Clone RH68403 Report

Search the DGRC for RH68403

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:684
Well:3
Vector:pFlc-1
Associated Gene/TranscriptScamp-RA
Protein status:RH68403.pep: gold
Preliminary Size:1447
Sequenced Size:2415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9195 2002-01-01 Sim4 clustering to Release 2
CG9195 2002-01-11 Blastp of sequenced clone
CG9195 2003-01-01 Sim4 clustering to Release 3
Scamp 2008-04-29 Release 5.5 accounting
Scamp 2008-08-15 Release 5.9 accounting
Scamp 2008-12-18 5.12 accounting

Clone Sequence Records

RH68403.complete Sequence

2415 bp (2415 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075562

> RH68403.complete
GATCACTAAAACCGACATCGATAACTGAGCAGAGTCTTAGGGAAAATATA
CACAGCGAAAAGCAAAGTGCGAGTCAGTGCGTTTTTCTGGTCATTGAACA
GCCGTATCCAAAGTAGAATTCCCATGTCCGGCTCCGGTCTCGACGAGAAT
CCCTTCGGGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCA
GCAGGCACGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATT
ACAATCCATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACG
AACACGGCGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCA
GACCAGTTCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCT
CGGAGGAGCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAA
CTGGACCGCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAA
CTGGCCACCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGG
ACTTCGAGGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTG
TATTACATTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGG
CGGTCTAATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGG
CCATCTTCTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTC
CGACCGGCGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGT
CTTCTTCTTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGG
TGGGCTTCAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAG
TTCGATGGGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGT
GGCATTCTGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAA
AGATTCACTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAG
GCGGAGTTCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGC
CTCCTCGGCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGT
ACTAAGTGACACTCTGCTTTCCGGGGATCTAATCAAATCAAAAGGAGAAT
CAATCAATCAACCACGAACTCAAGCAGCACTCATCCTGCTTAACTGGGAC
AGAAAAAGATGATGATAGCCGCGCCAGAGAGAGGGAGATGGAGAAAGAAC
ACTTAATAAACATTGAAATAGCTTAACACGAAATGAAAGTAAAGAAAAAC
ATGAAACTAAAGCTAGCATTGGAGCATGGAACTAATAACTATTTGCTTTT
GTGCATAAACAATTCCTAGAATGCCGTCGTCTTTATTACAAATAATTACT
GTAATGATAACACAGAAACAACACACAATGCATAAACAATATTTATAAAC
GGAACAAAACCGAACTTGGAACTAAACTGAAAGTGAAAAAAAAAACCAAA
CAAAAAGGAGAAAACAAAAAAACAAAAGGAAAACTAAAGCGGCCCACGAT
GCCTTCGACACGCAGCTGCAGCGGATCAAGTAGACAGGACATCTTAATCG
CACGATATATGCCTCCAAATACAAGTATCTAGACTAAATTATTGTGTGTC
TGTCTCTGTCCTGTGGAATAATTCGATTCTGATACTAACCCAGATTAATC
AGGCGAAAGGGATGACACTGATGACGATGATGCTGCTGCTGCTGCTGCTG
ATGATGATGTTTTCTAGTTCTTTAAGTCATTAAAACGATATAGGAATAAC
CCCACTCCCTCGCACACGCAACACACACACACACACACACTCACATATAT
ACGATCTTATATATATAACAAACATAATATAAATAATATATTTAACGCTT
ACATTATAGAACTTTATCTCTCGTCGCCTCGACCAGAGAGACAACAAGAA
AGCGAAATTCATTTTTCATCCAAGCTGTGCTCCTACGCCCACTGCTCCAC
TGTCCCCCTCTCCTCCCTCCCCCCTGTTCCATGTCCCGACCCCCTTTTTC
CGCCGTCACTGTCCTGCACTCACATAAAATGTCGTGTTTTTTTGTAATCG
TAATTGTTATATATTATCTATTATCTATGTACATGAAGACAGCATATAAA
ATATATTGATTCACTTAAGTATTCACATTTTTTAGATACATTTTGTTCGT
TTCTGTTTTGCTTGCAAGTCAAACTTATTATGTTACGACCTATTTAAAAC
TGAATTGAGAATAGCTAATGACGATCTATGGATGTGTATTTAAAATTCAA
GCAAAATTTATGATAAATTCCAAAATAAATATAAAATACTTATAGATGCA
AAAAAAAAAAAAAAA

RH68403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RA 2415 Scamp-RA 15..2410 2..2398 11945 99.9 Plus
Scamp.a 2330 Scamp.a 1..1672 2..1674 8325 99.9 Plus
Scamp.a 2330 Scamp.a 1673..2327 1744..2398 3275 100 Plus
Scamp-RB 704 Scamp-RB 8..420 2..414 2065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15336121..15337772 2398..746 8185 99.8 Minus
chrX 22417052 chrX 15339222..15339450 414..186 1145 100 Minus
chrX 22417052 chrX 15338320..15338524 616..412 1025 100 Minus
chrX 22417052 chrX 15339645..15339830 187..2 930 100 Minus
chrX 22417052 chrX 15337834..15337965 748..617 660 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15446180..15447831 2398..746 8215 99.9 Minus
X 23542271 X 15449281..15449509 414..186 1145 100 Minus
X 23542271 X 15448379..15448583 616..412 1025 100 Minus
X 23542271 X 15449704..15449889 187..2 930 100 Minus
X 23542271 X 15447893..15448024 748..617 660 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15454278..15455929 2398..746 8225 99.9 Minus
X 23527363 X 15457379..15457607 414..186 1145 100 Minus
X 23527363 X 15456477..15456681 616..412 1025 100 Minus
X 23527363 X 15457802..15457987 187..2 930 100 Minus
X 23527363 X 15455991..15456122 748..617 660 100 Minus
Blast to na_te.dros performed 2019-03-16 23:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 913..1084 1430..1599 217 61.9 Plus
412 7567 412 412 7567bp 1183..1224 2354..2397 124 81.8 Plus

RH68403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:48:22 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15336120..15337771 747..2399 99 <- Minus
chrX 15337836..15337965 617..746 100 <- Minus
chrX 15338320..15338521 415..616 100 <- Minus
chrX 15339222..15339449 187..414 100 <- Minus
chrX 15339646..15339830 1..186 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:53:00 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 124..1155 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:48:40 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 124..1155 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:25:03 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 124..1155 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:01 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 124..1155 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:02 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 124..1155 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:12:40 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..2396 2..2399 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:48:40 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..2396 2..2399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:25:03 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..2390 8..2399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:01 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..2396 2..2399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:02 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..2390 8..2399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:22 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
X 15449705..15449889 1..186 99   Minus
X 15449281..15449508 187..414 100 <- Minus
X 15448379..15448580 415..616 100 <- Minus
X 15446179..15447830 747..2399 99 <- Minus
X 15447895..15448024 617..746 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:22 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
X 15449705..15449889 1..186 99   Minus
X 15449281..15449508 187..414 100 <- Minus
X 15448379..15448580 415..616 100 <- Minus
X 15446179..15447830 747..2399 99 <- Minus
X 15447895..15448024 617..746 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:48:22 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
X 15449705..15449889 1..186 99   Minus
X 15449281..15449508 187..414 100 <- Minus
X 15448379..15448580 415..616 100 <- Minus
X 15446179..15447830 747..2399 99 <- Minus
X 15447895..15448024 617..746 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:25:03 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15342412..15342613 415..616 100 <- Minus
arm_X 15340212..15341863 747..2399 99 <- Minus
arm_X 15341928..15342057 617..746 100 <- Minus
arm_X 15343314..15343541 187..414 100 <- Minus
arm_X 15343738..15343922 1..186 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:55 Download gff for RH68403.complete
Subject Subject Range Query Range Percent Splice Strand
X 15454277..15455928 747..2399 99 <- Minus
X 15455993..15456122 617..746 100 <- Minus
X 15456477..15456678 415..616 100 <- Minus
X 15457379..15457606 187..414 100 <- Minus
X 15457803..15457987 1..186 99   Minus

RH68403.pep Sequence

Translation from 123 to 1154

> RH68403.pep
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*

RH68403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21035-PA 342 GF21035-PA 1..342 1..343 1668 94.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19402-PA 343 GG19402-PA 1..343 1..343 1808 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17941-PA 343 GH17941-PA 1..343 1..343 1431 82.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-PC 343 CG9195-PC 1..343 1..343 1780 100 Plus
Scamp-PA 343 CG9195-PA 1..343 1..343 1780 100 Plus
Scamp-PD 112 CG9195-PD 1..97 1..97 489 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15411-PA 340 GI15411-PA 1..340 1..343 1418 82.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14738-PA 342 GL14738-PA 1..342 1..343 1668 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21604-PA 342 GA21604-PA 1..342 1..343 1663 93 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19558-PA 174 GM19558-PA 1..172 1..172 902 98.3 Plus
Dsec\GM19562-PA 108 GM19562-PA 13..108 248..343 470 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16370-PA 335 GJ16370-PA 1..335 1..343 1051 69.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20009-PA 347 GK20009-PA 1..347 1..343 1448 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Scamp-PA 343 GE16047-PA 1..343 1..343 1810 99.4 Plus

RH68403.hyp Sequence

Translation from 123 to 1154

> RH68403.hyp
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*

RH68403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-PC 343 CG9195-PC 1..343 1..343 1780 100 Plus
Scamp-PA 343 CG9195-PA 1..343 1..343 1780 100 Plus
Scamp-PD 112 CG9195-PD 1..97 1..97 489 100 Plus