Clone RH68195 Report

Search the DGRC for RH68195

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:681
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG4908-RA
Protein status:RH68195.pep: gold
Preliminary Size:1328
Sequenced Size:1717

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4908 2002-01-01 Sim4 clustering to Release 2
CG4908 2002-02-22 Blastp of sequenced clone
CG4908 2003-01-01 Sim4 clustering to Release 3
CG4908 2008-04-29 Release 5.5 accounting
CG4908 2008-08-15 Release 5.9 accounting
CG4908 2008-12-18 5.12 accounting

Clone Sequence Records

RH68195.complete Sequence

1717 bp (1717 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089691

> RH68195.complete
GACAGTTCGGTCACAATGTTGGATTAAAAATATTTATCAATGCCGGTATT
GAAACATTTCTACTATAAAAAAATGTTGATTGCTTTTAGTGAATGACAAG
TTATCCTCTAAGATGGTTTTTATGCCAAATAAAATGTGCCACTTCAGCGG
CAACTTGTATATTTATTTGCTCACACCTAAATTACAATTAATTACATAAC
GAGAGTGATGGCAAATGGTTGATTTAAATAATAAAATTACATGGTTTTCT
CATGAGAAAATAAAATTGTTGGTGCCTTTGCTGAAGCGCACGTAAACAGT
ATATGTTAGACTTCAGTTTTATTTGTTTAAAAAGTTGCTTCGAAAAGATG
TACCATTGTTTACAGGAGGAACCCATGTTTTGGATGATAGATTAAGCAAC
AGACAAGATGACTTTGCCCGATCTTGTAGCTGGACTTTCGTCAAATCCCT
ACTTTGGTGCCGGTTTTGGACTATTTGGTGTGGGCGCCGCTGCTGCCATA
TTGCGCAAGGGCCTCCAGGGCGGAGTGATACTGTTCCGGCGGCACTGCAT
GATTACCCTGGAGGTGCCGTGTCGGGACAAATCCTATCAGTGGCTGTTAA
AATGGATTACGATCAGAGGAGCGCGAAAAACGCAACACTTGAGCGTGGAG
ACAAACTTTGTGCAGAACGACAATGGCACAATCAAAACCAGCTATGACTT
CATACCCAGCATAGGCAAGCATCTGTTCCAGTACAAGGGCAATTGGATTC
AGGTGGAGCGGACCAGGGAACAACAGACATTGGACCTTCACATGGGTGTT
CCTTGGGAGACAGTGACGCTTACAGCGTTTGGTAACAATAAAGGTATATA
TTTCGATATCCTCGAAGAGGCTAGGCAGCTGGCTCTGGAGGCCACAGAGG
GCAAAACCGTGCTGTACACAGCGATGGGTGCGGAATGGAGACCCTTCGGA
CATCCGCGCAGAAGGCGTCCCACTGGATCGGTGGTGCTGGATCGCGGAAC
TTCGCAACGAATCATTGCCGACTGCCAGGACTTCATTAAGAGCTCTCTGT
GGTATACGCAACGTGGAATCCCCTACCGAAGAGGCTACCTTCTGTACGGG
CCACCTGGTTGTGGCAAGTCTAGCTTTATAACCGCCCTGGCGGGCGAACT
GGAGTACAGTGTCTGCCTGCTAAACCTATCCGAAAGAGGCCTCACCGATG
ATCGACTCAATCATCTCCTGAATGTTGCGCCAGAGCAGAGTATCATTCTG
CTGGAGGACATCGACGCAGCATTCGTCTCGCGCGAAGCTACTCCGCAGCA
GAAATCCGCCTTTGACGGTCTCAACAGGATAACGTTCAGTGGACTCCTAA
ATTGCTTGGACGGTGTGGGCTCCACGGAGGCCAGAATTGTCTTCATGACA
ACAAACTACATTGACCGCCTCGATCCCGCCTTAGTTCGTCCTGGTAGAAT
CGATTTAAAGGAATACATTGGCTATTGTACGCAATATCAGTTGGAGGAGA
TGTTCAAGAACTTCTTCGCCAGCAGTGACACCACAAAAGCCGAGGAGTTC
GGAAAACGAGTGAATTCCTTTGGACGCTCCGCTAGTCCGGCGCAAATTCA
AGGCTTTTTCATGAAGCACAAACTGTCCTCGCCGCAAACTGTTATTGATT
CTTGTGAAGATATCTGGGAAAATGTTTTAGATCATAATAAAAAGATTAAT
TAAAAAAAAAAAAAAAA

RH68195.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-RB 1704 CG4908-RB 2..1701 2..1701 8470 99.8 Plus
CG4908-RA 1448 CG4908-RA 52..1351 402..1701 6485 99.9 Plus
CG4908-RA 1448 CG4908-RA 9..52 2..45 205 97.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10221989..10223290 400..1701 6495 99.9 Plus
chr2L 23010047 chr2L 10221510..10221910 2..402 1990 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10223138..10224439 400..1701 6495 99.9 Plus
2L 23513712 2L 10222659..10223059 2..402 1990 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10223138..10224439 400..1701 6495 99.9 Plus
2L 23513712 2L 10222659..10223059 2..402 1990 99.7 Plus
Blast to na_te.dros performed 2019-03-16 23:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 2202..2293 923..1018 129 61.5 Plus

RH68195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:48:21 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10221509..10221910 1..402 99 -> Plus
chr2L 10221992..10223290 403..1701 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:52:58 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RA 1..1294 408..1701 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:36:29 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RA 1..1294 408..1701 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:24:59 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 1..1296 408..1703 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:45 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RA 1..1294 408..1701 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:01 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 1..1296 408..1703 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:56 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 2..1701 2..1701 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:36:29 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 2..1701 2..1701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:24:59 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 2..1702 1..1701 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:46 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 2..1701 2..1701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:01 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4908-RB 2..1702 1..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:21 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10222658..10223059 1..402 99 -> Plus
2L 10223141..10224439 403..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:21 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10222658..10223059 1..402 99 -> Plus
2L 10223141..10224439 403..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:21 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10222658..10223059 1..402 99 -> Plus
2L 10223141..10224439 403..1701 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:24:59 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10222658..10223059 1..402 99 -> Plus
arm_2L 10223141..10224439 403..1701 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:45 Download gff for RH68195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10222658..10223059 1..402 99 -> Plus
2L 10223141..10224439 403..1701 99   Plus

RH68195.pep Sequence

Translation from 407 to 1702

> RH68195.pep
MTLPDLVAGLSSNPYFGAGFGLFGVGAAAAILRKGLQGGVILFRRHCMIT
LEVPCRDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIP
SIGKHLFQYKGNWIQVERTREQQTLDLHMGVPWETVTLTAFGNNKGIYFD
ILEEARQLALEATEGKTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQ
RIIADCQDFIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGELEY
SVCLLNLSERGLTDDRLNHLLNVAPEQSIILLEDIDAAFVSREATPQQKS
AFDGLNRITFSGLLNCLDGVGSTEARIVFMTTNYIDRLDPALVRPGRIDL
KEYIGYCTQYQLEEMFKNFFASSDTTKAEEFGKRVNSFGRSASPAQIQGF
FMKHKLSSPQTVIDSCEDIWENVLDHNKKIN*

RH68195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15752-PA 253 GF15752-PA 1..252 1..252 1305 94.4 Plus
Dana\GF21370-PA 823 GF21370-PA 360..545 208..385 213 32.3 Plus
Dana\GF21725-PA 405 GF21725-PA 168..313 210..351 186 38.3 Plus
Dana\GF20295-PA 413 GF20295-PA 185..325 215..351 182 38.2 Plus
Dana\GF23193-PA 405 GF23193-PA 177..317 215..351 181 38.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10093-PA 431 GG10093-PA 1..431 1..431 2287 98.1 Plus
Dere\GG18614-PA 822 GG18614-PA 361..532 208..372 212 33.1 Plus
Dere\GG19719-PA 405 GG19719-PA 168..313 210..351 186 38.3 Plus
Dere\GG18392-PA 410 GG18392-PA 182..322 215..351 182 38.2 Plus
Dere\GG12390-PA 439 GG12390-PA 209..349 215..351 180 38.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13361-PA 422 GH13361-PA 1..422 1..422 2007 85.8 Plus
Dgri\GH12676-PA 825 GH12676-PA 370..541 208..372 208 32.6 Plus
Dgri\GH11847-PA 405 GH11847-PA 168..313 210..351 186 38.3 Plus
Dgri\GH14249-PA 392 GH14249-PA 164..304 215..351 182 37.5 Plus
Dgri\GH19692-PA 439 GH19692-PA 209..349 215..351 180 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-PA 431 CG4908-PA 1..431 1..431 2270 100 Plus
CG4908-PB 431 CG4908-PB 1..431 1..431 2270 100 Plus
Spg7-PC 819 CG2658-PC 358..529 208..372 200 33.1 Plus
Spg7-PA 819 CG2658-PA 358..529 208..372 200 33.1 Plus
Rpt6-PA 405 CG1489-PA 178..313 220..351 176 40.3 Plus
Rpt3R-PD 405 CG9475-PD 178..317 216..351 176 38.5 Plus
Rpt3R-PC 405 CG9475-PC 178..317 216..351 176 38.5 Plus
Rpt3-PB 413 CG16916-PB 186..325 216..351 175 37.8 Plus
Rpt3-PA 413 CG16916-PA 186..325 216..351 175 37.8 Plus
Rpt2-PB 439 CG5289-PB 209..349 215..351 174 37.7 Plus
Rpt2-PA 439 CG5289-PA 209..349 215..351 174 37.7 Plus
Rpt6R-PA 399 CG2241-PA 173..307 220..351 164 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18626-PA 422 GI18626-PA 1..422 1..422 1958 83.6 Plus
Dmoj\GI16253-PA 839 GI16253-PA 382..552 208..371 206 32.2 Plus
Dmoj\GI24873-PA 392 GI24873-PA 164..304 215..351 186 38.9 Plus
Dmoj\GI14329-PA 405 GI14329-PA 168..313 210..351 185 38.3 Plus
Dmoj\GI21710-PA 393 GI21710-PA 165..305 215..351 182 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19152-PA 431 GL19152-PA 1..431 1..428 2005 84.7 Plus
Dper\GL18240-PA 822 GL18240-PA 363..534 208..372 200 32 Plus
Dper\GL16409-PA 269 GL16409-PA 32..177 210..351 187 38.3 Plus
Dper\GL27100-PA 413 GL27100-PA 185..325 215..351 181 38.2 Plus
Dper\GL23235-PA 386 GL23235-PA 158..298 215..351 181 38.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18516-PA 431 GA18516-PA 1..431 1..428 2005 84.7 Plus
Dpse\GA15413-PA 822 GA15413-PA 363..534 208..372 202 32 Plus
Dpse\GA13327-PA 405 GA13327-PA 168..313 210..351 186 38.3 Plus
Dpse\GA14216-PA 413 GA14216-PA 185..325 215..351 181 38.2 Plus
Dpse\GA21817-PB 401 GA21817-PB 173..313 215..351 181 38.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18016-PA 431 GM18016-PA 1..431 1..431 2321 100 Plus
Dsec\GM23074-PA 405 GM23074-PA 168..313 210..351 186 38.3 Plus
Dsec\GM11458-PA 858 GM11458-PA 630..770 215..351 184 38.2 Plus
Dsec\GM23527-PA 439 GM23527-PA 209..349 215..351 181 38.4 Plus
Dsec\GM26216-PA 389 GM26216-PA 161..301 215..351 179 38.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23665-PA 431 GD23665-PA 1..431 1..431 2312 99.3 Plus
Dsim\GD17527-PA 405 GD17527-PA 168..313 210..351 186 38.3 Plus
Dsim\GD20762-PA 389 GD20762-PA 161..301 215..351 181 38.9 Plus
Dsim\GD18337-PA 439 GD18337-PA 209..349 215..351 181 38.4 Plus
Dsim\GD16958-PA 400 GD16958-PA 164..308 210..351 174 36.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17120-PA 422 GJ17120-PA 1..422 1..422 1953 82.9 Plus
Dvir\GJ16718-PA 831 GJ16718-PA 377..554 208..378 210 32 Plus
Dvir\GJ19383-PA 405 GJ19383-PA 168..313 210..351 186 38.3 Plus
Dvir\GJ24517-PA 384 GJ24517-PA 156..296 215..351 184 38.2 Plus
Dvir\GJ15572-PA 408 GJ15572-PA 180..320 215..351 182 38.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19973-PA 823 GK19973-PA 368..565 208..397 212 31.3 Plus
Dwil\GK16292-PA 405 GK16292-PA 168..313 210..351 186 38.3 Plus
Dwil\GK16371-PA 413 GK16371-PA 185..325 215..351 182 38.2 Plus
Dwil\GK11127-PA 389 GK11127-PA 161..301 215..351 180 38.2 Plus
Dwil\GK11948-PA 439 GK11948-PA 209..349 215..351 180 38.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18907-PA 431 GE18907-PA 1..431 1..431 2298 98.8 Plus
Dyak\GE16929-PA 822 GE16929-PA 361..532 208..372 213 33.1 Plus
Dyak\GE17917-PA 405 GE17917-PA 168..313 210..351 186 38.3 Plus
Dyak\GE15910-PA 413 GE15910-PA 185..325 215..351 182 38.2 Plus
Dyak\GE10845-PA 439 GE10845-PA 209..349 215..351 180 38.4 Plus

RH68195.hyp Sequence

Translation from 407 to 1700

> RH68195.hyp
MTLPDLVAGLSSNPYFGAGFGLFGVGAAAAILRKGLQGGVILFRRHCMIT
LEVPCRDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIP
SIGKHLFQYKGNWIQVERTREQQTLDLHMGVPWETVTLTAFGNNKGIYFD
ILEEARQLALEATEGKTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQ
RIIADCQDFIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGELEY
SVCLLNLSERGLTDDRLNHLLNVAPEQSIILLEDIDAAFVSREATPQQKS
AFDGLNRITFSGLLNCLDGVGSTEARIVFMTTNYIDRLDPALVRPGRIDL
KEYIGYCTQYQLEEMFKNFFASSDTTKAEEFGKRVNSFGRSASPAQIQGF
FMKHKLSSPQTVIDSCEDIWENVLDHNKKIN

RH68195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4908-PA 431 CG4908-PA 1..431 1..431 2270 100 Plus
CG4908-PB 431 CG4908-PB 1..431 1..431 2270 100 Plus
CG2658-PC 819 CG2658-PC 358..529 208..372 200 33.1 Plus
CG2658-PA 819 CG2658-PA 358..529 208..372 200 33.1 Plus
Rpt6-PA 405 CG1489-PA 178..313 220..351 176 40.3 Plus