Clone RH67967 Report

Search the DGRC for RH67967

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:679
Well:67
Vector:pFlc-1
Associated Gene/TranscriptCG12404-RA
Protein status:RH67967.pep: gold
Preliminary Size:910
Sequenced Size:1219

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12404 2002-01-01 Sim4 clustering to Release 2
CG12404 2002-03-28 Blastp of sequenced clone
CG12404 2003-01-01 Sim4 clustering to Release 3
CG12404 2008-04-29 Release 5.5 accounting
CG12404 2008-08-15 Release 5.9 accounting
CG12404 2008-12-18 5.12 accounting

Clone Sequence Records

RH67967.complete Sequence

1219 bp (1219 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094949

> RH67967.complete
GACATTTAGCTATTGGTCACCTCTAGTTGACGTGTTGTTAAATTAAATAT
CATTTTGTAAATATATGAATTGCGCTTAAATTAAAGTAATCATGTCTCAG
TTCGGCGGACCCAATGACTTTTACGGCTCCGCGCCCTCGGCCGATGCCAG
CTACAACTTCGATATGCCAGAATTTGGCCAGGAACTGAATTTCCAAACCT
TCGACAACACACAGGCCTCAGTGCCGCCGAACTACGATGCGTCCTATGCC
CAACCGCCGAGCCAAGGCTTGGGTGGCTTCTACGATCCCACGGCCTACAC
CGACACGAGCTACGGACAGGACAAGAGCGGAAAGTCAGCTGCTGGCGGAG
GAGCCGGCAACGAATTCGATGATGAGCCTCCACTGCTGGAAGAGCTGGGC
ATCAATCCGAATCACATCTTCCAAAAGACGCTCGCCGTGCTGAATCCGCT
GCGCGGTACCGACCAGCAAATCCTCCAGGATACTGACATGGCGGGTCCAC
TGGTCTTTTGCCTCACACTTGGCGGCTTCCTGCTGCTGAGCGGTAAGGTG
ACGTTCTCGTACATCTACGGCATCGGCGTAATGGGCTGCATCTTCTTCTA
CTGCCTGCTGTCCCTGATGGTCAGTCGGTCGCAGGTTACCTTCGGAGCAG
TGGCCTCCGTGCTGGGCTATTGTCTGCTGCCCATGGTGGTGCTGTCGGGC
ATCAACATTTTAATCACCATTCAGGGCACACTCGGCCTAATTGTGAGCGG
CATCTCCATATTCTGGTGCGCCATATCGGCCTCGAAACTGTTCGCCACCG
CCTTCTCCATGGACCATCAACAGCTGCTGATTGCCTATCCGTGTGCGGTG
CTCTATGGAGGATTTGCGTTGATTACCATTTACTAGGGCTACGAGATCCC
TGCTGCTATTCCACCACCACCACCACTACGCCCTCTGTTGTTGTGTTTGC
CTGGTTTTAATTGTCCTGCAAACACACACTCTAGCAGCACAATAAATACA
CACACAGATGTCAGGAGGAGAAGCAACAAGAGGAGCCAAACCCGAACCAC
ATATGGATATGTATATTTTTAAGAAAATAAGCGCCGATTGCGAATTTGTT
TTACACATTCTACTTTTTTTTCGCTGGCCAAGCTGCGCGTTTACTCAATA
CTTTTGTTGTCAGCCAATGTAATAAATTTGATTGCGAATAAAAAAATGGT
TAACAAAAAAAAAAAAAAA

RH67967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1307 CG12404-RA 5..1210 2..1207 6030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12992413..12992893 1204..724 2405 100 Minus
chr2L 23010047 chr2L 12998844..12999049 392..187 1030 100 Minus
chr2L 23010047 chr2L 12999111..12999296 187..2 930 100 Minus
chr2L 23010047 chr2L 12996126..12996312 724..538 920 99.5 Minus
chr2L 23010047 chr2L 12996483..12996595 538..426 565 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12993754..12994237 1207..724 2420 100 Minus
2L 23513712 2L 13000179..13000384 392..187 1030 100 Minus
2L 23513712 2L 12997461..12997647 724..538 935 100 Minus
2L 23513712 2L 13000446..13000631 187..2 930 100 Minus
2L 23513712 2L 12997813..12997925 538..426 565 100 Minus
2L 23513712 2L 12999727..12999763 427..391 185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12993754..12994237 1207..724 2420 100 Minus
2L 23513712 2L 13000179..13000384 392..187 1030 100 Minus
2L 23513712 2L 12997461..12997647 724..538 935 100 Minus
2L 23513712 2L 13000446..13000631 187..2 930 100 Minus
2L 23513712 2L 12997813..12997925 538..426 565 100 Minus
2L 23513712 2L 12999727..12999763 427..391 185 100 Minus
Blast to na_te.dros performed 2019-03-16 15:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 599..557 116 74.4 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4201..4235 1095..1061 112 80 Minus

RH67967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:50:30 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12992413..12992893 724..1204 100 <- Minus
chr2L 12996127..12996311 539..723 99 <- Minus
chr2L 12996483..12996593 428..538 100 <- Minus
chr2L 12998392..12998426 393..427 97 <- Minus
chr2L 12998844..12999049 187..392 100 <- Minus
chr2L 12999112..12999296 1..186 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:55 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 92..886 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:29 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 92..886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:19:39 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 92..886 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:11 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 92..886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:06 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 92..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:27 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..1203 2..1204 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:29 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..1203 2..1204 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:39 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 4..1207 1..1204 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:11 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..1203 2..1204 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:06 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 4..1207 1..1204 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:30 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13000447..13000631 1..186 99   Minus
2L 12997462..12997646 539..723 100 <- Minus
2L 12997813..12997923 428..538 100 <- Minus
2L 12999727..12999761 393..427 100 <- Minus
2L 13000179..13000384 187..392 100 <- Minus
2L 12993757..12994237 724..1204 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:30 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13000447..13000631 1..186 99   Minus
2L 12997462..12997646 539..723 100 <- Minus
2L 12997813..12997923 428..538 100 <- Minus
2L 12999727..12999761 393..427 100 <- Minus
2L 13000179..13000384 187..392 100 <- Minus
2L 12993757..12994237 724..1204 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:30 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13000447..13000631 1..186 99   Minus
2L 12997462..12997646 539..723 100 <- Minus
2L 12997813..12997923 428..538 100 <- Minus
2L 12999727..12999761 393..427 100 <- Minus
2L 13000179..13000384 187..392 100 <- Minus
2L 12993757..12994237 724..1204 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:39 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13000447..13000631 1..186 99   Minus
arm_2L 13000179..13000384 187..392 100 <- Minus
arm_2L 12993757..12994237 724..1204 100 <- Minus
arm_2L 12997462..12997646 539..723 100 <- Minus
arm_2L 12997813..12997923 428..538 100 <- Minus
arm_2L 12999727..12999761 393..427 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:31:55 Download gff for RH67967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13000447..13000631 1..186 99   Minus
2L 13000179..13000384 187..392 100 <- Minus
2L 12993757..12994237 724..1204 100 <- Minus
2L 12997462..12997646 539..723 100 <- Minus
2L 12997813..12997923 428..538 100 <- Minus
2L 12999727..12999761 393..427 100 <- Minus

RH67967.hyp Sequence

Translation from 91 to 885

> RH67967.hyp
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIY*

RH67967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 264 CG12404-PA 1..264 1..264 1384 100 Plus

RH67967.pep Sequence

Translation from 91 to 885

> RH67967.pep
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIY*

RH67967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15652-PA 263 GF15652-PA 1..263 1..264 1241 93.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10234-PA 264 GG10234-PA 1..264 1..264 1328 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10351-PA 266 GH10351-PA 1..266 1..264 1190 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 264 CG12404-PA 1..264 1..264 1384 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21248-PA 267 GI21248-PA 1..267 1..264 1258 91.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24784-PA 261 GL24784-PA 1..261 1..264 1240 92.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11613-PA 261 GA11613-PA 1..261 1..264 1240 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25954-PA 264 GM25954-PA 1..264 1..264 1354 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22094-PA 264 GD22094-PA 1..264 1..264 1359 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11078-PA 266 GJ11078-PA 1..266 1..264 1214 89.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14816-PA 258 GK14816-PA 1..258 1..264 1180 88.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11989-PA 264 GE11989-PA 1..264 1..264 1339 97.7 Plus