Clone RH68464 Report

Search the DGRC for RH68464

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:684
Well:64
Vector:pFlc-1
Associated Gene/TranscriptCG9914-RA
Protein status:RH68464.pep: gold
Preliminary Size:1038
Sequenced Size:1287

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9914 2002-01-01 Sim4 clustering to Release 2
CG9914 2003-01-01 Sim4 clustering to Release 3
CG9914 2003-05-20 Blastp of sequenced clone
CG9914 2008-04-29 Release 5.5 accounting
CG9914 2008-08-15 Release 5.9 accounting
CG9914 2008-12-18 5.12 accounting

Clone Sequence Records

RH68464.complete Sequence

1287 bp (1287 high quality bases) assembled on 2003-05-20

GenBank Submission: BT009948

> RH68464.complete
GAAAACGCATGTACGCTGTGCCAAGTGGCGGTCGACAGCAATAGCTCCTC
CATAGCTCCTTCTTAAATCCAACTCCACCGAAGTAAATCGGCAAAAGTAA
ATAAACAAAGATGTCGGCAAAGAACGAGAAAGTTGGCATTGTGGGCAGCG
GTCTAATTGGTCGCTCCTGGTCCATGCTGTTCGCCTCGGTGGGCTACCAG
GTGGTGCTGTACGACATCCTGCCCGAGCAGGTGTCCACCGCTCTGACTGC
CACGCAGAAGGAGCTGCAGGATCTGGAGGCCAAGGGCCTGCTACGCGGCA
AACTGACCGCCGCCCAGCAATTCGCCTGCATCTCCGGCACCAACGACCTC
AAGGAGCTGGTCAAGGGCGCCATCTTCGTCCAGGAGTGCATCCCCGAGCG
TCTCGATCTGAAAAAGGCGCTCTACAAGCAGTTGGACGCCGTCGTCGGAC
CCAACACCATCCTCTCCAGCTCCACCAGCACTTTTCTGCCCTCCCTCTTC
AGCGCGGATCTGAAAAACAAGGCCAATGTTTTGGTCTCGCATCCCGTCAA
CCCACCGTACTACGTGCCTCTGGTCGAGATCGTGCCTGCGCCGTGGACGA
AACCGGAATGGGTGAAGAAGACCCGTGCCCTGATGGAGGAGATTGGCCAG
AAACCAGTTACGCTGTCGCGGGAGATCGAGGGCTTCGCCCTCAACCGCAT
CCAGTATGCCATCCTGAACGAGACATGGCGTTTGGTCGAGGCCGGCATCC
TGAATGTCAAGGACATCGATAGCGTGATGAGCAATGGACTGGGACCGCGC
TACGCCTTCCTGGGTCCCCTGGAGACGGCCCATCTGAATGCCGAGGGCAT
GGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTAGCGAGA
CAATGGGACCGACACCGAAAATGGAGGGCCCCGTCGCCGTCGAGGTGGCC
AAGCAGCTGGGCGAGATGGTGCCGCTGGATCAGTTGGCCCAACGCCGCAA
CTACCGCGACAACTGCCTCACCCAGTTGAGCATTCTCAAGAACAAGCTCA
ACCAGTAAACTCATTATTATCTTGCTGCTGCGTTTTTTTTTTTTTGTTTT
TTCTTCATTGTTGTGATATGCTAGCGCCACATACGTTAAATATACGGAAA
TTGCTTAACTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RH68464.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-RA 1600 CG9914-RA 395..1557 3..1165 5815 100 Plus
CG3679-RA 2787 CG3679-RA 2738..2787 1165..1116 250 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16196616..16197251 1163..528 3180 100 Minus
chrX 22417052 chrX 16197492..16197875 529..146 1905 99.7 Minus
chrX 22417052 chrX 16197942..16198087 148..3 715 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:37:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16306910..16307547 1165..528 3190 100 Minus
X 23542271 X 16307788..16308171 529..146 1920 100 Minus
X 23542271 X 16308238..16308383 148..3 730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16315008..16315645 1165..528 3190 100 Minus
X 23527363 X 16315886..16316269 529..146 1920 100 Minus
X 23527363 X 16316336..16316481 148..3 730 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:29:14 has no hits.

RH68464.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:29:57 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16196616..16197251 528..1163 100 <- Minus
chrX 16197494..16197872 149..527 99 <- Minus
chrX 16197942..16198087 1..148 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:53:04 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 111..1058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:13 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 111..1058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:11 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 111..1058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:08 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 111..1058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:20:07 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 111..1058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:28 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..1161 3..1163 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:13 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..1161 3..1163 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:11 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 9..1171 1..1163 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:09 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:07 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 9..1171 1..1163 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:57 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
X 16306912..16307547 528..1163 100 <- Minus
X 16307790..16308168 149..527 100 <- Minus
X 16308238..16308383 1..148 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:57 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
X 16306912..16307547 528..1163 100 <- Minus
X 16307790..16308168 149..527 100 <- Minus
X 16308238..16308383 1..148 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:57 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
X 16306912..16307547 528..1163 100 <- Minus
X 16307790..16308168 149..527 100 <- Minus
X 16308238..16308383 1..148 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:11 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16200945..16201580 528..1163 100 <- Minus
arm_X 16201823..16202201 149..527 100 <- Minus
arm_X 16202271..16202416 1..148 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:38 Download gff for RH68464.complete
Subject Subject Range Query Range Percent Splice Strand
X 16315010..16315645 528..1163 100 <- Minus
X 16315888..16316266 149..527 100 <- Minus
X 16316336..16316481 1..148 98   Minus

RH68464.hyp Sequence

Translation from 110 to 1057

> RH68464.hyp
MSAKNEKVGIVGSGLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQK
ELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVKGAIFVQECIPERLDL
KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPY
YVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYA
ILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNAEGMANY
FERYSNTIYAVSETMGPTPKMEGPVAVEVAKQLGEMVPLDQLAQRRNYRD
NCLTQLSILKNKLNQ*

RH68464.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-PB 315 CG9914-PB 1..315 1..315 1603 100 Plus
CG9914-PA 315 CG9914-PA 1..315 1..315 1603 100 Plus
CG10131-PA 315 CG10131-PA 3..313 5..312 884 55.9 Plus
Mtpalpha-PB 744 CG4389-PB 337..545 8..220 175 26.3 Plus
Mtpalpha-PA 783 CG4389-PA 376..584 8..220 175 26.3 Plus

RH68464.pep Sequence

Translation from 110 to 1057

> RH68464.pep
MSAKNEKVGIVGSGLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQK
ELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVKGAIFVQECIPERLDL
KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPY
YVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYA
ILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNAEGMANY
FERYSNTIYAVSETMGPTPKMEGPVAVEVAKQLGEMVPLDQLAQRRNYRD
NCLTQLSILKNKLNQ*

RH68464.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19071-PA 317 GF19071-PA 1..315 1..315 1555 92.1 Plus
Dana\GF11336-PA 315 GF11336-PA 3..315 5..314 949 58.1 Plus
Dana\GF21951-PA 1092 GF21951-PA 689..893 8..220 155 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19334-PA 315 GG19334-PA 1..315 1..315 1648 98.7 Plus
Dere\GG20470-PA 315 GG20470-PA 3..315 5..314 923 55.3 Plus
Dere\GG24022-PA 783 GG24022-PA 376..584 8..220 186 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12278-PA 318 GH12278-PA 6..317 4..315 1394 82.4 Plus
Dgri\GH22921-PA 315 GH22921-PA 3..314 5..313 925 56.7 Plus
Dgri\GH11058-PA 785 GH11058-PA 376..604 6..245 166 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Had1-PB 315 CG9914-PB 1..315 1..315 1603 100 Plus
Had1-PA 315 CG9914-PA 1..315 1..315 1603 100 Plus
Had2-PA 315 CG10131-PA 3..313 5..312 884 55.9 Plus
Mtpalpha-PB 744 CG4389-PB 337..545 8..220 175 26.3 Plus
Mtpalpha-PA 783 CG4389-PA 376..584 8..220 175 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10976-PA 313 GI10976-PA 3..310 7..314 1415 85.7 Plus
Dmoj\GI18410-PA 315 GI18410-PA 3..314 5..313 999 59.6 Plus
Dmoj\GI17575-PA 791 GI17575-PA 384..633 8..256 158 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21343-PA 318 GL21343-PA 6..316 4..314 1518 91.3 Plus
Dper\GL11451-PA 318 GL11451-PA 3..318 2..314 1001 59.5 Plus
Dper\GL19219-PA 787 GL19219-PA 380..588 8..220 177 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23040-PA 318 GA23040-PA 6..316 4..314 1520 91.6 Plus
Dpse\GA10097-PA 318 GA10097-PA 3..318 2..314 998 59.2 Plus
Dpse\GA18151-PA 787 GA18151-PA 380..588 8..220 176 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13412-PA 318 GM13412-PA 6..318 3..315 1640 98.7 Plus
Dsec\GM21560-PA 315 GM21560-PA 3..315 5..314 938 56.2 Plus
Dsec\GM12408-PA 783 GM12408-PA 376..584 8..220 175 26.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11066-PA 315 GD11066-PA 3..315 5..314 938 56.2 Plus
Dsim\GD24495-PA 153 GD24495-PA 2..153 164..315 799 98 Plus
Dsim\GD22351-PA 783 GD22351-PA 376..584 8..220 175 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18534-PA 318 GJ18534-PA 4..316 2..314 1414 83.7 Plus
Dvir\GJ21492-PA 315 GJ21492-PA 3..314 5..313 992 58.7 Plus
Dvir\GJ17917-PA 788 GJ17917-PA 381..589 8..220 159 25.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25055-PA 316 GK25055-PA 5..316 4..315 1472 87.5 Plus
Dwil\GK19629-PA 315 GK19629-PA 3..315 5..314 949 57.8 Plus
Dwil\GK23812-PA 796 GK23812-PA 387..595 8..220 166 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11007-PA 315 GE11007-PA 1..315 1..315 1641 98.1 Plus
Dyak\GE13601-PA 315 GE13601-PA 3..315 5..314 926 55.3 Plus
Dyak\GE10479-PA 783 GE10479-PA 376..584 8..220 176 27.2 Plus