTGCATTACGTTTAATTGTTTGTTATTCATTGTACATAAATATTTAT TACGGAAATGTCCTCATGCAATTCATCAAAATTTTTTTTCCCTTCAAGAG TTATACGAAAATAATATTCAACAGATATCGAAATTATATATACCAAAGGC GAATAAAAGCGTTAAACTGTTGCTCCGAAAGAAAAAATGTTGAAAACAAT TTATGCAAATTTTCATCCCAGATTTAACTCAGTGATAATTGCTCGTTTTA ACCCGAAAATATGGAAGAAAGGTAAAGAGAGAAGGGAGAAATTTAAATAA ATATATCCTAAATATATATTCAAGTGTAAGCATAATCGCGCAAAAAATCT TTAACTAGGTATGTCTTACATAAACTAACAAAAATTTAAAAAAAAAGATC TACACAAATATACATACTTATATGCTAACAACACACTTTTGGCCCCCAAA ATGAAGCCAACAAAAACAAAAAAACCCCAACGAAACTGAAAGTTTATTTT ATCAATAGCCAACTTGGTCTCACGCGACTTTTAAGTATTGTAAATATAAA TTATTAAAGCACACGTACAACTAATGCGATACAAATATATTACGGAATTC TACTTGCATATATATTTAATAATTATTGTGTCTATGCTGCAAACATATAT CTTAACGTGAGTCGGACACGATCAAATAAAAGTCTACATTTTGAGAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dh31-RC | 1311 | Dh31-RC | 20..1311 | 4..1295 | 6445 | 99.9 | Plus |
Dh31-RA | 1295 | Dh31-RA | 7..1295 | 4..1295 | 6375 | 99.6 | Plus |
Dh31.a | 799 | Dh31.a | 4..357 | 4..360 | 1715 | 99.1 | Plus |
Dh31.a | 799 | Dh31.a | 522..799 | 361..638 | 1390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8490785..8491719 | 1295..361 | 4660 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 8491884..8492009 | 360..235 | 630 | 100 | Minus |
chr2L | 23010047 | chr2L | 8492661..8492770 | 234..125 | 535 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 8505542..8505614 | 126..54 | 365 | 100 | Minus |
chr2L | 23010047 | chr2L | 8505701..8505750 | 53..4 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8491866..8492802 | 1297..361 | 4670 | 99.9 | Minus |
2L | 23513712 | 2L | 8492967..8493092 | 360..235 | 630 | 100 | Minus |
2L | 23513712 | 2L | 8493744..8493853 | 234..125 | 550 | 100 | Minus |
2L | 23513712 | 2L | 8506634..8506706 | 126..54 | 365 | 100 | Minus |
2L | 23513712 | 2L | 8506793..8506842 | 53..4 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8491866..8492802 | 1297..361 | 4670 | 99.8 | Minus |
2L | 23513712 | 2L | 8492967..8493092 | 360..235 | 630 | 100 | Minus |
2L | 23513712 | 2L | 8493744..8493853 | 234..125 | 550 | 100 | Minus |
2L | 23513712 | 2L | 8506634..8506706 | 126..54 | 365 | 100 | Minus |
2L | 23513712 | 2L | 8506793..8506842 | 53..4 | 250 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 726..966 | 1136..903 | 128 | 55.1 | Minus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 709..848 | 887..1034 | 127 | 60.3 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 7343..7411 | 968..1038 | 115 | 69.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8490785..8491719 | 361..1295 | 99 | <- | Minus |
chr2L | 8491884..8492009 | 235..360 | 100 | <- | Minus |
chr2L | 8492661..8492769 | 126..234 | 99 | <- | Minus |
chr2L | 8505543..8505614 | 54..125 | 100 | <- | Minus |
chr2L | 8505701..8505753 | 1..53 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..354 | 143..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..354 | 143..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..354 | 143..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..354 | 143..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..1295 | 2..1295 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..1295 | 2..1295 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..1295 | 2..1295 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dh31-RC | 1..1295 | 2..1295 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 361..1295 | 99 | <- | Minus |
2L | 8492967..8493092 | 235..360 | 100 | <- | Minus |
2L | 8493744..8493852 | 126..234 | 100 | <- | Minus |
2L | 8506635..8506706 | 54..125 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..53 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 361..1295 | 99 | <- | Minus |
2L | 8492967..8493092 | 235..360 | 100 | <- | Minus |
2L | 8493744..8493852 | 126..234 | 100 | <- | Minus |
2L | 8506635..8506706 | 54..125 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..53 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 361..1295 | 99 | <- | Minus |
2L | 8492967..8493092 | 235..360 | 100 | <- | Minus |
2L | 8493744..8493852 | 126..234 | 100 | <- | Minus |
2L | 8506635..8506706 | 54..125 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..53 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8491868..8492802 | 361..1295 | 99 | <- | Minus |
arm_2L | 8492967..8493092 | 235..360 | 100 | <- | Minus |
arm_2L | 8493744..8493852 | 126..234 | 100 | <- | Minus |
arm_2L | 8506635..8506706 | 54..125 | 100 | <- | Minus |
arm_2L | 8506793..8506845 | 1..53 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8491868..8492802 | 361..1295 | 99 | <- | Minus |
2L | 8492967..8493092 | 235..360 | 100 | <- | Minus |
2L | 8493744..8493852 | 126..234 | 100 | <- | Minus |
2L | 8506635..8506706 | 54..125 | 100 | <- | Minus |
2L | 8506793..8506845 | 1..53 | 96 | Minus |
Translation from 142 to 495
> RH67853.hyp MTNRCACFALAFLLFCLLAISSIEAAPMPRYQSNGGYGGAGYNELEEVPD DLLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAA ANFAGGPGRRRRSETDV*
Translation from 142 to 495
> RH67853.pep MTNRCACFALAFLLFCLLAISSIEAAPMPRYQSNGGYGGAGYNELEEVPD DLLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAA ANFAGGPGRRRRSETDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14370-PA | 116 | GF14370-PA | 1..116 | 1..117 | 435 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24068-PA | 116 | GG24068-PA | 1..116 | 1..117 | 587 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10771-PA | 115 | GH10771-PA | 1..115 | 1..117 | 445 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dh31-PC | 117 | CG13094-PC | 1..117 | 1..117 | 607 | 100 | Plus |
Dh31-PA | 116 | CG13094-PA | 1..116 | 1..117 | 582 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17634-PA | 116 | GI17634-PA | 2..116 | 1..117 | 503 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25648-PA | 119 | GL25648-PA | 1..119 | 1..117 | 489 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12042-PA | 119 | GA12042-PA | 1..119 | 1..117 | 489 | 87.5 | Plus |
Dpse\GA22214-PA | 119 | GA22214-PA | 1..119 | 1..117 | 487 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12880-PA | 116 | GM12880-PA | 1..116 | 1..117 | 587 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22397-PA | 116 | GD22397-PA | 1..116 | 1..117 | 587 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18199-PA | 115 | GJ18199-PA | 1..115 | 1..117 | 487 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24837-PA | 120 | GK24837-PA | 1..120 | 1..117 | 472 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10938-PA | 116 | GE10938-PA | 1..116 | 1..117 | 587 | 98.3 | Plus |