![]() | BDGP Sequence Production Resources |
Search the DGRC for RH68403
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 684 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Scamp-RA |
Protein status: | RH68403.pep: gold |
Preliminary Size: | 1447 |
Sequenced Size: | 2415 |
Gene | Date | Evidence |
---|---|---|
CG9195 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9195 | 2002-01-11 | Blastp of sequenced clone |
CG9195 | 2003-01-01 | Sim4 clustering to Release 3 |
Scamp | 2008-04-29 | Release 5.5 accounting |
Scamp | 2008-08-15 | Release 5.9 accounting |
Scamp | 2008-12-18 | 5.12 accounting |
2415 bp (2415 high quality bases) assembled on 2002-01-11
GenBank Submission: AY075562
> RH68403.complete GATCACTAAAACCGACATCGATAACTGAGCAGAGTCTTAGGGAAAATATA CACAGCGAAAAGCAAAGTGCGAGTCAGTGCGTTTTTCTGGTCATTGAACA GCCGTATCCAAAGTAGAATTCCCATGTCCGGCTCCGGTCTCGACGAGAAT CCCTTCGGGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCA GCAGGCACGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATT ACAATCCATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACG AACACGGCGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCA GACCAGTTCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCT CGGAGGAGCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAA CTGGACCGCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAA CTGGCCACCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGG ACTTCGAGGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTG TATTACATTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGG CGGTCTAATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGG CCATCTTCTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTC CGACCGGCGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGT CTTCTTCTTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGG TGGGCTTCAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAG TTCGATGGGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGT GGCATTCTGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAA AGATTCACTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAG GCGGAGTTCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGC CTCCTCGGCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGT ACTAAGTGACACTCTGCTTTCCGGGGATCTAATCAAATCAAAAGGAGAAT CAATCAATCAACCACGAACTCAAGCAGCACTCATCCTGCTTAACTGGGAC AGAAAAAGATGATGATAGCCGCGCCAGAGAGAGGGAGATGGAGAAAGAAC ACTTAATAAACATTGAAATAGCTTAACACGAAATGAAAGTAAAGAAAAAC ATGAAACTAAAGCTAGCATTGGAGCATGGAACTAATAACTATTTGCTTTT GTGCATAAACAATTCCTAGAATGCCGTCGTCTTTATTACAAATAATTACT GTAATGATAACACAGAAACAACACACAATGCATAAACAATATTTATAAAC GGAACAAAACCGAACTTGGAACTAAACTGAAAGTGAAAAAAAAAACCAAA CAAAAAGGAGAAAACAAAAAAACAAAAGGAAAACTAAAGCGGCCCACGAT GCCTTCGACACGCAGCTGCAGCGGATCAAGTAGACAGGACATCTTAATCG CACGATATATGCCTCCAAATACAAGTATCTAGACTAAATTATTGTGTGTC TGTCTCTGTCCTGTGGAATAATTCGATTCTGATACTAACCCAGATTAATC AGGCGAAAGGGATGACACTGATGACGATGATGCTGCTGCTGCTGCTGCTG ATGATGATGTTTTCTAGTTCTTTAAGTCATTAAAACGATATAGGAATAAC CCCACTCCCTCGCACACGCAACACACACACACACACACACTCACATATAT ACGATCTTATATATATAACAAACATAATATAAATAATATATTTAACGCTT ACATTATAGAACTTTATCTCTCGTCGCCTCGACCAGAGAGACAACAAGAA AGCGAAATTCATTTTTCATCCAAGCTGTGCTCCTACGCCCACTGCTCCAC TGTCCCCCTCTCCTCCCTCCCCCCTGTTCCATGTCCCGACCCCCTTTTTC CGCCGTCACTGTCCTGCACTCACATAAAATGTCGTGTTTTTTTGTAATCG TAATTGTTATATATTATCTATTATCTATGTACATGAAGACAGCATATAAA ATATATTGATTCACTTAAGTATTCACATTTTTTAGATACATTTTGTTCGT TTCTGTTTTGCTTGCAAGTCAAACTTATTATGTTACGACCTATTTAAAAC TGAATTGAGAATAGCTAATGACGATCTATGGATGTGTATTTAAAATTCAA GCAAAATTTATGATAAATTCCAAAATAAATATAAAATACTTATAGATGCA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scamp-RA | 2415 | Scamp-RA | 15..2410 | 2..2398 | 11945 | 99.9 | Plus |
Scamp.a | 2330 | Scamp.a | 1..1672 | 2..1674 | 8325 | 99.9 | Plus |
Scamp.a | 2330 | Scamp.a | 1673..2327 | 1744..2398 | 3275 | 100 | Plus |
Scamp-RB | 704 | Scamp-RB | 8..420 | 2..414 | 2065 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15336121..15337772 | 2398..746 | 8185 | 99.8 | Minus |
chrX | 22417052 | chrX | 15339222..15339450 | 414..186 | 1145 | 100 | Minus |
chrX | 22417052 | chrX | 15338320..15338524 | 616..412 | 1025 | 100 | Minus |
chrX | 22417052 | chrX | 15339645..15339830 | 187..2 | 930 | 100 | Minus |
chrX | 22417052 | chrX | 15337834..15337965 | 748..617 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15446180..15447831 | 2398..746 | 8215 | 99.9 | Minus |
X | 23542271 | X | 15449281..15449509 | 414..186 | 1145 | 100 | Minus |
X | 23542271 | X | 15448379..15448583 | 616..412 | 1025 | 100 | Minus |
X | 23542271 | X | 15449704..15449889 | 187..2 | 930 | 100 | Minus |
X | 23542271 | X | 15447893..15448024 | 748..617 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15454278..15455929 | 2398..746 | 8225 | 99.9 | Minus |
X | 23527363 | X | 15457379..15457607 | 414..186 | 1145 | 100 | Minus |
X | 23527363 | X | 15456477..15456681 | 616..412 | 1025 | 100 | Minus |
X | 23527363 | X | 15457802..15457987 | 187..2 | 930 | 100 | Minus |
X | 23527363 | X | 15455991..15456122 | 748..617 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 913..1084 | 1430..1599 | 217 | 61.9 | Plus |
412 | 7567 | 412 412 7567bp | 1183..1224 | 2354..2397 | 124 | 81.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15336120..15337771 | 747..2399 | 99 | <- | Minus |
chrX | 15337836..15337965 | 617..746 | 100 | <- | Minus |
chrX | 15338320..15338521 | 415..616 | 100 | <- | Minus |
chrX | 15339222..15339449 | 187..414 | 100 | <- | Minus |
chrX | 15339646..15339830 | 1..186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..1032 | 124..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..1032 | 124..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..1032 | 124..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..1032 | 124..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..1032 | 124..1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..2396 | 2..2399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..2396 | 2..2399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..2390 | 8..2399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..2396 | 2..2399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scamp-RA | 1..2390 | 8..2399 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15449705..15449889 | 1..186 | 99 | Minus | |
X | 15449281..15449508 | 187..414 | 100 | <- | Minus |
X | 15448379..15448580 | 415..616 | 100 | <- | Minus |
X | 15446179..15447830 | 747..2399 | 99 | <- | Minus |
X | 15447895..15448024 | 617..746 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15449705..15449889 | 1..186 | 99 | Minus | |
X | 15449281..15449508 | 187..414 | 100 | <- | Minus |
X | 15448379..15448580 | 415..616 | 100 | <- | Minus |
X | 15446179..15447830 | 747..2399 | 99 | <- | Minus |
X | 15447895..15448024 | 617..746 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15449705..15449889 | 1..186 | 99 | Minus | |
X | 15449281..15449508 | 187..414 | 100 | <- | Minus |
X | 15448379..15448580 | 415..616 | 100 | <- | Minus |
X | 15446179..15447830 | 747..2399 | 99 | <- | Minus |
X | 15447895..15448024 | 617..746 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15342412..15342613 | 415..616 | 100 | <- | Minus |
arm_X | 15340212..15341863 | 747..2399 | 99 | <- | Minus |
arm_X | 15341928..15342057 | 617..746 | 100 | <- | Minus |
arm_X | 15343314..15343541 | 187..414 | 100 | <- | Minus |
arm_X | 15343738..15343922 | 1..186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15454277..15455928 | 747..2399 | 99 | <- | Minus |
X | 15455993..15456122 | 617..746 | 100 | <- | Minus |
X | 15456477..15456678 | 415..616 | 100 | <- | Minus |
X | 15457379..15457606 | 187..414 | 100 | <- | Minus |
X | 15457803..15457987 | 1..186 | 99 | Minus |
Translation from 123 to 1154
> RH68403.pep MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21035-PA | 342 | GF21035-PA | 1..342 | 1..343 | 1668 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19402-PA | 343 | GG19402-PA | 1..343 | 1..343 | 1808 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17941-PA | 343 | GH17941-PA | 1..343 | 1..343 | 1431 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scamp-PC | 343 | CG9195-PC | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PA | 343 | CG9195-PA | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PD | 112 | CG9195-PD | 1..97 | 1..97 | 489 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15411-PA | 340 | GI15411-PA | 1..340 | 1..343 | 1418 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14738-PA | 342 | GL14738-PA | 1..342 | 1..343 | 1668 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21604-PA | 342 | GA21604-PA | 1..342 | 1..343 | 1663 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19558-PA | 174 | GM19558-PA | 1..172 | 1..172 | 902 | 98.3 | Plus |
Dsec\GM19562-PA | 108 | GM19562-PA | 13..108 | 248..343 | 470 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16370-PA | 335 | GJ16370-PA | 1..335 | 1..343 | 1051 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20009-PA | 347 | GK20009-PA | 1..347 | 1..343 | 1448 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Scamp-PA | 343 | GE16047-PA | 1..343 | 1..343 | 1810 | 99.4 | Plus |
Translation from 123 to 1154
> RH68403.hyp MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRY*