BDGP Sequence Production Resources |
Search the DGRC for RH68439
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 684 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4019-RA |
Protein status: | RH68439.pep: gold |
Preliminary Size: | 1089 |
Sequenced Size: | 1101 |
Gene | Date | Evidence |
---|---|---|
CG4019 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4019 | 2003-08-11 | Blastp of sequenced clone |
CG4019 | 2008-04-29 | Release 5.5 accounting |
CG4019 | 2008-08-15 | Release 5.9 accounting |
CG4019 | 2008-12-18 | 5.12 accounting |
1101 bp (1101 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010205
> RH68439.complete GGCAGACGATCGCGCGTATTTAGCTGGAGGCCTTTTCCACACTCAATAGC AAACAAACGATCGATCGGAACGCAGTTGCTGTAAGGTCTTCAAAATGAAG GGATCGACGCTGGACAAAATCTCCGCCTTCCTCGGCGAGCTCATCGGCAC CGGCATCCTGGTCTTCCTGGGCTGCATGGGTTGCGTGAAGACGGACCTCT TTCCCAACAACCATCTGCAGATTGTGCTGAACTTCGGCTTCGCCGTCCTC ATCGCCATCCAGTGCTTTGGCTGCGTCTCCGGTGCCCATCTGAATCCCGC CGTGACCGTGGCCGCCTACATCTACGAGATGGTCACCCTGCGCATGGCAT TTGCCTACTTCGCCGCCCAGATGCTGGGCGCCTTCATCGGCTACGGCCTG CTCATGGTCCTGCTTCCCTCGCCCACACTTACGGTGGGCGCTGGGCTCTG CGTGACCTTGCCCCACACCAGCGTAACCACGGGCCAGGCCCTCGGCATCG AGTTCGTAATCACCTCCATCCTGGTCATCGTCTGCTGCGGAGTGTGGGAT CCGCGCAACTCCAAGTTCCATGACTCCGTGGGCATTCGATTTGGCCTGGC CATCGCCTGTCTCGCCTGCGCTGCCGGTCCCTTCACCGGCGGCAGCATGA ACCCGGCCAGGTCGTTCGCCCCCGCCCTGTGGAACAAGCACTTCGAGAGC AACTGGATCTACTGGCTGGCCCCGCTGAGCTCCTCCGCCATCACCGCCTA CGCCTACAAGGTCGTCTTCCGCCGCGAGGTGGTTGAGGCGGAGATCACCT CCAATGAGAAGCTGCGGCAACTGGAGGACGTCCAGCTGTCGTAAGGCCAA AGACATTGCTGTAGGAAAAGCCCTAACTAATTTAGTTAATATCTAAGATG CCGAATTTTAAAATAATGCATTCGTTGTACGCTAATGTTAGCAGTGTCTT CACAAAGTGGTTCGAACGTTTCAAAAGGCGAACCAAGTGCACACACTTAC ATAAGCCCTTGAAACGATAAACGTCTTGGTGAAAACACTAATTGCCTTCA GAAATAAAGAACATCGAGATTTTTAATCTAAAACCAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4019.c | 1517 | CG4019.c | 352..1444 | 2..1094 | 5420 | 99.7 | Plus |
CG4019-RA | 1191 | CG4019-RA | 26..1118 | 2..1094 | 5420 | 99.7 | Plus |
CG4019-RB | 1346 | CG4019-RB | 254..1273 | 75..1094 | 5070 | 99.8 | Plus |
CG4019-RB | 1346 | CG4019-RB | 1..48 | 28..75 | 240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19494360..19494913 | 626..73 | 2755 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 19493822..19494280 | 1084..626 | 2250 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 19490872..19491047 | 402..227 | 400 | 81.8 | Minus |
chr2R | 21145070 | chr2R | 19500899..19500972 | 75..2 | 355 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 19492603..19492688 | 317..232 | 220 | 83.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23608131..23608684 | 626..73 | 2770 | 100 | Minus |
2R | 25286936 | 2R | 23607583..23608051 | 1094..626 | 2315 | 99.6 | Minus |
2R | 25286936 | 2R | 23604625..23604800 | 402..227 | 400 | 81.8 | Minus |
2R | 25286936 | 2R | 23614673..23614746 | 75..2 | 355 | 98.6 | Minus |
2R | 25286936 | 2R | 23606358..23606443 | 317..232 | 205 | 82.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23609330..23609883 | 626..73 | 2770 | 100 | Minus |
2R | 25260384 | 2R | 23608782..23609250 | 1094..626 | 2315 | 99.5 | Minus |
2R | 25260384 | 2R | 23605824..23605999 | 402..227 | 400 | 81.8 | Minus |
2R | 25260384 | 2R | 23615872..23615945 | 75..2 | 355 | 98.6 | Minus |
2R | 25260384 | 2R | 23607557..23607642 | 317..232 | 205 | 82.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19493821..19494280 | 626..1085 | 99 | <- | Minus |
chr2R | 19494361..19494910 | 76..625 | 99 | <- | Minus |
chr2R | 19500899..19500972 | 1..75 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RC | 17..786 | 75..844 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RC | 17..786 | 75..844 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RF | 123..894 | 73..844 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RC | 17..786 | 75..844 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RF | 123..894 | 73..844 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RA | 1..1084 | 2..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RA | 1..1084 | 2..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RA | 1..1048 | 38..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RA | 1..1084 | 2..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4019-RA | 1..1048 | 38..1085 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23607592..23608051 | 626..1085 | 99 | <- | Minus |
2R | 23608132..23608681 | 76..625 | 100 | <- | Minus |
2R | 23614673..23614746 | 1..75 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23607592..23608051 | 626..1085 | 99 | <- | Minus |
2R | 23608132..23608681 | 76..625 | 100 | <- | Minus |
2R | 23614673..23614746 | 1..75 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23607592..23608051 | 626..1085 | 99 | <- | Minus |
2R | 23608132..23608681 | 76..625 | 100 | <- | Minus |
2R | 23614673..23614746 | 1..75 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19495115..19495574 | 626..1085 | 99 | <- | Minus |
arm_2R | 19495655..19496204 | 76..625 | 100 | <- | Minus |
arm_2R | 19502196..19502269 | 1..75 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23608809..23609268 | 626..1085 | 99 | <- | Minus |
2R | 23609349..23609898 | 76..625 | 100 | <- | Minus |
2R | 23615890..23615963 | 1..75 | 97 | Minus |
Translation from 94 to 843
> RH68439.hyp MKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFA VLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGY GLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGV WDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHF ESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4019-PB | 249 | CG4019-PB | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PD | 249 | CG4019-PD | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PA | 249 | CG4019-PA | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PC | 261 | CG4019-PC | 13..261 | 1..249 | 1295 | 100 | Plus |
CG4019-PE | 286 | CG4019-PE | 38..286 | 1..249 | 1295 | 100 | Plus |
Translation from 94 to 843
> RH68439.pep MKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFA VLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGY GLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGV WDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHF ESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11830-PA | 244 | GF11830-PA | 1..244 | 1..244 | 1047 | 77.5 | Plus |
Dana\GF11832-PA | 266 | GF11832-PA | 18..262 | 6..244 | 705 | 53.5 | Plus |
Dana\GF11831-PA | 272 | GF11831-PA | 29..269 | 9..246 | 647 | 52.3 | Plus |
Dana\GF13068-PA | 242 | GF13068-PA | 12..198 | 13..199 | 310 | 35.6 | Plus |
Dana\GF12394-PA | 245 | GF12394-PA | 26..244 | 12..238 | 307 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20010-PA | 261 | GG20010-PA | 13..261 | 1..249 | 1213 | 96 | Plus |
Dere\GG20012-PA | 294 | GG20012-PA | 42..277 | 1..233 | 731 | 55.5 | Plus |
Dere\GG20011-PA | 271 | GG20011-PA | 19..267 | 1..246 | 629 | 47.8 | Plus |
Dere\GG22871-PA | 238 | GG22871-PA | 14..234 | 15..234 | 315 | 33 | Plus |
Dere\GG22646-PA | 245 | GG22646-PA | 26..244 | 12..238 | 278 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21219-PA | 246 | GH21219-PA | 1..246 | 1..249 | 1079 | 81.5 | Plus |
Dgri\GH21221-PA | 259 | GH21221-PA | 14..257 | 1..239 | 749 | 57.8 | Plus |
Dgri\GH21220-PA | 267 | GH21220-PA | 19..267 | 1..244 | 629 | 48.4 | Plus |
Dgri\GH20503-PA | 247 | GH20503-PA | 26..246 | 12..238 | 289 | 36.4 | Plus |
Dgri\GH20663-PA | 250 | GH20663-PA | 12..241 | 13..237 | 271 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Eglp4-PF | 297 | CG4019-PF | 49..297 | 1..249 | 1295 | 100 | Plus |
Eglp4-PE | 286 | CG4019-PE | 38..286 | 1..249 | 1295 | 100 | Plus |
Eglp4-PC | 261 | CG4019-PC | 13..261 | 1..249 | 1295 | 100 | Plus |
Eglp4-PB | 249 | CG4019-PB | 1..249 | 1..249 | 1295 | 100 | Plus |
Eglp4-PD | 249 | CG4019-PD | 1..249 | 1..249 | 1295 | 100 | Plus |
Eglp4-PA | 249 | CG4019-PA | 1..249 | 1..249 | 1295 | 100 | Plus |
Eglp2-PA | 265 | CG17664-PA | 18..249 | 6..234 | 712 | 55.6 | Plus |
Eglp2-PC | 290 | CG17664-PC | 43..274 | 6..234 | 712 | 55.6 | Plus |
Eglp3-PB | 270 | CG17662-PB | 19..267 | 1..246 | 634 | 48.2 | Plus |
Eglp1-PA | 238 | CG5398-PA | 14..196 | 15..196 | 347 | 37.7 | Plus |
Drip-PF | 278 | CG9023-PF | 27..254 | 13..248 | 305 | 33.5 | Plus |
Drip-PG | 233 | CG9023-PG | 27..232 | 13..226 | 302 | 35.5 | Plus |
Drip-PE | 239 | CG9023-PE | 21..226 | 13..226 | 302 | 35.5 | Plus |
Drip-PD | 242 | CG9023-PD | 24..229 | 13..226 | 302 | 35.5 | Plus |
Drip-PC | 243 | CG9023-PC | 25..230 | 13..226 | 302 | 35.5 | Plus |
Drip-PB | 245 | CG9023-PB | 27..232 | 13..226 | 302 | 35.5 | Plus |
Drip-PA | 245 | CG9023-PA | 27..232 | 13..226 | 302 | 35.5 | Plus |
Prip-PD | 259 | CG7777-PD | 13..250 | 1..245 | 288 | 31 | Plus |
Prip-PA | 264 | CG7777-PA | 13..250 | 1..245 | 288 | 31 | Plus |
Prip-PB | 268 | CG7777-PB | 13..250 | 1..245 | 288 | 31 | Plus |
Prip-PC | 270 | CG7777-PC | 13..250 | 1..245 | 288 | 31 | Plus |
bib-PA | 696 | CG4722-PA | 61..277 | 5..225 | 212 | 27.4 | Plus |
bib-PB | 737 | CG4722-PB | 61..277 | 5..225 | 212 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20504-PA | 249 | GI20504-PA | 1..249 | 1..249 | 1039 | 82.3 | Plus |
Dmoj\GI20505-PA | 274 | GI20505-PA | 24..274 | 1..246 | 640 | 49 | Plus |
Dmoj\GI20506-PA | 247 | GI20506-PA | 6..234 | 2..227 | 575 | 52 | Plus |
Dmoj\GI21049-PA | 247 | GI21049-PA | 26..246 | 12..238 | 300 | 38.2 | Plus |
Dmoj\GI19026-PA | 242 | GI19026-PA | 14..241 | 15..241 | 298 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17596-PA | 249 | GL17596-PA | 1..249 | 1..249 | 1149 | 85.1 | Plus |
Dper\GL17598-PA | 266 | GL17598-PA | 14..264 | 1..244 | 727 | 54.6 | Plus |
Dper\GL17597-PA | 272 | GL17597-PA | 27..271 | 7..248 | 654 | 50.6 | Plus |
Dper\GL21483-PA | 245 | GL21483-PA | 3..199 | 6..199 | 322 | 37.7 | Plus |
Dper\GL18952-PA | 691 | GL18952-PA | 98..285 | 41..233 | 182 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17871-PA | 249 | GA17871-PA | 1..249 | 1..249 | 1147 | 85.1 | Plus |
Dpse\GA24838-PA | 266 | GA24838-PA | 14..264 | 1..244 | 730 | 54.6 | Plus |
Dpse\GA24837-PA | 273 | GA24837-PA | 28..272 | 7..248 | 652 | 50.6 | Plus |
Dpse\GA26287-PA | 245 | GA26287-PA | 3..199 | 6..199 | 325 | 37.7 | Plus |
Dpse\GA24443-PA | 244 | GA24443-PA | 26..240 | 12..233 | 317 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15522-PA | 261 | GM15522-PA | 13..261 | 1..249 | 1265 | 96.4 | Plus |
Dsec\GM15524-PA | 265 | GM15524-PA | 13..249 | 1..234 | 713 | 53.2 | Plus |
Dsec\GM15523-PA | 274 | GM15523-PA | 19..271 | 1..246 | 611 | 47.4 | Plus |
Dsec\GM20426-PA | 245 | GM20426-PA | 26..244 | 12..238 | 288 | 34.4 | Plus |
Dsec\GM21291-PA | 264 | GM21291-PA | 13..250 | 1..245 | 246 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25026-PA | 261 | GD25026-PA | 13..261 | 1..249 | 1270 | 96.8 | Plus |
Dsim\GD25028-PA | 265 | GD25028-PA | 13..249 | 1..234 | 710 | 53.2 | Plus |
Dsim\GD25027-PA | 265 | GD25027-PA | 19..262 | 1..246 | 614 | 49.2 | Plus |
Dsim\GD10798-PA | 264 | GD10798-PA | 13..250 | 1..245 | 246 | 31 | Plus |
Dsim\GD23647-PA | 674 | GD23647-PA | 100..288 | 41..244 | 184 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22355-PA | 252 | GJ22355-PA | 1..222 | 1..222 | 954 | 80.6 | Plus |
Dvir\GJ22357-PA | 247 | GJ22357-PA | 7..246 | 6..240 | 731 | 57.3 | Plus |
Dvir\GJ22356-PA | 274 | GJ22356-PA | 142..274 | 116..246 | 331 | 47 | Plus |
Dvir\GJ19992-PA | 248 | GJ19992-PA | 12..202 | 13..202 | 301 | 35.1 | Plus |
Dvir\GJ21971-PA | 305 | GJ21971-PA | 84..304 | 12..238 | 283 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23174-PA | 249 | GK23174-PA | 1..249 | 1..249 | 1064 | 83.5 | Plus |
Dwil\GK23178-PA | 270 | GK23178-PA | 16..269 | 1..248 | 801 | 57.9 | Plus |
Dwil\GK23177-PA | 262 | GK23177-PA | 15..257 | 7..246 | 664 | 51.4 | Plus |
Dwil\GK23175-PA | 238 | GK23175-PA | 12..235 | 1..228 | 456 | 42.1 | Plus |
Dwil\GK21884-PA | 245 | GK21884-PA | 26..244 | 12..238 | 302 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11546-PA | 261 | GE11546-PA | 13..261 | 1..249 | 1211 | 96 | Plus |
Dyak\GE11549-PA | 265 | GE11549-PA | 13..249 | 1..234 | 721 | 54 | Plus |
Dyak\GE11548-PA | 271 | GE11548-PA | 19..267 | 1..246 | 621 | 47.4 | Plus |
Dyak\GE14309-PA | 238 | GE14309-PA | 14..202 | 15..202 | 341 | 38.1 | Plus |
Dyak\GE13520-PA | 245 | GE13520-PA | 26..244 | 12..238 | 291 | 34.4 | Plus |