BDGP Sequence Production Resources |
Search the DGRC for RH70178
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 701 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gbs-76A-RA |
Protein status: | RH70178.pep: gold |
Sequenced Size: | 3558 |
Gene | Date | Evidence |
---|---|---|
CG9619 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9619 | 2008-04-29 | Stopped prior to 5.5 |
3558 bp assembled on 2009-04-23
GenBank Submission: BT082076.1
> RH70178.complete GAGTCAGTGCACGCCCGACACCGTGACGCTGCAGACGAGGTGCAGTTCGA GTGGTTTTCGGTGGTTTTTGTCGTACTGGCTCGAAGTCTTTTTGGATTTG CGATACCCCCAGCTATCATAATACCAGGCGGAGATTCGTGGGGTGAACCG ATCGATCGGTTATATCACCGCCGTCTAGTATATTCCGCAGATCGGACGTA AATGAACGATCCCGGCGATATACCACTGACACACACAAGCACTCCGGACA GCAGGCCGCCCTGCAGCATCATTTCCATCATACCCACCATAGGGATGTCC TCATGTCGCGGAAGAGCCGAGGCATTCGCACGGAGTCTGTCCTCCAAGCT GCGCACCTTGGGATCACAGACAACCGAGGAGGGCGAGGGCAACGCGGAGG ATGAGCCGATCATAAATGGAACCAGCACGAACACGTGGGTCAACTCGCAC GACTCGGAGCAGACGGTGACGGACCTGCAGCCACTGCGCCATGAGTCCGA CTCCTTCTTCGACTTCGACTGCGAGCTGGAGTCGCCGGGGAGTCCTGTGG ACGAGTGCGAGTACCTGCGCTTGATCGAAACTGCCTCGAATACGCCGCAC AACTCTACGGCGGAGTCGGGCTATGCCTGCGCTTCAATGGCCAGCAGCCA TAGTAGCAGCAATGATGGTCCGTACTTTGATGCATCCGCTTCCACATCCA CAGCTGCAGCTGCCCAGGATCAGACGCTGCCAGCCTCGGAACACAAAGAG TATGTAAATACCCTACAACTAAACGGAAAGCATGGACTGGCCAATGGAGT GCAGGAGGAGCAGCCAGCTTTCCAGGATGATGTGCAGGAGGACGAGGCCT TCTTGCAGGCACAGATCCTCAATGAGCTCCAGAAGCACAGCAACAGTTTG ACGGAAGTGGAGCAGACAAAGCCCGAGGAGGGCAAGCTCACCAATGGGCA TCTCGAGAAGGTGGAGGAGCTGGAACTGAAGGACGTCCTGGAGGTAGCTG GTACTACAAACAGAGCTCCAAAGGTGATCGCCGCTCCACAAGAAGTGGAA GCCTTTGCTGATAGAAGCCAAGAGCAATCACCTAATGACAGAGTTCAAAA AGAAAGCTCCCAGGAAAGGGTTCCAGAAGGAACTCCATTCGAAGGAGTCC AAGGAGAATCTCCTAGCGACAGAGTCCAGACGGACGCGTCCGATGAAAGG GTTCAAGAGGAAATTTCCAACGATACTGTTCAAGTGGAATCCAACCACAA ATCCGCCACAGAATCAATTTCCACCGAGGTAACCACGTTGGAAAGATCAC CAGAGGAAAGCAGGAATGATGAACTCTCGCCAGACAGTGGTGTGGATGAA ACAGACAAGTCGGCCAGTAATCTCACCGTAGATGTGGACCTGGCCCAAAT CGAACAGGCCAAACAGGATGCCACTGAGGCTGTGGAAAAGAGTGGTGCCC CCAGTCGGGGTACCACAGTCGATACCACAGATGATGAAGACGATTGTAGA CCACAGCGCATCAGGCGTTGTTCCTCCCTGAAAACGGGAAAGACACCACC CGGAACTCCGGGTCGCAAGAAGATCGTTAGGTTTGCCGACGTCCTTGGCT TGGATCTGGCCGATGTAAAGACCTTCCTGGACGAGATACCCACCATACCG AAATCGGCGTTCGAGGACCTGGAAATACTGGAGTCGGAGCCGCCACTTCA GCTGGGGCCCAAGTCCGACAAGCTATTGATGCCTCTGTTCCAGCAGCCAG GAGGCCTGCCCAAGTTCCTCGATGCGGTCCGGGAGAAGCAGGTGTCCCTG GAGAACGCTGCCGTGACGGACAACATCAACCAGACGATATCCGGATCTGT GCGTGTGCGCAATCTGGACTTTCACAAGTCGGTGCACATAAGGTACTCGC TGGACGGATGGAGAAGCTACGCCGACCTGCAGGCAAACTACGTGGAGAAC TCTTGCGATGGCTTCTCCGACATCTTCACCTTCGTGCTGTTCGGTAACTC GCTGCACGTGGGCCAGAGGCTGGAGTTCGCCGTAAGGTTCCAGTGCAAAG GCCAACAGTTCTGGGACAACAACTACGGGGCCAACTACTGCTTCCAGTGT TTGCCCAGCTCGACACATACCGCCGGCGGCTCCACGGCATCGCCTCCGTC TGTGGCGACTGGCGCCGTATCCACCGGCCATAGTGCCAGTCTGGTCGGAT TGCTAAGCCCCACGGCGGGCGATGCCTGGTGCAGCTCCTTCTACTAACCG GTGGCGATGGGCCCGCACTAAAGGCACTAGCATCCCGTCTAGAATCCAAC ACCCTCTCCCATGCCCAATCCAACGACACGACACCAAGATCTGGGAAAGT TTCCGGGCCTTGACGTGGTGTCTATGTCCCAGTAAGAAATCAAATCCAAG CAGTCCCATATGACCGCCCAGTCAGAGATCACAGATCAGAATACCAACCT TCGTGGGGCTAACTCTTCATTGGGGTGATTGGATTTTTTGTTAGAAAATC CACAAGGAACTAAGTATTTTTTTGGCAATTCTTAACGTAACGTATCAACA CAACTGGAACTAATTTGGAATGAAATTTTCAGTCAAAGGCAGATTAAGTT TTGATATTTTGGAACTTAAGAGCTGTTATTAACAACAAGAACTATTGTAC GAAATGTCAAGAAATTACATAACTCCCACAAGAATATTTCAGTCCCTGCA CGTCGATAAATCGAACCACCCTAGCCTTCCAAGGACGGCAAACATTGTTT ATATATTTTTATAGAATGAATGGAAAAGATTGAAGGGTTAGTGAAGGGCA AGAGGAGCTGTAAGAGCGCCACAAAAAAACTAAAGAATCAAACCAGAGTA GTGCGAACTAGAACAAAAGCCAGCAAGGTTCGAATGAATCCCAAAGATAG TTGTTAGTCGTATGTTATAAGAAGAGCAAGTGATAACAAACTAAAACTCA GATCAGTTTCTTCAATGTCTTCTTCTGTTTTTAGTTACTTTTCCCAATTT TTATTTGGTTTGTTCCTAGGTTTGTTTGTCATGCGAAAGCGATTGCCAGT TGGATCGGGCTATTAAGATTGTGTATCTGCCAGATAATGTATCATGATGA TTTAAATGAATCAGTTTTGTGAAAAGATTAATTGCCATTAATCACAGTTC TGAATATGAGCTTAGCACCATTTTAATACTTTTTGTTCGGTAAAAGCAGA TCCGTTCGAGCACAGAGACCATGTCAAAAGTTAACTATAACTAACCACCA TCCACTATCTAGTCAACTCGAGTTTACTTTTGCTACCTTTTGACTATTCG CAGTCAAAAAGGATATTCTCCAATCCGATGATATTTGTAGCCCGATCGGA AAAACCCCTTTTAGCCATCAGACACAGCAGACAAGCCTTAACTTTTGTTT CTCTTAATTGTTGATATTCTTCTAATGTTTGATTTTTTATATGCTTTAAT TTTAATTTAAACGATTTGAATATTTTCTATGTATATGTTGATGCGTAATA TATCTATCGTAATATTATATAAATATATATACAAAATAAAATAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19271393..19274568 | 3542..367 | 15730 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 19274689..19274878 | 369..180 | 950 | 100 | Minus |
chr3L | 24539361 | chr3L | 19277864..19278041 | 179..2 | 875 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19281925..19285103 | 3545..367 | 15880 | 100 | Minus |
3L | 28110227 | 3L | 19285224..19285413 | 369..180 | 950 | 100 | Minus |
3L | 28110227 | 3L | 19288392..19288569 | 179..2 | 875 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19275025..19278203 | 3545..367 | 15880 | 99.9 | Minus |
3L | 28103327 | 3L | 19278324..19278513 | 369..180 | 950 | 100 | Minus |
3L | 28103327 | 3L | 19281492..19281669 | 179..2 | 875 | 99.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19271427..19274565 | 370..3508 | 99 | <- | Minus |
chr3L | 19274689..19274878 | 180..369 | 100 | <- | Minus |
chr3L | 19277864..19278041 | 1..179 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9619-RA | 1..2046 | 202..2247 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9619-RA | 1..2046 | 202..2247 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-76A-RA | 1..2046 | 202..2247 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-76A-RB | 1..2046 | 202..2247 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9619-RA | 1..3541 | 2..3542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9619-RA | 1..3541 | 2..3542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-76A-RA | 1..3541 | 2..3542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-76A-RA | 1..3541 | 2..3542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19281928..19285100 | 370..3542 | 99 | <- | Minus |
3L | 19285224..19285413 | 180..369 | 100 | <- | Minus |
3L | 19288392..19288569 | 1..179 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19281928..19285100 | 370..3542 | 99 | <- | Minus |
3L | 19285224..19285413 | 180..369 | 100 | <- | Minus |
3L | 19288392..19288569 | 1..179 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19281928..19285100 | 370..3542 | 99 | <- | Minus |
3L | 19285224..19285413 | 180..369 | 100 | <- | Minus |
3L | 19288392..19288569 | 1..179 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19275028..19278200 | 370..3542 | 99 | <- | Minus |
arm_3L | 19278324..19278513 | 180..369 | 100 | <- | Minus |
arm_3L | 19281492..19281669 | 1..179 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19275028..19278200 | 370..3542 | 99 | <- | Minus |
3L | 19278324..19278513 | 180..369 | 100 | <- | Minus |
3L | 19281492..19281669 | 1..179 | 98 | Minus |
Translation from 201 to 2246
> RH70178.pep MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFARSLSSKL RTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESD SFFDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSH SSSNDGPYFDASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGV QEEQPAFQDDVQEDEAFLQAQILNELQKHSNSLTEVEQTKPEEGKLTNGH LEKVEELELKDVLEVAGTTNRAPKVIAAPQEVEAFADRSQEQSPNDRVQK ESSQERVPEGTPFEGVQGESPSDRVQTDASDERVQEEISNDTVQVESNHK SATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLTVDVDLAQI EQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQ LGPKSDKLLMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSV RVRNLDFHKSVHIRYSLDGWRSYADLQANYVENSCDGFSDIFTFVLFGNS LHVGQRLEFAVRFQCKGQQFWDNNYGANYCFQCLPSSTHTAGGSTASPPS VATGAVSTGHSASLVGLLSPTAGDAWCSSFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10772-PA | 647 | GF10772-PA | 1..647 | 1..681 | 2504 | 75.1 | Plus |
Dana\GF25195-PA | 393 | GF25195-PA | 164..339 | 454..629 | 185 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13414-PA | 685 | GG13414-PA | 1..685 | 1..681 | 3107 | 90.5 | Plus |
Dere\GG13723-PA | 384 | GG13723-PA | 155..330 | 454..629 | 187 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14417-PA | 595 | GH14417-PA | 297..595 | 380..681 | 1410 | 84.8 | Plus |
Dgri\GH14415-PA | 64 | GH14415-PA | 1..58 | 1..58 | 271 | 84.5 | Plus |
Dgri\GH16807-PA | 379 | GH16807-PA | 152..326 | 455..629 | 185 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gbs-76A-PD | 681 | CG9619-PD | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PC | 681 | CG9619-PC | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PB | 681 | CG9619-PB | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PA | 681 | CG9619-PA | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-70E-PA | 330 | CG9238-PA | 101..276 | 454..629 | 175 | 28.9 | Plus |
Gbs-70E-PC | 384 | CG9238-PC | 155..330 | 454..629 | 175 | 28.9 | Plus |
Gbs-70E-PB | 384 | CG9238-PB | 155..330 | 454..629 | 175 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13546-PA | 576 | GI13546-PA | 279..576 | 376..681 | 1421 | 85 | Plus |
Dmoj\GI13545-PA | 268 | GI13545-PA | 1..60 | 1..60 | 265 | 83.3 | Plus |
Dmoj\GI13819-PA | 380 | GI13819-PA | 154..327 | 456..629 | 188 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20910-PA | 655 | GL20910-PA | 1..655 | 1..681 | 2221 | 66.3 | Plus |
Dper\GL20988-PA | 383 | GL20988-PA | 154..329 | 454..629 | 184 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21917-PA | 656 | GA21917-PA | 1..656 | 1..681 | 2283 | 66.8 | Plus |
Dpse\GA21633-PA | 383 | GA21633-PA | 154..329 | 454..629 | 185 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14881-PA | 555 | GM14881-PA | 1..548 | 1..549 | 2477 | 93.4 | Plus |
Dsec\GM24544-PA | 384 | GM24544-PA | 155..330 | 454..629 | 192 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12289-PA | 249 | GD12289-PA | 27..242 | 433..674 | 954 | 78.9 | Plus |
Dsim\GD12288-PA | 123 | GD12288-PA | 1..122 | 1..122 | 653 | 100 | Plus |
Dsim\GD12617-PA | 384 | GD12617-PA | 155..330 | 454..629 | 186 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11905-PA | 563 | GJ11905-PA | 245..563 | 359..681 | 1440 | 81.8 | Plus |
Dvir\GJ11903-PA | 60 | GJ11903-PA | 1..56 | 1..56 | 276 | 91.1 | Plus |
Dvir\GJ11686-PA | 385 | GJ11686-PA | 157..331 | 455..629 | 190 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19640-PA | 641 | GK19640-PA | 309..641 | 374..681 | 1348 | 78.4 | Plus |
Dwil\GK19640-PA | 641 | GK19640-PA | 1..277 | 1..251 | 699 | 62.4 | Plus |
Dwil\GK20414-PA | 419 | GK20414-PA | 189..364 | 454..629 | 181 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22922-PA | 683 | GE22922-PA | 1..683 | 1..681 | 3060 | 92.1 | Plus |
Dyak\GE22509-PA | 279 | GE22509-PA | 1..211 | 1..209 | 1070 | 97.2 | Plus |
Dyak\GE22509-PA | 279 | GE22509-PA | 213..279 | 615..681 | 369 | 95.5 | Plus |
Dyak\GE20018-PA | 383 | GE20018-PA | 154..329 | 454..629 | 185 | 28.9 | Plus |
Translation from 201 to 2246
> RH70178.hyp MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFARSLSSKL RTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESD SFFDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSH SSSNDGPYFDASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGV QEEQPAFQDDVQEDEAFLQAQILNELQKHSNSLTEVEQTKPEEGKLTNGH LEKVEELELKDVLEVAGTTNRAPKVIAAPQEVEAFADRSQEQSPNDRVQK ESSQERVPEGTPFEGVQGESPSDRVQTDASDERVQEEISNDTVQVESNHK SATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLTVDVDLAQI EQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQ LGPKSDKLLMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSV RVRNLDFHKSVHIRYSLDGWRSYADLQANYVENSCDGFSDIFTFVLFGNS LHVGQRLEFAVRFQCKGQQFWDNNYGANYCFQCLPSSTHTAGGSTASPPS VATGAVSTGHSASLVGLLSPTAGDAWCSSFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gbs-76A-PD | 681 | CG9619-PD | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PC | 681 | CG9619-PC | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PB | 681 | CG9619-PB | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-76A-PA | 681 | CG9619-PA | 1..681 | 1..681 | 3525 | 100 | Plus |
Gbs-70E-PA | 330 | CG9238-PA | 101..276 | 454..629 | 175 | 28.9 | Plus |