Clone RH70178 Report

Search the DGRC for RH70178

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:701
Well:78
Vector:pFlc-1
Associated Gene/TranscriptGbs-76A-RA
Protein status:RH70178.pep: gold
Sequenced Size:3558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9619 2003-01-01 Sim4 clustering to Release 3
CG9619 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

RH70178.complete Sequence

3558 bp assembled on 2009-04-23

GenBank Submission: BT082076.1

> RH70178.complete
GAGTCAGTGCACGCCCGACACCGTGACGCTGCAGACGAGGTGCAGTTCGA
GTGGTTTTCGGTGGTTTTTGTCGTACTGGCTCGAAGTCTTTTTGGATTTG
CGATACCCCCAGCTATCATAATACCAGGCGGAGATTCGTGGGGTGAACCG
ATCGATCGGTTATATCACCGCCGTCTAGTATATTCCGCAGATCGGACGTA
AATGAACGATCCCGGCGATATACCACTGACACACACAAGCACTCCGGACA
GCAGGCCGCCCTGCAGCATCATTTCCATCATACCCACCATAGGGATGTCC
TCATGTCGCGGAAGAGCCGAGGCATTCGCACGGAGTCTGTCCTCCAAGCT
GCGCACCTTGGGATCACAGACAACCGAGGAGGGCGAGGGCAACGCGGAGG
ATGAGCCGATCATAAATGGAACCAGCACGAACACGTGGGTCAACTCGCAC
GACTCGGAGCAGACGGTGACGGACCTGCAGCCACTGCGCCATGAGTCCGA
CTCCTTCTTCGACTTCGACTGCGAGCTGGAGTCGCCGGGGAGTCCTGTGG
ACGAGTGCGAGTACCTGCGCTTGATCGAAACTGCCTCGAATACGCCGCAC
AACTCTACGGCGGAGTCGGGCTATGCCTGCGCTTCAATGGCCAGCAGCCA
TAGTAGCAGCAATGATGGTCCGTACTTTGATGCATCCGCTTCCACATCCA
CAGCTGCAGCTGCCCAGGATCAGACGCTGCCAGCCTCGGAACACAAAGAG
TATGTAAATACCCTACAACTAAACGGAAAGCATGGACTGGCCAATGGAGT
GCAGGAGGAGCAGCCAGCTTTCCAGGATGATGTGCAGGAGGACGAGGCCT
TCTTGCAGGCACAGATCCTCAATGAGCTCCAGAAGCACAGCAACAGTTTG
ACGGAAGTGGAGCAGACAAAGCCCGAGGAGGGCAAGCTCACCAATGGGCA
TCTCGAGAAGGTGGAGGAGCTGGAACTGAAGGACGTCCTGGAGGTAGCTG
GTACTACAAACAGAGCTCCAAAGGTGATCGCCGCTCCACAAGAAGTGGAA
GCCTTTGCTGATAGAAGCCAAGAGCAATCACCTAATGACAGAGTTCAAAA
AGAAAGCTCCCAGGAAAGGGTTCCAGAAGGAACTCCATTCGAAGGAGTCC
AAGGAGAATCTCCTAGCGACAGAGTCCAGACGGACGCGTCCGATGAAAGG
GTTCAAGAGGAAATTTCCAACGATACTGTTCAAGTGGAATCCAACCACAA
ATCCGCCACAGAATCAATTTCCACCGAGGTAACCACGTTGGAAAGATCAC
CAGAGGAAAGCAGGAATGATGAACTCTCGCCAGACAGTGGTGTGGATGAA
ACAGACAAGTCGGCCAGTAATCTCACCGTAGATGTGGACCTGGCCCAAAT
CGAACAGGCCAAACAGGATGCCACTGAGGCTGTGGAAAAGAGTGGTGCCC
CCAGTCGGGGTACCACAGTCGATACCACAGATGATGAAGACGATTGTAGA
CCACAGCGCATCAGGCGTTGTTCCTCCCTGAAAACGGGAAAGACACCACC
CGGAACTCCGGGTCGCAAGAAGATCGTTAGGTTTGCCGACGTCCTTGGCT
TGGATCTGGCCGATGTAAAGACCTTCCTGGACGAGATACCCACCATACCG
AAATCGGCGTTCGAGGACCTGGAAATACTGGAGTCGGAGCCGCCACTTCA
GCTGGGGCCCAAGTCCGACAAGCTATTGATGCCTCTGTTCCAGCAGCCAG
GAGGCCTGCCCAAGTTCCTCGATGCGGTCCGGGAGAAGCAGGTGTCCCTG
GAGAACGCTGCCGTGACGGACAACATCAACCAGACGATATCCGGATCTGT
GCGTGTGCGCAATCTGGACTTTCACAAGTCGGTGCACATAAGGTACTCGC
TGGACGGATGGAGAAGCTACGCCGACCTGCAGGCAAACTACGTGGAGAAC
TCTTGCGATGGCTTCTCCGACATCTTCACCTTCGTGCTGTTCGGTAACTC
GCTGCACGTGGGCCAGAGGCTGGAGTTCGCCGTAAGGTTCCAGTGCAAAG
GCCAACAGTTCTGGGACAACAACTACGGGGCCAACTACTGCTTCCAGTGT
TTGCCCAGCTCGACACATACCGCCGGCGGCTCCACGGCATCGCCTCCGTC
TGTGGCGACTGGCGCCGTATCCACCGGCCATAGTGCCAGTCTGGTCGGAT
TGCTAAGCCCCACGGCGGGCGATGCCTGGTGCAGCTCCTTCTACTAACCG
GTGGCGATGGGCCCGCACTAAAGGCACTAGCATCCCGTCTAGAATCCAAC
ACCCTCTCCCATGCCCAATCCAACGACACGACACCAAGATCTGGGAAAGT
TTCCGGGCCTTGACGTGGTGTCTATGTCCCAGTAAGAAATCAAATCCAAG
CAGTCCCATATGACCGCCCAGTCAGAGATCACAGATCAGAATACCAACCT
TCGTGGGGCTAACTCTTCATTGGGGTGATTGGATTTTTTGTTAGAAAATC
CACAAGGAACTAAGTATTTTTTTGGCAATTCTTAACGTAACGTATCAACA
CAACTGGAACTAATTTGGAATGAAATTTTCAGTCAAAGGCAGATTAAGTT
TTGATATTTTGGAACTTAAGAGCTGTTATTAACAACAAGAACTATTGTAC
GAAATGTCAAGAAATTACATAACTCCCACAAGAATATTTCAGTCCCTGCA
CGTCGATAAATCGAACCACCCTAGCCTTCCAAGGACGGCAAACATTGTTT
ATATATTTTTATAGAATGAATGGAAAAGATTGAAGGGTTAGTGAAGGGCA
AGAGGAGCTGTAAGAGCGCCACAAAAAAACTAAAGAATCAAACCAGAGTA
GTGCGAACTAGAACAAAAGCCAGCAAGGTTCGAATGAATCCCAAAGATAG
TTGTTAGTCGTATGTTATAAGAAGAGCAAGTGATAACAAACTAAAACTCA
GATCAGTTTCTTCAATGTCTTCTTCTGTTTTTAGTTACTTTTCCCAATTT
TTATTTGGTTTGTTCCTAGGTTTGTTTGTCATGCGAAAGCGATTGCCAGT
TGGATCGGGCTATTAAGATTGTGTATCTGCCAGATAATGTATCATGATGA
TTTAAATGAATCAGTTTTGTGAAAAGATTAATTGCCATTAATCACAGTTC
TGAATATGAGCTTAGCACCATTTTAATACTTTTTGTTCGGTAAAAGCAGA
TCCGTTCGAGCACAGAGACCATGTCAAAAGTTAACTATAACTAACCACCA
TCCACTATCTAGTCAACTCGAGTTTACTTTTGCTACCTTTTGACTATTCG
CAGTCAAAAAGGATATTCTCCAATCCGATGATATTTGTAGCCCGATCGGA
AAAACCCCTTTTAGCCATCAGACACAGCAGACAAGCCTTAACTTTTGTTT
CTCTTAATTGTTGATATTCTTCTAATGTTTGATTTTTTATATGCTTTAAT
TTTAATTTAAACGATTTGAATATTTTCTATGTATATGTTGATGCGTAATA
TATCTATCGTAATATTATATAAATATATATACAAAATAAAATAAAAAAAA
AAAAAAAA

RH70178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9619-RA 4105 CG9619-RA 1..3544 2..3545 17690 99.9 Plus
CG9619.c 4987 CG9619.c 1061..4426 180..3545 16815 99.9 Plus
CG9619.a 4120 CG9619.a 194..3559 180..3545 16815 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19271393..19274568 3542..367 15730 99.7 Minus
chr3L 24539361 chr3L 19274689..19274878 369..180 950 100 Minus
chr3L 24539361 chr3L 19277864..19278041 179..2 875 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:38:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19281925..19285103 3545..367 15880 100 Minus
3L 28110227 3L 19285224..19285413 369..180 950 100 Minus
3L 28110227 3L 19288392..19288569 179..2 875 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19275025..19278203 3545..367 15880 99.9 Minus
3L 28103327 3L 19278324..19278513 369..180 950 100 Minus
3L 28103327 3L 19281492..19281669 179..2 875 99.4 Minus
Blast to na_te.dros performed on 2019-03-16 09:26:49 has no hits.

RH70178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:25 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19271427..19274565 370..3508 99 <- Minus
chr3L 19274689..19274878 180..369 100 <- Minus
chr3L 19277864..19278041 1..179 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:02 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
CG9619-RA 1..2046 202..2247 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:17 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
CG9619-RA 1..2046 202..2247 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:30 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-76A-RA 1..2046 202..2247 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:35 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-76A-RB 1..2046 202..2247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-23 09:15:00 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
CG9619-RA 1..3541 2..3542 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:17 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
CG9619-RA 1..3541 2..3542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:30 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-76A-RA 1..3541 2..3542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:35 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-76A-RA 1..3541 2..3542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:25 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19281928..19285100 370..3542 99 <- Minus
3L 19285224..19285413 180..369 100 <- Minus
3L 19288392..19288569 1..179 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:25 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19281928..19285100 370..3542 99 <- Minus
3L 19285224..19285413 180..369 100 <- Minus
3L 19288392..19288569 1..179 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:25 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19281928..19285100 370..3542 99 <- Minus
3L 19285224..19285413 180..369 100 <- Minus
3L 19288392..19288569 1..179 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:30 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19275028..19278200 370..3542 99 <- Minus
arm_3L 19278324..19278513 180..369 100 <- Minus
arm_3L 19281492..19281669 1..179 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:06 Download gff for RH70178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19275028..19278200 370..3542 99 <- Minus
3L 19278324..19278513 180..369 100 <- Minus
3L 19281492..19281669 1..179 98   Minus

RH70178.pep Sequence

Translation from 201 to 2246

> RH70178.pep
MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFARSLSSKL
RTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESD
SFFDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSH
SSSNDGPYFDASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGV
QEEQPAFQDDVQEDEAFLQAQILNELQKHSNSLTEVEQTKPEEGKLTNGH
LEKVEELELKDVLEVAGTTNRAPKVIAAPQEVEAFADRSQEQSPNDRVQK
ESSQERVPEGTPFEGVQGESPSDRVQTDASDERVQEEISNDTVQVESNHK
SATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLTVDVDLAQI
EQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP
GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQ
LGPKSDKLLMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSV
RVRNLDFHKSVHIRYSLDGWRSYADLQANYVENSCDGFSDIFTFVLFGNS
LHVGQRLEFAVRFQCKGQQFWDNNYGANYCFQCLPSSTHTAGGSTASPPS
VATGAVSTGHSASLVGLLSPTAGDAWCSSFY*

RH70178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10772-PA 647 GF10772-PA 1..647 1..681 2504 75.1 Plus
Dana\GF25195-PA 393 GF25195-PA 164..339 454..629 185 28.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13414-PA 685 GG13414-PA 1..685 1..681 3107 90.5 Plus
Dere\GG13723-PA 384 GG13723-PA 155..330 454..629 187 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14417-PA 595 GH14417-PA 297..595 380..681 1410 84.8 Plus
Dgri\GH14415-PA 64 GH14415-PA 1..58 1..58 271 84.5 Plus
Dgri\GH16807-PA 379 GH16807-PA 152..326 455..629 185 29.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-76A-PD 681 CG9619-PD 1..681 1..681 3525 100 Plus
Gbs-76A-PC 681 CG9619-PC 1..681 1..681 3525 100 Plus
Gbs-76A-PB 681 CG9619-PB 1..681 1..681 3525 100 Plus
Gbs-76A-PA 681 CG9619-PA 1..681 1..681 3525 100 Plus
Gbs-70E-PA 330 CG9238-PA 101..276 454..629 175 28.9 Plus
Gbs-70E-PC 384 CG9238-PC 155..330 454..629 175 28.9 Plus
Gbs-70E-PB 384 CG9238-PB 155..330 454..629 175 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13546-PA 576 GI13546-PA 279..576 376..681 1421 85 Plus
Dmoj\GI13545-PA 268 GI13545-PA 1..60 1..60 265 83.3 Plus
Dmoj\GI13819-PA 380 GI13819-PA 154..327 456..629 188 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20910-PA 655 GL20910-PA 1..655 1..681 2221 66.3 Plus
Dper\GL20988-PA 383 GL20988-PA 154..329 454..629 184 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21917-PA 656 GA21917-PA 1..656 1..681 2283 66.8 Plus
Dpse\GA21633-PA 383 GA21633-PA 154..329 454..629 185 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14881-PA 555 GM14881-PA 1..548 1..549 2477 93.4 Plus
Dsec\GM24544-PA 384 GM24544-PA 155..330 454..629 192 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12289-PA 249 GD12289-PA 27..242 433..674 954 78.9 Plus
Dsim\GD12288-PA 123 GD12288-PA 1..122 1..122 653 100 Plus
Dsim\GD12617-PA 384 GD12617-PA 155..330 454..629 186 28.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11905-PA 563 GJ11905-PA 245..563 359..681 1440 81.8 Plus
Dvir\GJ11903-PA 60 GJ11903-PA 1..56 1..56 276 91.1 Plus
Dvir\GJ11686-PA 385 GJ11686-PA 157..331 455..629 190 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19640-PA 641 GK19640-PA 309..641 374..681 1348 78.4 Plus
Dwil\GK19640-PA 641 GK19640-PA 1..277 1..251 699 62.4 Plus
Dwil\GK20414-PA 419 GK20414-PA 189..364 454..629 181 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22922-PA 683 GE22922-PA 1..683 1..681 3060 92.1 Plus
Dyak\GE22509-PA 279 GE22509-PA 1..211 1..209 1070 97.2 Plus
Dyak\GE22509-PA 279 GE22509-PA 213..279 615..681 369 95.5 Plus
Dyak\GE20018-PA 383 GE20018-PA 154..329 454..629 185 28.9 Plus

RH70178.hyp Sequence

Translation from 201 to 2246

> RH70178.hyp
MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFARSLSSKL
RTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESD
SFFDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSH
SSSNDGPYFDASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGV
QEEQPAFQDDVQEDEAFLQAQILNELQKHSNSLTEVEQTKPEEGKLTNGH
LEKVEELELKDVLEVAGTTNRAPKVIAAPQEVEAFADRSQEQSPNDRVQK
ESSQERVPEGTPFEGVQGESPSDRVQTDASDERVQEEISNDTVQVESNHK
SATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLTVDVDLAQI
EQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP
GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQ
LGPKSDKLLMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSV
RVRNLDFHKSVHIRYSLDGWRSYADLQANYVENSCDGFSDIFTFVLFGNS
LHVGQRLEFAVRFQCKGQQFWDNNYGANYCFQCLPSSTHTAGGSTASPPS
VATGAVSTGHSASLVGLLSPTAGDAWCSSFY*

RH70178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-76A-PD 681 CG9619-PD 1..681 1..681 3525 100 Plus
Gbs-76A-PC 681 CG9619-PC 1..681 1..681 3525 100 Plus
Gbs-76A-PB 681 CG9619-PB 1..681 1..681 3525 100 Plus
Gbs-76A-PA 681 CG9619-PA 1..681 1..681 3525 100 Plus
Gbs-70E-PA 330 CG9238-PA 101..276 454..629 175 28.9 Plus