BDGP Sequence Production Resources |
Search the DGRC for RH67967
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 679 |
Well: | 67 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12404-RA |
Protein status: | RH67967.pep: gold |
Preliminary Size: | 910 |
Sequenced Size: | 1219 |
Gene | Date | Evidence |
---|---|---|
CG12404 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12404 | 2002-03-28 | Blastp of sequenced clone |
CG12404 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12404 | 2008-04-29 | Release 5.5 accounting |
CG12404 | 2008-08-15 | Release 5.9 accounting |
CG12404 | 2008-12-18 | 5.12 accounting |
1219 bp (1219 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094949
> RH67967.complete GACATTTAGCTATTGGTCACCTCTAGTTGACGTGTTGTTAAATTAAATAT CATTTTGTAAATATATGAATTGCGCTTAAATTAAAGTAATCATGTCTCAG TTCGGCGGACCCAATGACTTTTACGGCTCCGCGCCCTCGGCCGATGCCAG CTACAACTTCGATATGCCAGAATTTGGCCAGGAACTGAATTTCCAAACCT TCGACAACACACAGGCCTCAGTGCCGCCGAACTACGATGCGTCCTATGCC CAACCGCCGAGCCAAGGCTTGGGTGGCTTCTACGATCCCACGGCCTACAC CGACACGAGCTACGGACAGGACAAGAGCGGAAAGTCAGCTGCTGGCGGAG GAGCCGGCAACGAATTCGATGATGAGCCTCCACTGCTGGAAGAGCTGGGC ATCAATCCGAATCACATCTTCCAAAAGACGCTCGCCGTGCTGAATCCGCT GCGCGGTACCGACCAGCAAATCCTCCAGGATACTGACATGGCGGGTCCAC TGGTCTTTTGCCTCACACTTGGCGGCTTCCTGCTGCTGAGCGGTAAGGTG ACGTTCTCGTACATCTACGGCATCGGCGTAATGGGCTGCATCTTCTTCTA CTGCCTGCTGTCCCTGATGGTCAGTCGGTCGCAGGTTACCTTCGGAGCAG TGGCCTCCGTGCTGGGCTATTGTCTGCTGCCCATGGTGGTGCTGTCGGGC ATCAACATTTTAATCACCATTCAGGGCACACTCGGCCTAATTGTGAGCGG CATCTCCATATTCTGGTGCGCCATATCGGCCTCGAAACTGTTCGCCACCG CCTTCTCCATGGACCATCAACAGCTGCTGATTGCCTATCCGTGTGCGGTG CTCTATGGAGGATTTGCGTTGATTACCATTTACTAGGGCTACGAGATCCC TGCTGCTATTCCACCACCACCACCACTACGCCCTCTGTTGTTGTGTTTGC CTGGTTTTAATTGTCCTGCAAACACACACTCTAGCAGCACAATAAATACA CACACAGATGTCAGGAGGAGAAGCAACAAGAGGAGCCAAACCCGAACCAC ATATGGATATGTATATTTTTAAGAAAATAAGCGCCGATTGCGAATTTGTT TTACACATTCTACTTTTTTTTCGCTGGCCAAGCTGCGCGTTTACTCAATA CTTTTGTTGTCAGCCAATGTAATAAATTTGATTGCGAATAAAAAAATGGT TAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12404-RA | 1307 | CG12404-RA | 5..1210 | 2..1207 | 6030 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 12992413..12992893 | 1204..724 | 2405 | 100 | Minus |
chr2L | 23010047 | chr2L | 12998844..12999049 | 392..187 | 1030 | 100 | Minus |
chr2L | 23010047 | chr2L | 12999111..12999296 | 187..2 | 930 | 100 | Minus |
chr2L | 23010047 | chr2L | 12996126..12996312 | 724..538 | 920 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 12996483..12996595 | 538..426 | 565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12993754..12994237 | 1207..724 | 2420 | 100 | Minus |
2L | 23513712 | 2L | 13000179..13000384 | 392..187 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997461..12997647 | 724..538 | 935 | 100 | Minus |
2L | 23513712 | 2L | 13000446..13000631 | 187..2 | 930 | 100 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 538..426 | 565 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 427..391 | 185 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12993754..12994237 | 1207..724 | 2420 | 100 | Minus |
2L | 23513712 | 2L | 13000179..13000384 | 392..187 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997461..12997647 | 724..538 | 935 | 100 | Minus |
2L | 23513712 | 2L | 13000446..13000631 | 187..2 | 930 | 100 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 538..426 | 565 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 427..391 | 185 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 599..557 | 116 | 74.4 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4201..4235 | 1095..1061 | 112 | 80 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12992413..12992893 | 724..1204 | 100 | <- | Minus |
chr2L | 12996127..12996311 | 539..723 | 99 | <- | Minus |
chr2L | 12996483..12996593 | 428..538 | 100 | <- | Minus |
chr2L | 12998392..12998426 | 393..427 | 97 | <- | Minus |
chr2L | 12998844..12999049 | 187..392 | 100 | <- | Minus |
chr2L | 12999112..12999296 | 1..186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..795 | 92..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..795 | 92..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..795 | 92..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..795 | 92..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..795 | 92..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..1203 | 2..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..1203 | 2..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 4..1207 | 1..1204 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 1..1203 | 2..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12404-RA | 4..1207 | 1..1204 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13000447..13000631 | 1..186 | 99 | Minus | |
2L | 12997462..12997646 | 539..723 | 100 | <- | Minus |
2L | 12997813..12997923 | 428..538 | 100 | <- | Minus |
2L | 12999727..12999761 | 393..427 | 100 | <- | Minus |
2L | 13000179..13000384 | 187..392 | 100 | <- | Minus |
2L | 12993757..12994237 | 724..1204 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13000447..13000631 | 1..186 | 99 | Minus | |
2L | 12997462..12997646 | 539..723 | 100 | <- | Minus |
2L | 12997813..12997923 | 428..538 | 100 | <- | Minus |
2L | 12999727..12999761 | 393..427 | 100 | <- | Minus |
2L | 13000179..13000384 | 187..392 | 100 | <- | Minus |
2L | 12993757..12994237 | 724..1204 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13000447..13000631 | 1..186 | 99 | Minus | |
2L | 12997462..12997646 | 539..723 | 100 | <- | Minus |
2L | 12997813..12997923 | 428..538 | 100 | <- | Minus |
2L | 12999727..12999761 | 393..427 | 100 | <- | Minus |
2L | 13000179..13000384 | 187..392 | 100 | <- | Minus |
2L | 12993757..12994237 | 724..1204 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13000447..13000631 | 1..186 | 99 | Minus | |
arm_2L | 13000179..13000384 | 187..392 | 100 | <- | Minus |
arm_2L | 12993757..12994237 | 724..1204 | 100 | <- | Minus |
arm_2L | 12997462..12997646 | 539..723 | 100 | <- | Minus |
arm_2L | 12997813..12997923 | 428..538 | 100 | <- | Minus |
arm_2L | 12999727..12999761 | 393..427 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13000447..13000631 | 1..186 | 99 | Minus | |
2L | 13000179..13000384 | 187..392 | 100 | <- | Minus |
2L | 12993757..12994237 | 724..1204 | 100 | <- | Minus |
2L | 12997462..12997646 | 539..723 | 100 | <- | Minus |
2L | 12997813..12997923 | 428..538 | 100 | <- | Minus |
2L | 12999727..12999761 | 393..427 | 100 | <- | Minus |
Translation from 91 to 885
> RH67967.hyp MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP CAVLYGGFALITIY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12404-PA | 264 | CG12404-PA | 1..264 | 1..264 | 1384 | 100 | Plus |
Translation from 91 to 885
> RH67967.pep MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP CAVLYGGFALITIY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15652-PA | 263 | GF15652-PA | 1..263 | 1..264 | 1241 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10234-PA | 264 | GG10234-PA | 1..264 | 1..264 | 1328 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10351-PA | 266 | GH10351-PA | 1..266 | 1..264 | 1190 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12404-PA | 264 | CG12404-PA | 1..264 | 1..264 | 1384 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21248-PA | 267 | GI21248-PA | 1..267 | 1..264 | 1258 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24784-PA | 261 | GL24784-PA | 1..261 | 1..264 | 1240 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11613-PA | 261 | GA11613-PA | 1..261 | 1..264 | 1240 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25954-PA | 264 | GM25954-PA | 1..264 | 1..264 | 1354 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22094-PA | 264 | GD22094-PA | 1..264 | 1..264 | 1359 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11078-PA | 266 | GJ11078-PA | 1..266 | 1..264 | 1214 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14816-PA | 258 | GK14816-PA | 1..258 | 1..264 | 1180 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11989-PA | 264 | GE11989-PA | 1..264 | 1..264 | 1339 | 97.7 | Plus |